RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	CANX	P27824	592 aa	Known RBP	6.77	□□□□□ -1.33
SYNE2-223	ENST00000557005	NACAD	O15069	1562 aa		6.77	□□□□□ -1.33
SYNE2-223	ENST00000557005	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	6.77	□□□□□ -1.33
SYNE2-223	ENST00000557005	ARX	Q96QS3	562 aa		6.76	□□□□□ -1.33
SYNE2-223	ENST00000557005	NOP58	Q9Y2X3	529 aa	Known RBP	6.76	□□□□□ -1.33
SYNE2-223	ENST00000557005	LAS1L	Q9Y4W2	734 aa	Known RBP	6.75	□□□□□ -1.33
SYNE2-223	ENST00000557005	TOP2A	P11388	1531 aa	Known RBP	6.75	□□□□□ -1.33
SYNE2-223	ENST00000557005	RUSC2	Q8N2Y8	1516 aa		6.75	□□□□□ -1.33
SYNE2-223	ENST00000557005	ZNF777	Q9ULD5	760 aa	Predicted RBP	6.74	□□□□□ -1.33
SYNE2-223	ENST00000557005	B4GALNT3	Q6L9W6	998 aa		6.74	□□□□□ -1.33
SYNE2-223	ENST00000557005	KANK4	Q5T7N3	995 aa	Predicted RBP	6.74	□□□□□ -1.33
SYNE2-223	ENST00000557005	VPS8	Q8N3P4	1428 aa		6.73	□□□□□ -1.33
SYNE2-223	ENST00000557005	RRP7BP	Q9NSQ0	103 aa		6.73	□□□□□ -1.33
SYNE2-223	ENST00000557005	PPP4R2	Q9NY27	417 aa		6.72	□□□□□ -1.33
SYNE2-223	ENST00000557005	CCNB3	Q8WWL7	1395 aa		6.71	□□□□□ -1.33
SYNE2-223	ENST00000557005	BAZ1B	Q9UIG0	1483 aa	Known RBP	6.71	□□□□□ -1.34
SYNE2-223	ENST00000557005	DHX57	Q6P158	1386 aa	Known RBP	6.7	□□□□□ -1.34
SYNE2-223	ENST00000557005	SETD5	Q9C0A6	1442 aa		6.69	□□□□□ -1.34
SYNE2-223	ENST00000557005	RAB3GAP2	Q9H2M9	1393 aa		6.69	□□□□□ -1.34
SYNE2-223	ENST00000557005	TMC1	Q8TDI8	760 aa		6.69	□□□□□ -1.34
SYNE2-223	ENST00000557005	NEFM	P07197	916 aa		6.69	□□□□□ -1.34
SYNE2-223	ENST00000557005	EIF4G2	P78344	907 aa	Known RBP eCLIP	6.69	□□□□□ -1.34
SYNE2-223	ENST00000557005	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	6.68	□□□□□ -1.34
SYNE2-223	ENST00000557005	RAPGEF2	Q9Y4G8	1499 aa		6.68	□□□□□ -1.34
SYNE2-223	ENST00000557005	MTUS2	Q5JR59	1369 aa		6.68	□□□□□ -1.34
SYNE2-223	ENST00000557005	KDM2A	Q9Y2K7	1162 aa		6.68	□□□□□ -1.34
SYNE2-223	ENST00000557005	CCER2	I3L3R5	266 aa		6.67	□□□□□ -1.34
SYNE2-223	ENST00000557005	DDRGK1	Q96HY6	314 aa		6.67	□□□□□ -1.34
SYNE2-223	ENST00000557005	SMARCA4	P51532	1647 aa		6.66	□□□□□ -1.34
SYNE2-223	ENST00000557005	HSPA5	P11021	654 aa	Known RBP	6.66	□□□□□ -1.34
SYNE2-223	ENST00000557005	KIF27	Q86VH2	1401 aa		6.65	□□□□□ -1.35
SYNE2-223	ENST00000557005	SMARCA2	P51531	1590 aa		6.65	□□□□□ -1.35
SYNE2-223	ENST00000557005	ARHGAP35	Q9NRY4	1499 aa		6.65	□□□□□ -1.35
SYNE2-223	ENST00000557005	FBLN2	P98095	1184 aa		6.64	□□□□□ -1.35
SYNE2-223	ENST00000557005	KIF21B	O75037	1637 aa		6.63	□□□□□ -1.35
SYNE2-223	ENST00000557005	EIF4G1	Q04637	1599 aa	Known RBP	6.62	□□□□□ -1.35
SYNE2-223	ENST00000557005	WDR43	Q15061	677 aa	Known RBP eCLIP	6.62	□□□□□ -1.35
SYNE2-223	ENST00000557005	FOXD1	Q16676	465 aa		6.62	□□□□□ -1.35
SYNE2-223	ENST00000557005	GLIPR1L2	Q4G1C9	344 aa		6.61	□□□□□ -1.35
SYNE2-223	ENST00000557005	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	6.6	□□□□□ -1.35
SYNE2-223	ENST00000557005	UPF2	Q9HAU5	1272 aa	Known RBP	6.6	□□□□□ -1.35
SYNE2-223	ENST00000557005	CC2D1B	Q5T0F9	858 aa	Known RBP	6.59	□□□□□ -1.35
SYNE2-223	ENST00000557005	CUX2	O14529	1486 aa		6.59	□□□□□ -1.35
SYNE2-223	ENST00000557005	PPM1G	O15355	546 aa	Predicted RBP	6.59	□□□□□ -1.35
SYNE2-223	ENST00000557005	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	6.58	□□□□□ -1.36
SYNE2-223	ENST00000557005	NAP1L5	Q96NT1	182 aa	Predicted RBP	6.58	□□□□□ -1.36
SYNE2-223	ENST00000557005	HSP90AA1	P07900	732 aa	Known RBP	6.58	□□□□□ -1.36
SYNE2-223	ENST00000557005	IPO9	Q96P70	1041 aa	Known RBP	6.58	□□□□□ -1.36
SYNE2-223	ENST00000557005	SYNJ1	O43426	1573 aa		6.57	□□□□□ -1.36
SYNE2-223	ENST00000557005	RGS3	P49796	1198 aa		6.57	□□□□□ -1.36
SYNE2-223	ENST00000557005	SPRYD3	Q8NCJ5	442 aa		6.57	□□□□□ -1.36
SYNE2-223	ENST00000557005	ANP32B	Q92688	251 aa	Known RBP	6.56	□□□□□ -1.36
SYNE2-223	ENST00000557005	CARD11	Q9BXL7	1154 aa		6.56	□□□□□ -1.36
SYNE2-223	ENST00000557005	FANCI	Q9NVI1	1328 aa		6.56	□□□□□ -1.36
SYNE2-223	ENST00000557005	BECN1	Q14457	450 aa		6.56	□□□□□ -1.36
SYNE2-223	ENST00000557005	FHAD1	B1AJZ9	1412 aa		6.55	□□□□□ -1.36
SYNE2-223	ENST00000557005	PPP1R15A	O75807	674 aa	Predicted RBP	6.55	□□□□□ -1.36
SYNE2-223	ENST00000557005	ARAP1	Q96P48	1450 aa		6.55	□□□□□ -1.36
SYNE2-223	ENST00000557005	CARMIL1	Q5VZK9	1371 aa		6.55	□□□□□ -1.36
SYNE2-223	ENST00000557005	FHOD3	Q2V2M9	1422 aa		6.54	□□□□□ -1.36
SYNE2-223	ENST00000557005	WDR97	A6NE52	1622 aa		6.53	□□□□□ -1.36
SYNE2-223	ENST00000557005	SENP3	Q9H4L4	574 aa	Predicted RBP	6.53	□□□□□ -1.36
SYNE2-223	ENST00000557005	MSH5	O43196	834 aa		6.53	□□□□□ -1.36
SYNE2-223	ENST00000557005	SLC24A1	O60721	1099 aa		6.52	□□□□□ -1.36
SYNE2-223	ENST00000557005	RGL3	Q3MIN7	710 aa		6.52	□□□□□ -1.36
SYNE2-223	ENST00000557005	NUDC	Q9Y266	331 aa		6.52	□□□□□ -1.36
SYNE2-223	ENST00000557005	CCDC18	Q5T9S5	1454 aa		6.52	□□□□□ -1.37
SYNE2-223	ENST00000557005	SLC4A3	P48751	1232 aa		6.52	□□□□□ -1.37
SYNE2-223	ENST00000557005	ERICH6B	Q5W0A0	696 aa		6.52	□□□□□ -1.37
SYNE2-223	ENST00000557005	ARID4B	Q4LE39	1312 aa	Predicted RBP	6.51	□□□□□ -1.37
SYNE2-223	ENST00000557005	CHGA	P10645	457 aa	Known RBP	6.51	□□□□□ -1.37
SYNE2-223	ENST00000557005	TIMELESS	Q9UNS1	1208 aa		6.51	□□□□□ -1.37
SYNE2-223	ENST00000557005	NCL	P19338	710 aa	Known RBP	6.51	□□□□□ -1.37
SYNE2-223	ENST00000557005	TRIM44	Q96DX7	344 aa	Predicted RBP	6.51	□□□□□ -1.37
SYNE2-223	ENST00000557005	TPRN	Q4KMQ1	711 aa		6.5	□□□□□ -1.37
SYNE2-223	ENST00000557005	MPHOSPH9	Q99550	1183 aa		6.5	□□□□□ -1.37
SYNE2-223	ENST00000557005	RCAN3	Q9UKA8	241 aa		6.5	□□□□□ -1.37
SYNE2-223	ENST00000557005	FRAT1	Q92837	279 aa	Predicted RBP	6.49	□□□□□ -1.37
SYNE2-223	ENST00000557005	RRBP1	Q9P2E9	1410 aa	Known RBP	6.49	□□□□□ -1.37
SYNE2-223	ENST00000557005	EXOC6	Q8TAG9	804 aa		6.49	□□□□□ -1.37
SYNE2-223	ENST00000557005	ANO8	Q9HCE9	1232 aa	Predicted RBP	6.49	□□□□□ -1.37
SYNE2-223	ENST00000557005	PLIN1	O60240	522 aa		6.48	□□□□□ -1.37
SYNE2-223	ENST00000557005	TCERG1	O14776	1098 aa	Known RBP	6.48	□□□□□ -1.37
SYNE2-223	ENST00000557005	FMN1	Q68DA7	1419 aa		6.48	□□□□□ -1.37
SYNE2-223	ENST00000557005	NEUROD2	Q15784	382 aa		6.48	□□□□□ -1.37
SYNE2-223	ENST00000557005	KTN1	Q86UP2	1357 aa	Known RBP	6.48	□□□□□ -1.37
SYNE2-223	ENST00000557005	DCAF11	Q8TEB1	546 aa		6.48	□□□□□ -1.37
SYNE2-223	ENST00000557005	PHLDB1	Q86UU1	1377 aa		6.48	□□□□□ -1.37
SYNE2-223	ENST00000557005	GZF1	Q9H116	711 aa	Predicted RBP	6.47	□□□□□ -1.37
SYNE2-223	ENST00000557005	KNSTRN	Q9Y448	316 aa		6.47	□□□□□ -1.37
SYNE2-223	ENST00000557005	CNTLN	Q9NXG0	1405 aa		6.47	□□□□□ -1.37
SYNE2-223	ENST00000557005	ZBED9	Q6R2W3	1325 aa		6.47	□□□□□ -1.37
SYNE2-223	ENST00000557005	ZBTB7C	A1YPR0	619 aa		6.47	□□□□□ -1.37
SYNE2-223	ENST00000557005	LRRC9	Q6ZRR7	1453 aa		6.47	□□□□□ -1.37
SYNE2-223	ENST00000557005	ROCK2	O75116	1388 aa	Known RBP	6.47	□□□□□ -1.37
SYNE2-223	ENST00000557005	L3MBTL2	Q969R5	705 aa		6.47	□□□□□ -1.37
SYNE2-223	ENST00000557005	TNNT2	P45379	298 aa	Predicted RBP	6.47	□□□□□ -1.37
SYNE2-223	ENST00000557005	PAK3	O75914	559 aa	Predicted RBP	6.46	□□□□□ -1.38
SYNE2-223	ENST00000557005	PDE4A	P27815	886 aa		6.46	□□□□□ -1.38
SYNE2-223	ENST00000557005	CFDP1	Q9UEE9	299 aa	Predicted RBP	6.46	□□□□□ -1.38

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