RNA–Protein interactions for RNA: ENST00000556433.5

ACTN1-220, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 1,259 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-220ENST00000556433 RUSC2Q8N2Y8 1516 aa39.12■■■■□ 3.85
ACTN1-220ENST00000556433 CUL7Q14999 1698 aa39.06■■■■□ 3.84
ACTN1-220ENST00000556433 KIAA0586Q9BVV6 1533 aa39.05■■■■□ 3.84
ACTN1-220ENST00000556433 CARMIL1Q5VZK9 1371 aa39.04■■■■□ 3.84
ACTN1-220ENST00000556433 NPM1P06748 294 aaKnown RBP eCLIP38.89■■■■□ 3.82
ACTN1-220ENST00000556433 PTPRGP23470 1445 aa38.72■■■■□ 3.79
ACTN1-220ENST00000556433 TTBK1Q5TCY1 1321 aaPredicted RBP38.71■■■■□ 3.79
ACTN1-220ENST00000556433 ADCY10Q96PN6 1610 aa38.7■■■■□ 3.79
ACTN1-220ENST00000556433 FAM69CQ0P6D2 419 aa38.69■■■■□ 3.78
ACTN1-220ENST00000556433 CARMIL2Q6F5E8 1435 aa38.69■■■■□ 3.78
ACTN1-220ENST00000556433 RAPGEF2Q9Y4G8 1499 aa38.66■■■■□ 3.78
ACTN1-220ENST00000556433 KIF13AQ9H1H9 1805 aa38.64■■■■□ 3.78
ACTN1-220ENST00000556433 TNIKQ9UKE5 1360 aa38.64■■■■□ 3.78
ACTN1-220ENST00000556433 IQGAP2Q13576 1575 aa38.64■■■■□ 3.78
ACTN1-220ENST00000556433 ABCC10Q5T3U5 1492 aa38.62■■■■□ 3.77
ACTN1-220ENST00000556433 MAPKBP1O60336 1514 aa38.62■■■■□ 3.77
ACTN1-220ENST00000556433 DISP1Q96F81 1524 aa38.48■■■■□ 3.75
ACTN1-220ENST00000556433 DIP2BQ9P265 1576 aa38.46■■■■□ 3.75
ACTN1-220ENST00000556433 AEBP2Q6ZN18 517 aaPredicted RBP38.43■■■■□ 3.74
ACTN1-220ENST00000556433 UGGT2Q9NYU1 1516 aa38.43■■■■□ 3.74
ACTN1-220ENST00000556433 ABCC2Q92887 1545 aa38.4■■■■□ 3.74
ACTN1-220ENST00000556433 UACAQ9BZF9 1416 aa38.39■■■■□ 3.74
ACTN1-220ENST00000556433 UHRF1BP1LA0JNW5 1464 aa38.35■■■■□ 3.73
ACTN1-220ENST00000556433 PRXQ9BXM0 1461 aa38.29■■■■□ 3.72
ACTN1-220ENST00000556433 ASXL2Q76L83 1435 aa38.29■■■■□ 3.72
ACTN1-220ENST00000556433 KIAA0556O60303 1618 aa38.27■■■■□ 3.72
ACTN1-220ENST00000556433 PLB1Q6P1J6 1458 aa38.26■■■■□ 3.72
ACTN1-220ENST00000556433 TSPOAP1O95153 1857 aa38.2■■■■□ 3.71
ACTN1-220ENST00000556433 CTTNBP2Q8WZ74 1663 aa38.2■■■■□ 3.71
ACTN1-220ENST00000556433 KDM5BQ9UGL1 1544 aa38.17■■■■□ 3.7
ACTN1-220ENST00000556433 GOLGA3Q08378 1498 aa38.16■■■■□ 3.7
ACTN1-220ENST00000556433 CSRNP3Q8WYN3 585 aa38.16■■■■□ 3.7
ACTN1-220ENST00000556433 KDM6BO15054 1643 aa38.1■■■■□ 3.69
ACTN1-220ENST00000556433 GLI2P10070 1586 aa38.1■■■■□ 3.69
ACTN1-220ENST00000556433 ZCCHC11Q5TAX3 1644 aaKnown RBP38.05■■■■□ 3.68
ACTN1-220ENST00000556433 EPRSP07814 1512 aaKnown RBP38.03■■■■□ 3.68
ACTN1-220ENST00000556433 P3H3Q8IVL6 736 aa37.98■■■■□ 3.67
ACTN1-220ENST00000556433 FAM9AQ8IZU1 332 aaPredicted RBP37.97■■■■□ 3.67
ACTN1-220ENST00000556433 ABCA8O94911 1581 aa37.93■■■■□ 3.66
ACTN1-220ENST00000556433 PPRC1Q5VV67 1664 aaKnown RBP37.92■■■■□ 3.66
ACTN1-220ENST00000556433 EEA1Q15075 1411 aa37.92■■■■□ 3.66
ACTN1-220ENST00000556433 WDR7Q9Y4E6 1490 aa37.91■■■■□ 3.66
ACTN1-220ENST00000556433 KCNH8Q96L42 1107 aa37.87■■■■□ 3.65
ACTN1-220ENST00000556433 MAP3K4Q9Y6R4 1608 aa37.85■■■■□ 3.65
ACTN1-220ENST00000556433 TEX14Q8IWB6 1497 aa37.82■■■■□ 3.64
ACTN1-220ENST00000556433 ARID3CA6NKF2 412 aa37.8■■■■□ 3.64
ACTN1-220ENST00000556433 COL17A1Q9UMD9 1497 aaPredicted RBP37.77■■■■□ 3.64
ACTN1-220ENST00000556433 KDM4FA0A1W2PPD8 638 aa37.77■■■■□ 3.64
ACTN1-220ENST00000556433 RANGAP1P46060 587 aaPredicted RBP37.77■■■■□ 3.64
ACTN1-220ENST00000556433 CD109Q6YHK3 1445 aa37.72■■■■□ 3.63
ACTN1-220ENST00000556433 SAMD9Q5K651 1589 aa37.71■■■■□ 3.63
ACTN1-220ENST00000556433 ATP10BO94823 1461 aa37.7■■■■□ 3.63
ACTN1-220ENST00000556433 MAGI3Q5TCQ9 1506 aa37.63■■■■□ 3.61
ACTN1-220ENST00000556433 CFAP43Q8NDM7 1665 aa37.6■■■■□ 3.61
ACTN1-220ENST00000556433 CHIC1Q5VXU3 224 aa37.6■■■■□ 3.61
ACTN1-220ENST00000556433 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.59■■■■□ 3.61
ACTN1-220ENST00000556433 HNRNPUL2Q1KMD3 747 aaKnown RBP37.59■■■■□ 3.61
ACTN1-220ENST00000556433 FHOD3Q2V2M9 1422 aa37.56■■■■□ 3.6
ACTN1-220ENST00000556433 RAPGEF6Q8TEU7 1601 aa37.55■■■■□ 3.6
ACTN1-220ENST00000556433 KIF21BO75037 1637 aa37.54■■■■□ 3.6
ACTN1-220ENST00000556433 EHMT2Q96KQ7 1210 aa37.5■■■■□ 3.59
ACTN1-220ENST00000556433 UBTFP17480 764 aaKnown RBP37.46■■■■□ 3.59
ACTN1-220ENST00000556433 NUP153P49790 1475 aaKnown RBP37.45■■■■□ 3.59
ACTN1-220ENST00000556433 ADGRL1O94910 1474 aa37.43■■■■□ 3.58
ACTN1-220ENST00000556433 EFCAB5A4FU69 1503 aa37.4■■■■□ 3.58
ACTN1-220ENST00000556433 PLEKHD1A6NEE1 506 aa37.38■■■■□ 3.57
ACTN1-220ENST00000556433 ABCA9Q8IUA7 1624 aa37.37■■■■□ 3.57
ACTN1-220ENST00000556433 ARAP3Q8WWN8 1544 aa37.33■■■■□ 3.57
ACTN1-220ENST00000556433 PHLDB1Q86UU1 1377 aa37.32■■■■□ 3.57
ACTN1-220ENST00000556433 RAPGEF3O95398 923 aa37.22■■■■□ 3.55
ACTN1-220ENST00000556433 NEO1Q92859 1461 aa37.21■■■■□ 3.55
ACTN1-220ENST00000556433 ATP1B4Q9UN42 357 aaPredicted RBP37.19■■■■□ 3.54
ACTN1-220ENST00000556433 ARHGAP35Q9NRY4 1499 aa37.14■■■■□ 3.54
ACTN1-220ENST00000556433 FMN1Q68DA7 1419 aa37.13■■■■□ 3.53
ACTN1-220ENST00000556433 CDK13Q14004 1512 aaKnown RBP37.11■■■■□ 3.53
ACTN1-220ENST00000556433 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP37.07■■■■□ 3.53
ACTN1-220ENST00000556433 AKNAQ7Z591 1439 aa37.03■■■■□ 3.52
ACTN1-220ENST00000556433 FANCAO15360 1455 aa37.01■■■■□ 3.52
ACTN1-220ENST00000556433 CDK11AQ9UQ88 783 aaPredicted RBP37.01■■■■□ 3.52
ACTN1-220ENST00000556433 DENND4BO75064 1496 aaPredicted RBP36.99■■■■□ 3.51
ACTN1-220ENST00000556433 TTC37Q6PGP7 1564 aa36.98■■■■□ 3.51
ACTN1-220ENST00000556433 HECW1Q76N89 1606 aa36.98■■■■□ 3.51
ACTN1-220ENST00000556433 FRMPD1Q5SYB0 1578 aa36.96■■■■□ 3.51
ACTN1-220ENST00000556433 ARID4BQ4LE39 1312 aaPredicted RBP36.92■■■■□ 3.5
ACTN1-220ENST00000556433 CFAP74Q9C0B2 1584 aa36.91■■■■□ 3.5
ACTN1-220ENST00000556433 PLCH2O75038 1416 aa36.9■■■■□ 3.5
ACTN1-220ENST00000556433 RICTORQ6R327 1708 aa36.83■■■■□ 3.49
ACTN1-220ENST00000556433 EFCAB2Q5VUJ9 269 aa36.83■■■■□ 3.49
ACTN1-220ENST00000556433 HECW2Q9P2P5 1572 aa36.82■■■■□ 3.48
ACTN1-220ENST00000556433 TROQ12816 1431 aaPredicted RBP36.81■■■■□ 3.48
ACTN1-220ENST00000556433 SCAPERQ9BY12 1400 aa36.8■■■■□ 3.48
ACTN1-220ENST00000556433 ADAMTSL3P82987 1691 aa36.77■■■■□ 3.48
ACTN1-220ENST00000556433 CLIP1P30622 1438 aa36.76■■■■□ 3.48
ACTN1-220ENST00000556433 ARHGEF40Q8TER5 1519 aa36.75■■■■□ 3.47
ACTN1-220ENST00000556433 CASKIN1Q8WXD9 1431 aa36.75■■■■□ 3.47
ACTN1-220ENST00000556433 PTPRMP28827 1452 aa36.75■■■■□ 3.47
ACTN1-220ENST00000556433 KIF14Q15058 1648 aa36.73■■■■□ 3.47
ACTN1-220ENST00000556433 ZMYM4Q5VZL5 1548 aa36.72■■■■□ 3.47
ACTN1-220ENST00000556433 BCORL1Q5H9F3 1711 aa36.71■■■■□ 3.47
ACTN1-220ENST00000556433 YEATS2Q9ULM3 1422 aa36.71■■■■□ 3.47
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms