RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 SHROOM2Q13796 1616 aa16.99■□□□□ 0.31
SYNE2-224ENST00000557024 FHAD1B1AJZ9 1412 aa16.99■□□□□ 0.31
SYNE2-224ENST00000557024 PRG4Q92954 1404 aaPredicted RBP16.97■□□□□ 0.31
SYNE2-224ENST00000557024 KIF13AQ9H1H9 1805 aa16.96■□□□□ 0.31
SYNE2-224ENST00000557024 FAM69CQ0P6D2 419 aa16.96■□□□□ 0.31
SYNE2-224ENST00000557024 POTEDQ86YR6 584 aa16.94■□□□□ 0.3
SYNE2-224ENST00000557024 JPH4Q96JJ6 628 aa16.92■□□□□ 0.3
SYNE2-224ENST00000557024 ABCC10Q5T3U5 1492 aa16.92■□□□□ 0.3
SYNE2-224ENST00000557024 KDM4FA0A1W2PPD8 638 aa16.89■□□□□ 0.29
SYNE2-224ENST00000557024 NPM1P06748 294 aaKnown RBP eCLIP16.89■□□□□ 0.29
SYNE2-224ENST00000557024 ERICH3Q5RHP9 1530 aa16.89■□□□□ 0.29
SYNE2-224ENST00000557024 MAPKBP1O60336 1514 aa16.85■□□□□ 0.29
SYNE2-224ENST00000557024 TOP2BQ02880 1626 aa16.85■□□□□ 0.29
SYNE2-224ENST00000557024 ILDR1Q86SU0 546 aaPredicted RBP16.84■□□□□ 0.29
SYNE2-224ENST00000557024 DIP2BQ9P265 1576 aa16.83■□□□□ 0.28
SYNE2-224ENST00000557024 BIVM-ERCC5R4GMW8 1640 aa16.82■□□□□ 0.28
SYNE2-224ENST00000557024 KDM6BO15054 1643 aa16.81■□□□□ 0.28
SYNE2-224ENST00000557024 RUSC2Q8N2Y8 1516 aa16.8■□□□□ 0.28
SYNE2-224ENST00000557024 ADCY10Q96PN6 1610 aa16.79■□□□□ 0.28
SYNE2-224ENST00000557024 SUPT5HO00267 1087 aaKnown RBP16.79■□□□□ 0.28
SYNE2-224ENST00000557024 KIAA0586Q9BVV6 1533 aa16.69■□□□□ 0.26
SYNE2-224ENST00000557024 TSPOAP1O95153 1857 aa16.68■□□□□ 0.26
SYNE2-224ENST00000557024 TTBK1Q5TCY1 1321 aaPredicted RBP16.68■□□□□ 0.26
SYNE2-224ENST00000557024 PTPRGP23470 1445 aa16.64■□□□□ 0.25
SYNE2-224ENST00000557024 ADGRL1O94910 1474 aa16.64■□□□□ 0.25
SYNE2-224ENST00000557024 IGF1RP08069 1367 aa16.62■□□□□ 0.25
SYNE2-224ENST00000557024 ASXL2Q76L83 1435 aa16.6■□□□□ 0.25
SYNE2-224ENST00000557024 ABCC2Q92887 1545 aa16.6■□□□□ 0.25
SYNE2-224ENST00000557024 PLB1Q6P1J6 1458 aa16.57■□□□□ 0.24
SYNE2-224ENST00000557024 TNIKQ9UKE5 1360 aa16.56■□□□□ 0.24
SYNE2-224ENST00000557024 KCNA4P22459 653 aa16.56■□□□□ 0.24
SYNE2-224ENST00000557024 KIF27Q86VH2 1401 aa16.55■□□□□ 0.24
SYNE2-224ENST00000557024 PPRC1Q5VV67 1664 aaKnown RBP16.55■□□□□ 0.24
SYNE2-224ENST00000557024 GLI2P10070 1586 aa16.55■□□□□ 0.24
SYNE2-224ENST00000557024 COL17A1Q9UMD9 1497 aaPredicted RBP16.54■□□□□ 0.24
SYNE2-224ENST00000557024 CARMIL2Q6F5E8 1435 aa16.54■□□□□ 0.24
SYNE2-224ENST00000557024 HECW2Q9P2P5 1572 aa16.53■□□□□ 0.24
SYNE2-224ENST00000557024 CUL7Q14999 1698 aa16.53■□□□□ 0.24
SYNE2-224ENST00000557024 UHRF1BP1LA0JNW5 1464 aa16.5■□□□□ 0.23
SYNE2-224ENST00000557024 CARMIL1Q5VZK9 1371 aa16.49■□□□□ 0.23
SYNE2-224ENST00000557024 UACAQ9BZF9 1416 aa16.48■□□□□ 0.23
SYNE2-224ENST00000557024 EPRSP07814 1512 aaKnown RBP16.48■□□□□ 0.23
SYNE2-224ENST00000557024 TEX14Q8IWB6 1497 aa16.45■□□□□ 0.22
SYNE2-224ENST00000557024 IQGAP2Q13576 1575 aa16.45■□□□□ 0.22
SYNE2-224ENST00000557024 MAP3K4Q9Y6R4 1608 aa16.44■□□□□ 0.22
SYNE2-224ENST00000557024 DISP1Q96F81 1524 aa16.43■□□□□ 0.22
SYNE2-224ENST00000557024 KDM5BQ9UGL1 1544 aa16.43■□□□□ 0.22
SYNE2-224ENST00000557024 ZCCHC11Q5TAX3 1644 aaKnown RBP16.37■□□□□ 0.21
SYNE2-224ENST00000557024 WDR7Q9Y4E6 1490 aa16.35■□□□□ 0.21
SYNE2-224ENST00000557024 PPP4R3CPQ6ZMV5 832 aa16.35■□□□□ 0.21
SYNE2-224ENST00000557024 FBXO41Q8TF61 875 aa16.33■□□□□ 0.2
SYNE2-224ENST00000557024 UGGT2Q9NYU1 1516 aa16.33■□□□□ 0.2
SYNE2-224ENST00000557024 CD109Q6YHK3 1445 aa16.31■□□□□ 0.2
SYNE2-224ENST00000557024 KIAA0556O60303 1618 aa16.3■□□□□ 0.2
SYNE2-224ENST00000557024 KCNH8Q96L42 1107 aa16.3■□□□□ 0.2
SYNE2-224ENST00000557024 MAGI3Q5TCQ9 1506 aa16.29■□□□□ 0.2
SYNE2-224ENST00000557024 RAPGEF2Q9Y4G8 1499 aa16.28■□□□□ 0.2
SYNE2-224ENST00000557024 KIF21BO75037 1637 aa16.24■□□□□ 0.19
SYNE2-224ENST00000557024 CFAP43Q8NDM7 1665 aa16.21■□□□□ 0.19
SYNE2-224ENST00000557024 ABCA8O94911 1581 aa16.18■□□□□ 0.18
SYNE2-224ENST00000557024 PTPRMP28827 1452 aa16.18■□□□□ 0.18
SYNE2-224ENST00000557024 ARID3CA6NKF2 412 aa16.17■□□□□ 0.18
SYNE2-224ENST00000557024 ARAP3Q8WWN8 1544 aa16.17■□□□□ 0.18
SYNE2-224ENST00000557024 GOLGA3Q08378 1498 aa16.16■□□□□ 0.18
SYNE2-224ENST00000557024 ADAMTSL3P82987 1691 aa16.12■□□□□ 0.17
SYNE2-224ENST00000557024 RAPGEF3O95398 923 aa16.12■□□□□ 0.17
SYNE2-224ENST00000557024 ARID4BQ4LE39 1312 aaPredicted RBP16.1■□□□□ 0.17
SYNE2-224ENST00000557024 PCF11O94913 1555 aaKnown RBP16.09■□□□□ 0.17
SYNE2-224ENST00000557024 PHLDB1Q86UU1 1377 aa16.08■□□□□ 0.16
SYNE2-224ENST00000557024 ATP10BO94823 1461 aa16.08■□□□□ 0.16
SYNE2-224ENST00000557024 LMTK3Q96Q04 1460 aa16.08■□□□□ 0.16
SYNE2-224ENST00000557024 CTTNBP2Q8WZ74 1663 aa16.08■□□□□ 0.16
SYNE2-224ENST00000557024 SCAF1Q9H7N4 1312 aaKnown RBP16.07■□□□□ 0.16
SYNE2-224ENST00000557024 P3H3Q8IVL6 736 aa16.06■□□□□ 0.16
SYNE2-224ENST00000557024 MADDQ8WXG6 1647 aa16.05■□□□□ 0.16
SYNE2-224ENST00000557024 MAPK8IP2Q13387 824 aaPredicted RBP16.05■□□□□ 0.16
SYNE2-224ENST00000557024 HSPA2P54652 639 aa16.04■□□□□ 0.16
SYNE2-224ENST00000557024 ABCA9Q8IUA7 1624 aa16.04■□□□□ 0.16
SYNE2-224ENST00000557024 BCORL1Q5H9F3 1711 aa16.03■□□□□ 0.16
SYNE2-224ENST00000557024 FAM9AQ8IZU1 332 aaPredicted RBP16.03■□□□□ 0.16
SYNE2-224ENST00000557024 EHMT2Q96KQ7 1210 aa16.03■□□□□ 0.16
SYNE2-224ENST00000557024 NEO1Q92859 1461 aa16.03■□□□□ 0.16
SYNE2-224ENST00000557024 FRMPD1Q5SYB0 1578 aa16.01■□□□□ 0.15
SYNE2-224ENST00000557024 PRXQ9BXM0 1461 aa16■□□□□ 0.15
SYNE2-224ENST00000557024 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.99■□□□□ 0.15
SYNE2-224ENST00000557024 HNRNPUL2Q1KMD3 747 aaKnown RBP15.99■□□□□ 0.15
SYNE2-224ENST00000557024 NCBP3Q53F19 620 aaKnown RBP15.98■□□□□ 0.15
SYNE2-224ENST00000557024 CERKQ8TCT0 537 aa15.97■□□□□ 0.15
SYNE2-224ENST00000557024 RIMS1Q86UR5 1692 aaKnown RBP15.96■□□□□ 0.15
SYNE2-224ENST00000557024 ARHGEF40Q8TER5 1519 aa15.96■□□□□ 0.15
SYNE2-224ENST00000557024 DENND4BO75064 1496 aaPredicted RBP15.94■□□□□ 0.14
SYNE2-224ENST00000557024 RAPGEF6Q8TEU7 1601 aa15.91■□□□□ 0.14
SYNE2-224ENST00000557024 POGZQ7Z3K3 1410 aa15.91■□□□□ 0.14
SYNE2-224ENST00000557024 FHOD3Q2V2M9 1422 aa15.9■□□□□ 0.14
SYNE2-224ENST00000557024 AKNAQ7Z591 1439 aa15.9■□□□□ 0.14
SYNE2-224ENST00000557024 FANCAO15360 1455 aa15.9■□□□□ 0.14
SYNE2-224ENST00000557024 NUP153P49790 1475 aaKnown RBP15.9■□□□□ 0.14
SYNE2-224ENST00000557024 DISP3Q9P2K9 1392 aa15.89■□□□□ 0.13
SYNE2-224ENST00000557024 YEATS2Q9ULM3 1422 aa15.89■□□□□ 0.13
SYNE2-224ENST00000557024 MLECQ14165 292 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms