RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 EEA1Q15075 1411 aa23.84■■□□□ 1.41
SHMT2-217ENST00000555116 KIAA0586Q9BVV6 1533 aa23.84■■□□□ 1.41
SHMT2-217ENST00000555116 PRXQ9BXM0 1461 aa23.84■■□□□ 1.41
SHMT2-217ENST00000555116 ERCC6L2Q5T890 1561 aa23.82■■□□□ 1.4
SHMT2-217ENST00000555116 CSRNP3Q8WYN3 585 aa23.8■■□□□ 1.4
SHMT2-217ENST00000555116 JPH4Q96JJ6 628 aa23.79■■□□□ 1.4
SHMT2-217ENST00000555116 CYB5RLQ6IPT4 315 aa23.77■■□□□ 1.4
SHMT2-217ENST00000555116 PRG4Q92954 1404 aaPredicted RBP23.75■■□□□ 1.39
SHMT2-217ENST00000555116 IQGAP2Q13576 1575 aa23.73■■□□□ 1.39
SHMT2-217ENST00000555116 FAM9AQ8IZU1 332 aaPredicted RBP23.72■■□□□ 1.39
SHMT2-217ENST00000555116 CTTNBP2Q8WZ74 1663 aa23.71■■□□□ 1.39
SHMT2-217ENST00000555116 KIF21BO75037 1637 aa23.64■■□□□ 1.37
SHMT2-217ENST00000555116 UGGT2Q9NYU1 1516 aa23.62■■□□□ 1.37
SHMT2-217ENST00000555116 DISP1Q96F81 1524 aa23.57■■□□□ 1.36
SHMT2-217ENST00000555116 CARMIL2Q6F5E8 1435 aa23.56■■□□□ 1.36
SHMT2-217ENST00000555116 KIAA0556O60303 1618 aa23.51■■□□□ 1.35
SHMT2-217ENST00000555116 TNIKQ9UKE5 1360 aa23.49■■□□□ 1.35
SHMT2-217ENST00000555116 PTPRGP23470 1445 aa23.47■■□□□ 1.35
SHMT2-217ENST00000555116 GOLGA3Q08378 1498 aa23.46■■□□□ 1.35
SHMT2-217ENST00000555116 ADCY10Q96PN6 1610 aa23.42■■□□□ 1.34
SHMT2-217ENST00000555116 SAMD9Q5K651 1589 aa23.4■■□□□ 1.34
SHMT2-217ENST00000555116 TTBK1Q5TCY1 1321 aaPredicted RBP23.39■■□□□ 1.34
SHMT2-217ENST00000555116 EHMT2Q96KQ7 1210 aa23.39■■□□□ 1.34
SHMT2-217ENST00000555116 UBTFP17480 764 aaKnown RBP23.36■■□□□ 1.33
SHMT2-217ENST00000555116 UACAQ9BZF9 1416 aa23.32■■□□□ 1.32
SHMT2-217ENST00000555116 UHRF1BP1LA0JNW5 1464 aa23.32■■□□□ 1.32
SHMT2-217ENST00000555116 ABCC2Q92887 1545 aa23.3■■□□□ 1.32
SHMT2-217ENST00000555116 P3H3Q8IVL6 736 aa23.3■■□□□ 1.32
SHMT2-217ENST00000555116 RANGAP1P46060 587 aaPredicted RBP23.28■■□□□ 1.32
SHMT2-217ENST00000555116 EFCAB5A4FU69 1503 aa23.28■■□□□ 1.32
SHMT2-217ENST00000555116 ABCA8O94911 1581 aa23.27■■□□□ 1.32
SHMT2-217ENST00000555116 PLB1Q6P1J6 1458 aa23.26■■□□□ 1.31
SHMT2-217ENST00000555116 NPM1P06748 294 aaKnown RBP eCLIP23.26■■□□□ 1.31
SHMT2-217ENST00000555116 MAPKBP1O60336 1514 aa23.24■■□□□ 1.31
SHMT2-217ENST00000555116 TRHP20396 242 aaPredicted RBP23.23■■□□□ 1.31
SHMT2-217ENST00000555116 FHOD3Q2V2M9 1422 aa23.22■■□□□ 1.31
SHMT2-217ENST00000555116 KDM5BQ9UGL1 1544 aa23.21■■□□□ 1.31
SHMT2-217ENST00000555116 ARHGAP35Q9NRY4 1499 aa23.18■■□□□ 1.3
SHMT2-217ENST00000555116 ZCCHC11Q5TAX3 1644 aaKnown RBP23.18■■□□□ 1.3
SHMT2-217ENST00000555116 KIF13AQ9H1H9 1805 aa23.17■■□□□ 1.3
SHMT2-217ENST00000555116 RAPGEF6Q8TEU7 1601 aa23.15■■□□□ 1.3
SHMT2-217ENST00000555116 ABCC10Q5T3U5 1492 aa23.12■■□□□ 1.29
SHMT2-217ENST00000555116 ASXL2Q76L83 1435 aa23.11■■□□□ 1.29
SHMT2-217ENST00000555116 DIP2BQ9P265 1576 aa23.1■■□□□ 1.29
SHMT2-217ENST00000555116 ATP10BO94823 1461 aa23.05■■□□□ 1.28
SHMT2-217ENST00000555116 NUP153P49790 1475 aaKnown RBP23.05■■□□□ 1.28
SHMT2-217ENST00000555116 FAM69CQ0P6D2 419 aa23.04■■□□□ 1.28
SHMT2-217ENST00000555116 CLIP1P30622 1438 aa23.03■■□□□ 1.28
SHMT2-217ENST00000555116 LOC105371045A0A1W2PR82 267 aa23.03■■□□□ 1.28
SHMT2-217ENST00000555116 FMN1Q68DA7 1419 aa23.03■■□□□ 1.28
SHMT2-217ENST00000555116 ARID3CA6NKF2 412 aa23.01■■□□□ 1.27
SHMT2-217ENST00000555116 WDR7Q9Y4E6 1490 aa23■■□□□ 1.27
SHMT2-217ENST00000555116 GLI2P10070 1586 aa22.99■■□□□ 1.27
SHMT2-217ENST00000555116 EPRSP07814 1512 aaKnown RBP22.99■■□□□ 1.27
SHMT2-217ENST00000555116 CEP162Q5TB80 1403 aa22.96■■□□□ 1.27
SHMT2-217ENST00000555116 HECW1Q76N89 1606 aa22.95■■□□□ 1.26
SHMT2-217ENST00000555116 TSPOAP1O95153 1857 aa22.94■■□□□ 1.26
SHMT2-217ENST00000555116 LRRIQ1Q96JM4 1722 aa22.91■■□□□ 1.26
SHMT2-217ENST00000555116 PCF11O94913 1555 aaKnown RBP22.91■■□□□ 1.26
SHMT2-217ENST00000555116 MAP3K4Q9Y6R4 1608 aa22.9■■□□□ 1.26
SHMT2-217ENST00000555116 CDK13Q14004 1512 aaKnown RBP22.9■■□□□ 1.26
SHMT2-217ENST00000555116 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.89■■□□□ 1.25
SHMT2-217ENST00000555116 HNRNPUL2Q1KMD3 747 aaKnown RBP22.89■■□□□ 1.25
SHMT2-217ENST00000555116 PPRC1Q5VV67 1664 aaKnown RBP22.88■■□□□ 1.25
SHMT2-217ENST00000555116 CASKIN1Q8WXD9 1431 aa22.88■■□□□ 1.25
SHMT2-217ENST00000555116 KCNH8Q96L42 1107 aa22.87■■□□□ 1.25
SHMT2-217ENST00000555116 ATP1B4Q9UN42 357 aaPredicted RBP22.86■■□□□ 1.25
SHMT2-217ENST00000555116 CFAP43Q8NDM7 1665 aa22.85■■□□□ 1.25
SHMT2-217ENST00000555116 FYCO1Q9BQS8 1478 aa22.83■■□□□ 1.25
SHMT2-217ENST00000555116 PLEKHD1A6NEE1 506 aa22.81■■□□□ 1.24
SHMT2-217ENST00000555116 ABCA9Q8IUA7 1624 aa22.81■■□□□ 1.24
SHMT2-217ENST00000555116 CCDC18Q5T9S5 1454 aa22.78■■□□□ 1.24
SHMT2-217ENST00000555116 CD109Q6YHK3 1445 aa22.77■■□□□ 1.24
SHMT2-217ENST00000555116 MAGI3Q5TCQ9 1506 aa22.75■■□□□ 1.23
SHMT2-217ENST00000555116 TEX14Q8IWB6 1497 aa22.74■■□□□ 1.23
SHMT2-217ENST00000555116 CDK11AQ9UQ88 783 aaPredicted RBP22.72■■□□□ 1.23
SHMT2-217ENST00000555116 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.71■■□□□ 1.23
SHMT2-217ENST00000555116 TROQ12816 1431 aaPredicted RBP22.71■■□□□ 1.23
SHMT2-217ENST00000555116 KDM6BO15054 1643 aa22.7■■□□□ 1.22
SHMT2-217ENST00000555116 TTC37Q6PGP7 1564 aa22.69■■□□□ 1.22
SHMT2-217ENST00000555116 KIF14Q15058 1648 aa22.68■■□□□ 1.22
SHMT2-217ENST00000555116 VPS8Q8N3P4 1428 aa22.68■■□□□ 1.22
SHMT2-217ENST00000555116 COL17A1Q9UMD9 1497 aaPredicted RBP22.63■■□□□ 1.21
SHMT2-217ENST00000555116 MYO5CQ9NQX4 1742 aa22.6■■□□□ 1.21
SHMT2-217ENST00000555116 NEO1Q92859 1461 aa22.58■■□□□ 1.2
SHMT2-217ENST00000555116 PLCH2O75038 1416 aa22.56■■□□□ 1.2
SHMT2-217ENST00000555116 PHLDB1Q86UU1 1377 aa22.55■■□□□ 1.2
SHMT2-217ENST00000555116 ARAP3Q8WWN8 1544 aa22.55■■□□□ 1.2
SHMT2-217ENST00000555116 TIAM1Q13009 1591 aa22.55■■□□□ 1.2
SHMT2-217ENST00000555116 CFAP74Q9C0B2 1584 aa22.55■■□□□ 1.2
SHMT2-217ENST00000555116 FANCAO15360 1455 aa22.54■■□□□ 1.2
SHMT2-217ENST00000555116 MTUS2Q5JR59 1369 aa22.53■■□□□ 1.2
SHMT2-217ENST00000555116 EHBP1L1Q8N3D4 1523 aa22.52■■□□□ 1.2
SHMT2-217ENST00000555116 CDC42BPBQ9Y5S2 1711 aa22.52■■□□□ 1.2
SHMT2-217ENST00000555116 CDC42BPAQ5VT25 1732 aa22.51■■□□□ 1.19
SHMT2-217ENST00000555116 AKNAQ7Z591 1439 aa22.5■■□□□ 1.19
SHMT2-217ENST00000555116 PREX2Q70Z35 1606 aa22.5■■□□□ 1.19
SHMT2-217ENST00000555116 MAP3K1Q13233 1512 aa22.5■■□□□ 1.19
SHMT2-217ENST00000555116 ARHGAP5Q13017 1502 aa22.46■■□□□ 1.19
SHMT2-217ENST00000555116 EFCAB2Q5VUJ9 269 aa22.45■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 112.7 ms