RNA–Protein interactions for RNA: ENST00000555046.1

TMEM260-206, Transcript of transmembrane protein 260, humanhuman

TSL 3

Gene TMEM260, Length 618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-206ENST00000555046 DIP2BQ9P265 1576 aa17.79■□□□□ 0.44
TMEM260-206ENST00000555046 ABCC10Q5T3U5 1492 aa17.78■□□□□ 0.44
TMEM260-206ENST00000555046 CEP170Q5SW79 1584 aa17.75■□□□□ 0.43
TMEM260-206ENST00000555046 PBRM1Q86U86 1689 aa17.75■□□□□ 0.43
TMEM260-206ENST00000555046 TSPOAP1O95153 1857 aa17.73■□□□□ 0.43
TMEM260-206ENST00000555046 IGF1RP08069 1367 aa17.72■□□□□ 0.43
TMEM260-206ENST00000555046 FHAD1B1AJZ9 1412 aa17.72■□□□□ 0.43
TMEM260-206ENST00000555046 ERICH3Q5RHP9 1530 aa17.71■□□□□ 0.43
TMEM260-206ENST00000555046 ABCA5Q8WWZ7 1642 aa17.7■□□□□ 0.42
TMEM260-206ENST00000555046 SOCS7O14512 581 aa17.7■□□□□ 0.42
TMEM260-206ENST00000555046 FAM69CQ0P6D2 419 aa17.7■□□□□ 0.42
TMEM260-206ENST00000555046 SHROOM2Q13796 1616 aa17.69■□□□□ 0.42
TMEM260-206ENST00000555046 MAPKBP1O60336 1514 aa17.67■□□□□ 0.42
TMEM260-206ENST00000555046 ILDR2Q71H61 639 aa17.65■□□□□ 0.42
TMEM260-206ENST00000555046 CARMIL1Q5VZK9 1371 aa17.64■□□□□ 0.41
TMEM260-206ENST00000555046 GRIN2AQ12879 1464 aa17.59■□□□□ 0.41
TMEM260-206ENST00000555046 CSRNP3Q8WYN3 585 aa17.59■□□□□ 0.41
TMEM260-206ENST00000555046 EEA1Q15075 1411 aa17.56■□□□□ 0.4
TMEM260-206ENST00000555046 NUP160Q12769 1436 aa17.55■□□□□ 0.4
TMEM260-206ENST00000555046 ADAMTS12P58397 1594 aa17.54■□□□□ 0.4
TMEM260-206ENST00000555046 ADCY10Q96PN6 1610 aa17.53■□□□□ 0.4
TMEM260-206ENST00000555046 PPRC1Q5VV67 1664 aaKnown RBP17.52■□□□□ 0.39
TMEM260-206ENST00000555046 FOXD1Q16676 465 aa17.51■□□□□ 0.39
TMEM260-206ENST00000555046 JPH4Q96JJ6 628 aa17.51■□□□□ 0.39
TMEM260-206ENST00000555046 RUSC2Q8N2Y8 1516 aa17.51■□□□□ 0.39
TMEM260-206ENST00000555046 RAPGEF2Q9Y4G8 1499 aa17.49■□□□□ 0.39
TMEM260-206ENST00000555046 CUL7Q14999 1698 aa17.48■□□□□ 0.39
TMEM260-206ENST00000555046 FAM9AQ8IZU1 332 aaPredicted RBP17.48■□□□□ 0.39
TMEM260-206ENST00000555046 DISP3Q9P2K9 1392 aa17.48■□□□□ 0.39
TMEM260-206ENST00000555046 KIAA0586Q9BVV6 1533 aa17.44■□□□□ 0.38
TMEM260-206ENST00000555046 PRG4Q92954 1404 aaPredicted RBP17.42■□□□□ 0.38
TMEM260-206ENST00000555046 PRXQ9BXM0 1461 aa17.42■□□□□ 0.38
TMEM260-206ENST00000555046 SPATA31D1Q6ZQQ2 1576 aa17.38■□□□□ 0.37
TMEM260-206ENST00000555046 COL17A1Q9UMD9 1497 aaPredicted RBP17.37■□□□□ 0.37
TMEM260-206ENST00000555046 NPM1P06748 294 aaKnown RBP eCLIP17.37■□□□□ 0.37
TMEM260-206ENST00000555046 POTEDQ86YR6 584 aa17.34■□□□□ 0.37
TMEM260-206ENST00000555046 CARMIL2Q6F5E8 1435 aa17.32■□□□□ 0.36
TMEM260-206ENST00000555046 UBTFP17480 764 aaKnown RBP17.3■□□□□ 0.36
TMEM260-206ENST00000555046 GLI2P10070 1586 aa17.28■□□□□ 0.36
TMEM260-206ENST00000555046 IQGAP2Q13576 1575 aa17.23■□□□□ 0.35
TMEM260-206ENST00000555046 PTPRGP23470 1445 aa17.23■□□□□ 0.35
TMEM260-206ENST00000555046 TNIKQ9UKE5 1360 aa17.23■□□□□ 0.35
TMEM260-206ENST00000555046 MAP3K4Q9Y6R4 1608 aa17.21■□□□□ 0.35
TMEM260-206ENST00000555046 GOLGA3Q08378 1498 aa17.21■□□□□ 0.35
TMEM260-206ENST00000555046 KIF21BO75037 1637 aa17.21■□□□□ 0.35
TMEM260-206ENST00000555046 PCF11O94913 1555 aaKnown RBP17.2■□□□□ 0.34
TMEM260-206ENST00000555046 EHMT2Q96KQ7 1210 aa17.2■□□□□ 0.34
TMEM260-206ENST00000555046 UGGT2Q9NYU1 1516 aa17.19■□□□□ 0.34
TMEM260-206ENST00000555046 TTBK1Q5TCY1 1321 aaPredicted RBP17.18■□□□□ 0.34
TMEM260-206ENST00000555046 RANGAP1P46060 587 aaPredicted RBP17.15■□□□□ 0.34
TMEM260-206ENST00000555046 ASXL2Q76L83 1435 aa17.14■□□□□ 0.33
TMEM260-206ENST00000555046 TEX14Q8IWB6 1497 aa17.13■□□□□ 0.33
TMEM260-206ENST00000555046 PTPRMP28827 1452 aa17.12■□□□□ 0.33
TMEM260-206ENST00000555046 PLB1Q6P1J6 1458 aa17.12■□□□□ 0.33
TMEM260-206ENST00000555046 DISP1Q96F81 1524 aa17.12■□□□□ 0.33
TMEM260-206ENST00000555046 P3H3Q8IVL6 736 aa17.12■□□□□ 0.33
TMEM260-206ENST00000555046 CERKQ8TCT0 537 aa17.12■□□□□ 0.33
TMEM260-206ENST00000555046 ADAMTSL3P82987 1691 aa17.1■□□□□ 0.33
TMEM260-206ENST00000555046 ABCC2Q92887 1545 aa17.1■□□□□ 0.33
TMEM260-206ENST00000555046 UACAQ9BZF9 1416 aa17.07■□□□□ 0.32
TMEM260-206ENST00000555046 CTTNBP2Q8WZ74 1663 aa17.06■□□□□ 0.32
TMEM260-206ENST00000555046 EPRSP07814 1512 aaKnown RBP17.06■□□□□ 0.32
TMEM260-206ENST00000555046 KIAA0556O60303 1618 aa17.03■□□□□ 0.32
TMEM260-206ENST00000555046 UHRF1BP1LA0JNW5 1464 aa17.02■□□□□ 0.32
TMEM260-206ENST00000555046 EFCAB5A4FU69 1503 aa16.98■□□□□ 0.31
TMEM260-206ENST00000555046 LOC105371045A0A1W2PR82 267 aa16.98■□□□□ 0.31
TMEM260-206ENST00000555046 MADDQ8WXG6 1647 aa16.98■□□□□ 0.31
TMEM260-206ENST00000555046 FMN1Q68DA7 1419 aa16.95■□□□□ 0.3
TMEM260-206ENST00000555046 BCORL1Q5H9F3 1711 aa16.94■□□□□ 0.3
TMEM260-206ENST00000555046 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.94■□□□□ 0.3
TMEM260-206ENST00000555046 HNRNPUL2Q1KMD3 747 aaKnown RBP16.94■□□□□ 0.3
TMEM260-206ENST00000555046 FHOD3Q2V2M9 1422 aa16.94■□□□□ 0.3
TMEM260-206ENST00000555046 SAMD9Q5K651 1589 aa16.94■□□□□ 0.3
TMEM260-206ENST00000555046 CLIP1P30622 1438 aa16.92■□□□□ 0.3
TMEM260-206ENST00000555046 HSPA2P54652 639 aa16.91■□□□□ 0.3
TMEM260-206ENST00000555046 ATP1B4Q9UN42 357 aaPredicted RBP16.91■□□□□ 0.3
TMEM260-206ENST00000555046 ZCCHC11Q5TAX3 1644 aaKnown RBP16.91■□□□□ 0.3
TMEM260-206ENST00000555046 KDM5BQ9UGL1 1544 aa16.91■□□□□ 0.3
TMEM260-206ENST00000555046 ARHGAP35Q9NRY4 1499 aa16.9■□□□□ 0.3
TMEM260-206ENST00000555046 RIMS1Q86UR5 1692 aaKnown RBP16.89■□□□□ 0.29
TMEM260-206ENST00000555046 CDK11AQ9UQ88 783 aaPredicted RBP16.89■□□□□ 0.29
TMEM260-206ENST00000555046 PLEKHD1A6NEE1 506 aa16.88■□□□□ 0.29
TMEM260-206ENST00000555046 ABCA8O94911 1581 aa16.87■□□□□ 0.29
TMEM260-206ENST00000555046 CFAP43Q8NDM7 1665 aa16.87■□□□□ 0.29
TMEM260-206ENST00000555046 MAGI3Q5TCQ9 1506 aa16.86■□□□□ 0.29
TMEM260-206ENST00000555046 ARID3CA6NKF2 412 aa16.86■□□□□ 0.29
TMEM260-206ENST00000555046 KCNH8Q96L42 1107 aa16.84■□□□□ 0.29
TMEM260-206ENST00000555046 ATP10BO94823 1461 aa16.83■□□□□ 0.28
TMEM260-206ENST00000555046 CEP162Q5TB80 1403 aa16.82■□□□□ 0.28
TMEM260-206ENST00000555046 WDR7Q9Y4E6 1490 aa16.8■□□□□ 0.28
TMEM260-206ENST00000555046 RAPGEF6Q8TEU7 1601 aa16.78■□□□□ 0.28
TMEM260-206ENST00000555046 NUP153P49790 1475 aaKnown RBP16.78■□□□□ 0.28
TMEM260-206ENST00000555046 CASKIN1Q8WXD9 1431 aa16.77■□□□□ 0.27
TMEM260-206ENST00000555046 ARAP3Q8WWN8 1544 aa16.76■□□□□ 0.27
TMEM260-206ENST00000555046 CD109Q6YHK3 1445 aa16.76■□□□□ 0.27
TMEM260-206ENST00000555046 STRCQ7RTU9 1775 aa16.74■□□□□ 0.27
TMEM260-206ENST00000555046 MSH5O43196 834 aa16.69■□□□□ 0.26
TMEM260-206ENST00000555046 APLP2Q06481 763 aa16.69■□□□□ 0.26
TMEM260-206ENST00000555046 MED1Q15648 1581 aaPredicted RBP16.68■□□□□ 0.26
TMEM260-206ENST00000555046 FRMPD1Q5SYB0 1578 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms