RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 AAMPQ13685 434 aa18.97■□□□□ 0.63
SHMT2-226ENST00000556825 RBM10P98175 930 aaKnown RBP18.96■□□□□ 0.63
SHMT2-226ENST00000556825 A0A0U1RQG5 324 aaPredicted RBP18.94■□□□□ 0.62
SHMT2-226ENST00000556825 PPP4R2Q9NY27 417 aa18.94■□□□□ 0.62
SHMT2-226ENST00000556825 ANP32AP39687 249 aaKnown RBP18.93■□□□□ 0.62
SHMT2-226ENST00000556825 FAM43AQ8N2R8 423 aa18.92■□□□□ 0.62
SHMT2-226ENST00000556825 PEG3Q9GZU2 1588 aa18.91■□□□□ 0.62
SHMT2-226ENST00000556825 PDIA4P13667 645 aaKnown RBP18.9■□□□□ 0.62
SHMT2-226ENST00000556825 TRIM52Q96A61 297 aa18.89■□□□□ 0.61
SHMT2-226ENST00000556825 NEFMP07197 916 aa18.89■□□□□ 0.61
SHMT2-226ENST00000556825 CCDC88BA6NC98 1476 aa18.88■□□□□ 0.61
SHMT2-226ENST00000556825 HNRNPUL2Q1KMD3 747 aaKnown RBP18.88■□□□□ 0.61
SHMT2-226ENST00000556825 SMARCA2P51531 1590 aa18.87■□□□□ 0.61
SHMT2-226ENST00000556825 EIF4G1Q04637 1599 aaKnown RBP18.87■□□□□ 0.61
SHMT2-226ENST00000556825 CCER2I3L3R5 266 aa18.85■□□□□ 0.61
SHMT2-226ENST00000556825 IRX6P78412 446 aaPredicted RBP18.82■□□□□ 0.6
SHMT2-226ENST00000556825 ATAD2BQ9ULI0 1458 aa18.81■□□□□ 0.6
SHMT2-226ENST00000556825 RRP9O43818 475 aaKnown RBP18.81■□□□□ 0.6
SHMT2-226ENST00000556825 GSE1Q14687 1217 aa18.81■□□□□ 0.6
SHMT2-226ENST00000556825 HSP90AA2PQ14568 343 aaPredicted RBP18.79■□□□□ 0.6
SHMT2-226ENST00000556825 PPM1GO15355 546 aaPredicted RBP18.76■□□□□ 0.59
SHMT2-226ENST00000556825 BCL11BQ9C0K0 894 aaPredicted RBP18.74■□□□□ 0.59
SHMT2-226ENST00000556825 BAZ1BQ9UIG0 1483 aaKnown RBP18.74■□□□□ 0.59
SHMT2-226ENST00000556825 CEP162Q5TB80 1403 aa18.72■□□□□ 0.59
SHMT2-226ENST00000556825 DHX57Q6P158 1386 aaKnown RBP18.71■□□□□ 0.59
SHMT2-226ENST00000556825 B4GALNT3Q6L9W6 998 aa18.69■□□□□ 0.58
SHMT2-226ENST00000556825 EEA1Q15075 1411 aa18.68■□□□□ 0.58
SHMT2-226ENST00000556825 LAS1LQ9Y4W2 734 aaKnown RBP18.68■□□□□ 0.58
SHMT2-226ENST00000556825 ABCC8Q09428 1581 aa18.67■□□□□ 0.58
SHMT2-226ENST00000556825 DDX10Q13206 875 aaKnown RBP18.66■□□□□ 0.58
SHMT2-226ENST00000556825 HSP90AA1P07900 732 aaKnown RBP18.64■□□□□ 0.57
SHMT2-226ENST00000556825 PPP1R15AO75807 674 aaPredicted RBP18.62■□□□□ 0.57
SHMT2-226ENST00000556825 FRAT1Q92837 279 aaPredicted RBP18.62■□□□□ 0.57
SHMT2-226ENST00000556825 ANP32CO43423 234 aa18.61■□□□□ 0.57
SHMT2-226ENST00000556825 NCAPD3P42695 1498 aa18.58■□□□□ 0.57
SHMT2-226ENST00000556825 TAF7LQ5H9L4 462 aa18.58■□□□□ 0.56
SHMT2-226ENST00000556825 HMGXB3Q12766 1538 aa18.56■□□□□ 0.56
SHMT2-226ENST00000556825 TNIKQ9UKE5 1360 aa18.56■□□□□ 0.56
SHMT2-226ENST00000556825 PRDM4Q9UKN5 801 aa18.55■□□□□ 0.56
SHMT2-226ENST00000556825 CALD1Q05682 793 aaKnown RBP18.53■□□□□ 0.56
SHMT2-226ENST00000556825 HNRNPUQ00839 825 aaKnown RBP eCLIP18.53■□□□□ 0.56
SHMT2-226ENST00000556825 DCAF11Q8TEB1 546 aa18.52■□□□□ 0.56
SHMT2-226ENST00000556825 RRAGDQ9NQL2 400 aaPredicted RBP18.52■□□□□ 0.56
SHMT2-226ENST00000556825 NAP1L5Q96NT1 182 aaPredicted RBP18.5■□□□□ 0.55
SHMT2-226ENST00000556825 CENPJQ9HC77 1338 aaPredicted RBP18.49■□□□□ 0.55
SHMT2-226ENST00000556825 NFKBIBQ15653 356 aa18.47■□□□□ 0.55
SHMT2-226ENST00000556825 SOGA1O94964 1423 aa18.46■□□□□ 0.55
SHMT2-226ENST00000556825 AEBP2Q6ZN18 517 aaPredicted RBP18.45■□□□□ 0.54
SHMT2-226ENST00000556825 RANGAP1P46060 587 aaPredicted RBP18.42■□□□□ 0.54
SHMT2-226ENST00000556825 NPM2Q86SE8 214 aaKnown RBP18.41■□□□□ 0.54
SHMT2-226ENST00000556825 KLHL34Q8N239 644 aa18.41■□□□□ 0.54
SHMT2-226ENST00000556825 PNNQ9H307 717 aaKnown RBP18.41■□□□□ 0.54
SHMT2-226ENST00000556825 DNAJC5Q9H3Z4 198 aa18.41■□□□□ 0.54
SHMT2-226ENST00000556825 RUSC2Q8N2Y8 1516 aa18.4■□□□□ 0.54
SHMT2-226ENST00000556825 RGS3P49796 1198 aa18.39■□□□□ 0.53
SHMT2-226ENST00000556825 PDCL3Q9H2J4 239 aa18.38■□□□□ 0.53
SHMT2-226ENST00000556825 CC2D2AQ9P2K1 1620 aa18.38■□□□□ 0.53
SHMT2-226ENST00000556825 CLCN1P35523 988 aa18.35■□□□□ 0.53
SHMT2-226ENST00000556825 NAP1L2Q9ULW6 460 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-226ENST00000556825 DDRGK1Q96HY6 314 aa18.34■□□□□ 0.53
SHMT2-226ENST00000556825 BBXQ8WY36 941 aaPredicted RBP18.33■□□□□ 0.53
SHMT2-226ENST00000556825 SYNJ1O43426 1573 aa18.32■□□□□ 0.52
SHMT2-226ENST00000556825 TCERG1O14776 1098 aaKnown RBP18.27■□□□□ 0.52
SHMT2-226ENST00000556825 GTF2E1P29083 439 aaPredicted RBP18.27■□□□□ 0.52
SHMT2-226ENST00000556825 PDE4AP27815 886 aa18.27■□□□□ 0.52
SHMT2-226ENST00000556825 SIN3AQ96ST3 1273 aa18.27■□□□□ 0.52
SHMT2-226ENST00000556825 CFTRP13569 1480 aa18.26■□□□□ 0.51
SHMT2-226ENST00000556825 ZNF326Q5BKZ1 582 aaKnown RBP18.26■□□□□ 0.51
SHMT2-226ENST00000556825 RSPH4AQ5TD94 716 aa18.26■□□□□ 0.51
SHMT2-226ENST00000556825 BACH2Q9BYV9 841 aa18.25■□□□□ 0.51
SHMT2-226ENST00000556825 NCBP3Q53F19 620 aaKnown RBP18.25■□□□□ 0.51
SHMT2-226ENST00000556825 WDR97A6NE52 1622 aa18.24■□□□□ 0.51
SHMT2-226ENST00000556825 L1TD1Q5T7N2 865 aaKnown RBP18.24■□□□□ 0.51
SHMT2-226ENST00000556825 IPO4Q8TEX9 1081 aaKnown RBP18.23■□□□□ 0.51
SHMT2-226ENST00000556825 TPM2P07951 284 aa18.23■□□□□ 0.51
SHMT2-226ENST00000556825 PRDM2Q13029 1718 aa18.22■□□□□ 0.51
SHMT2-226ENST00000556825 PAXIP1Q6ZW49 1069 aaPredicted RBP18.22■□□□□ 0.51
SHMT2-226ENST00000556825 TOP2BQ02880 1626 aa18.21■□□□□ 0.51
SHMT2-226ENST00000556825 CUX2O14529 1486 aa18.21■□□□□ 0.51
SHMT2-226ENST00000556825 STAC3Q96MF2 364 aa18.21■□□□□ 0.51
SHMT2-226ENST00000556825 UBTFP17480 764 aaKnown RBP18.21■□□□□ 0.5
SHMT2-226ENST00000556825 CHMP4BQ9H444 224 aaKnown RBP18.21■□□□□ 0.5
SHMT2-226ENST00000556825 MS4A1P11836 297 aa18.2■□□□□ 0.5
SHMT2-226ENST00000556825 CANXP27824 592 aaKnown RBP18.2■□□□□ 0.5
SHMT2-226ENST00000556825 ARXQ96QS3 562 aa18.2■□□□□ 0.5
SHMT2-226ENST00000556825 GOLGA3Q08378 1498 aa18.19■□□□□ 0.5
SHMT2-226ENST00000556825 ZBED9Q6R2W3 1325 aa18.19■□□□□ 0.5
SHMT2-226ENST00000556825 BIVM-ERCC5R4GMW8 1640 aa18.18■□□□□ 0.5
SHMT2-226ENST00000556825 FRAT2O75474 233 aaPredicted RBP18.18■□□□□ 0.5
SHMT2-226ENST00000556825 RNF123Q5XPI4 1314 aa18.17■□□□□ 0.5
SHMT2-226ENST00000556825 CADPSQ9ULU8 1353 aa18.16■□□□□ 0.5
SHMT2-226ENST00000556825 VPS8Q8N3P4 1428 aa18.13■□□□□ 0.49
SHMT2-226ENST00000556825 MAPKBP1O60336 1514 aa18.13■□□□□ 0.49
SHMT2-226ENST00000556825 NCLP19338 710 aaKnown RBP18.13■□□□□ 0.49
SHMT2-226ENST00000556825 SMAP1Q8IYB5 467 aaPredicted RBP18.13■□□□□ 0.49
SHMT2-226ENST00000556825 CNGB1Q14028 1251 aaPredicted RBP18.13■□□□□ 0.49
SHMT2-226ENST00000556825 CLIP1P30622 1438 aa18.11■□□□□ 0.49
SHMT2-226ENST00000556825 HIRIP3Q9BW71 556 aaPredicted RBP18.11■□□□□ 0.49
SHMT2-226ENST00000556825 CUX1P39880 1505 aa18.11■□□□□ 0.49
SHMT2-226ENST00000556825 CEP164Q9UPV0 1460 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms