RNA–Protein interactions for RNA: ENST00000557285.1

VSX1-207, Transcript of visual system homeobox 1, humanhuman

TSL 3

Gene VSX1, Length 558 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-207ENST00000557285 PRG4Q92954 1404 aaPredicted RBP28.27■■■□□ 2.12
VSX1-207ENST00000557285 CARMIL1Q5VZK9 1371 aa28.27■■■□□ 2.12
VSX1-207ENST00000557285 JPH4Q96JJ6 628 aa28.27■■■□□ 2.12
VSX1-207ENST00000557285 KIAA0586Q9BVV6 1533 aa28.18■■■□□ 2.1
VSX1-207ENST00000557285 RAPGEF2Q9Y4G8 1499 aa28.07■■■□□ 2.08
VSX1-207ENST00000557285 IQGAP2Q13576 1575 aa28.03■■■□□ 2.08
VSX1-207ENST00000557285 TTBK1Q5TCY1 1321 aaPredicted RBP28.02■■■□□ 2.08
VSX1-207ENST00000557285 CARMIL2Q6F5E8 1435 aa27.92■■■□□ 2.06
VSX1-207ENST00000557285 ADCY10Q96PN6 1610 aa27.9■■■□□ 2.06
VSX1-207ENST00000557285 PTPRGP23470 1445 aa27.88■■■□□ 2.05
VSX1-207ENST00000557285 NPM1P06748 294 aaKnown RBP eCLIP27.87■■■□□ 2.05
VSX1-207ENST00000557285 CTTNBP2Q8WZ74 1663 aa27.87■■■□□ 2.05
VSX1-207ENST00000557285 PRXQ9BXM0 1461 aa27.85■■■□□ 2.05
VSX1-207ENST00000557285 TNIKQ9UKE5 1360 aa27.85■■■□□ 2.05
VSX1-207ENST00000557285 DISP1Q96F81 1524 aa27.83■■■□□ 2.05
VSX1-207ENST00000557285 UGGT2Q9NYU1 1516 aa27.81■■■□□ 2.04
VSX1-207ENST00000557285 FAM9AQ8IZU1 332 aaPredicted RBP27.79■■■□□ 2.04
VSX1-207ENST00000557285 CSRNP3Q8WYN3 585 aa27.78■■■□□ 2.04
VSX1-207ENST00000557285 KIAA0556O60303 1618 aa27.77■■■□□ 2.04
VSX1-207ENST00000557285 KIF13AQ9H1H9 1805 aa27.76■■■□□ 2.03
VSX1-207ENST00000557285 MAPKBP1O60336 1514 aa27.71■■■□□ 2.03
VSX1-207ENST00000557285 EEA1Q15075 1411 aa27.69■■■□□ 2.02
VSX1-207ENST00000557285 FAM69CQ0P6D2 419 aa27.68■■■□□ 2.02
VSX1-207ENST00000557285 CHIC1Q5VXU3 224 aa27.68■■■□□ 2.02
VSX1-207ENST00000557285 UACAQ9BZF9 1416 aa27.67■■■□□ 2.02
VSX1-207ENST00000557285 ABCC2Q92887 1545 aa27.65■■■□□ 2.02
VSX1-207ENST00000557285 GOLGA3Q08378 1498 aa27.64■■■□□ 2.02
VSX1-207ENST00000557285 ABCC10Q5T3U5 1492 aa27.64■■■□□ 2.02
VSX1-207ENST00000557285 DIP2BQ9P265 1576 aa27.63■■■□□ 2.01
VSX1-207ENST00000557285 UHRF1BP1LA0JNW5 1464 aa27.6■■■□□ 2.01
VSX1-207ENST00000557285 P3H3Q8IVL6 736 aa27.58■■■□□ 2.01
VSX1-207ENST00000557285 RANGAP1P46060 587 aaPredicted RBP27.57■■■□□ 2
VSX1-207ENST00000557285 EHMT2Q96KQ7 1210 aa27.56■■■□□ 2
VSX1-207ENST00000557285 PLB1Q6P1J6 1458 aa27.55■■■□□ 2
VSX1-207ENST00000557285 TSPOAP1O95153 1857 aa27.55■■■□□ 2
VSX1-207ENST00000557285 ASXL2Q76L83 1435 aa27.54■■■□□ 2
VSX1-207ENST00000557285 ZCCHC11Q5TAX3 1644 aaKnown RBP27.52■■■□□ 2
VSX1-207ENST00000557285 KDM5BQ9UGL1 1544 aa27.49■■□□□ 1.99
VSX1-207ENST00000557285 KIF21BO75037 1637 aa27.49■■□□□ 1.99
VSX1-207ENST00000557285 ABCA8O94911 1581 aa27.45■■□□□ 1.99
VSX1-207ENST00000557285 SAMD9Q5K651 1589 aa27.43■■□□□ 1.98
VSX1-207ENST00000557285 ARID3CA6NKF2 412 aa27.42■■□□□ 1.98
VSX1-207ENST00000557285 EPRSP07814 1512 aaKnown RBP27.36■■□□□ 1.97
VSX1-207ENST00000557285 UBTFP17480 764 aaKnown RBP27.36■■□□□ 1.97
VSX1-207ENST00000557285 GLI2P10070 1586 aa27.35■■□□□ 1.97
VSX1-207ENST00000557285 FHOD3Q2V2M9 1422 aa27.34■■□□□ 1.97
VSX1-207ENST00000557285 WDR7Q9Y4E6 1490 aa27.33■■□□□ 1.97
VSX1-207ENST00000557285 KDM6BO15054 1643 aa27.31■■□□□ 1.96
VSX1-207ENST00000557285 KCNH8Q96L42 1107 aa27.29■■□□□ 1.96
VSX1-207ENST00000557285 RAPGEF6Q8TEU7 1601 aa27.29■■□□□ 1.96
VSX1-207ENST00000557285 PPRC1Q5VV67 1664 aaKnown RBP27.29■■□□□ 1.96
VSX1-207ENST00000557285 MAP3K4Q9Y6R4 1608 aa27.27■■□□□ 1.96
VSX1-207ENST00000557285 EFCAB5A4FU69 1503 aa27.24■■□□□ 1.95
VSX1-207ENST00000557285 ATP10BO94823 1461 aa27.24■■□□□ 1.95
VSX1-207ENST00000557285 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.22■■□□□ 1.95
VSX1-207ENST00000557285 HNRNPUL2Q1KMD3 747 aaKnown RBP27.22■■□□□ 1.95
VSX1-207ENST00000557285 NUP153P49790 1475 aaKnown RBP27.16■■□□□ 1.94
VSX1-207ENST00000557285 TEX14Q8IWB6 1497 aa27.15■■□□□ 1.94
VSX1-207ENST00000557285 CFAP43Q8NDM7 1665 aa27.14■■□□□ 1.93
VSX1-207ENST00000557285 CD109Q6YHK3 1445 aa27.13■■□□□ 1.93
VSX1-207ENST00000557285 AEBP2Q6ZN18 517 aaPredicted RBP27.11■■□□□ 1.93
VSX1-207ENST00000557285 ARHGAP35Q9NRY4 1499 aa27.08■■□□□ 1.93
VSX1-207ENST00000557285 ATP1B4Q9UN42 357 aaPredicted RBP27.07■■□□□ 1.92
VSX1-207ENST00000557285 COL17A1Q9UMD9 1497 aaPredicted RBP27.06■■□□□ 1.92
VSX1-207ENST00000557285 MAGI3Q5TCQ9 1506 aa27.03■■□□□ 1.92
VSX1-207ENST00000557285 CDK13Q14004 1512 aaKnown RBP27■■□□□ 1.91
VSX1-207ENST00000557285 ABCA9Q8IUA7 1624 aa27■■□□□ 1.91
VSX1-207ENST00000557285 FMN1Q68DA7 1419 aa26.99■■□□□ 1.91
VSX1-207ENST00000557285 PLEKHD1A6NEE1 506 aa26.98■■□□□ 1.91
VSX1-207ENST00000557285 HECW1Q76N89 1606 aa26.95■■□□□ 1.91
VSX1-207ENST00000557285 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.85■■□□□ 1.89
VSX1-207ENST00000557285 TTC37Q6PGP7 1564 aa26.84■■□□□ 1.89
VSX1-207ENST00000557285 PCF11O94913 1555 aaKnown RBP26.84■■□□□ 1.89
VSX1-207ENST00000557285 CLIP1P30622 1438 aa26.83■■□□□ 1.89
VSX1-207ENST00000557285 LRRIQ1Q96JM4 1722 aa26.83■■□□□ 1.89
VSX1-207ENST00000557285 KDM4FA0A1W2PPD8 638 aa26.82■■□□□ 1.88
VSX1-207ENST00000557285 ARAP3Q8WWN8 1544 aa26.8■■□□□ 1.88
VSX1-207ENST00000557285 NEO1Q92859 1461 aa26.79■■□□□ 1.88
VSX1-207ENST00000557285 CDK11AQ9UQ88 783 aaPredicted RBP26.77■■□□□ 1.88
VSX1-207ENST00000557285 RAPGEF3O95398 923 aa26.76■■□□□ 1.87
VSX1-207ENST00000557285 CASKIN1Q8WXD9 1431 aa26.75■■□□□ 1.87
VSX1-207ENST00000557285 PHLDB1Q86UU1 1377 aa26.75■■□□□ 1.87
VSX1-207ENST00000557285 ADGRL1O94910 1474 aa26.74■■□□□ 1.87
VSX1-207ENST00000557285 KIF14Q15058 1648 aa26.74■■□□□ 1.87
VSX1-207ENST00000557285 FANCAO15360 1455 aa26.74■■□□□ 1.87
VSX1-207ENST00000557285 CFAP74Q9C0B2 1584 aa26.71■■□□□ 1.87
VSX1-207ENST00000557285 TROQ12816 1431 aaPredicted RBP26.7■■□□□ 1.86
VSX1-207ENST00000557285 AKNAQ7Z591 1439 aa26.69■■□□□ 1.86
VSX1-207ENST00000557285 CCDC18Q5T9S5 1454 aa26.68■■□□□ 1.86
VSX1-207ENST00000557285 FYCO1Q9BQS8 1478 aa26.68■■□□□ 1.86
VSX1-207ENST00000557285 FRMPD1Q5SYB0 1578 aa26.68■■□□□ 1.86
VSX1-207ENST00000557285 MYO5CQ9NQX4 1742 aa26.68■■□□□ 1.86
VSX1-207ENST00000557285 CEP162Q5TB80 1403 aa26.65■■□□□ 1.86
VSX1-207ENST00000557285 DENND4BO75064 1496 aaPredicted RBP26.64■■□□□ 1.86
VSX1-207ENST00000557285 LOC105371045A0A1W2PR82 267 aa26.64■■□□□ 1.86
VSX1-207ENST00000557285 PLCH2O75038 1416 aa26.64■■□□□ 1.85
VSX1-207ENST00000557285 RICTORQ6R327 1708 aa26.62■■□□□ 1.85
VSX1-207ENST00000557285 ARHGAP5Q13017 1502 aa26.59■■□□□ 1.85
VSX1-207ENST00000557285 EFCAB2Q5VUJ9 269 aa26.56■■□□□ 1.84
VSX1-207ENST00000557285 SCAPERQ9BY12 1400 aa26.56■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms