RNA–Protein interactions for RNA: ENST00000554040.5

ATXN3-224, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 592 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-224ENST00000554040 TRIM41Q8WV44 630 aa14.01□□□□□ -0.17
ATXN3-224ENST00000554040 GABBR2O75899 941 aa13.97□□□□□ -0.17
ATXN3-224ENST00000554040 CD44P16070 742 aaKnown RBP13.97□□□□□ -0.17
ATXN3-224ENST00000554040 ATAD2BQ9ULI0 1458 aa13.93□□□□□ -0.18
ATXN3-224ENST00000554040 NESP48681 1621 aa13.93□□□□□ -0.18
ATXN3-224ENST00000554040 MNX1P50219 401 aaPredicted RBP13.91□□□□□ -0.18
ATXN3-224ENST00000554040 HMGXB3Q12766 1538 aa13.82□□□□□ -0.2
ATXN3-224ENST00000554040 SMARCA2P51531 1590 aa13.82□□□□□ -0.2
ATXN3-224ENST00000554040 ZNF579Q8NAF0 562 aaKnown RBP13.79□□□□□ -0.2
ATXN3-224ENST00000554040 THOC2Q8NI27 1593 aaKnown RBP13.79□□□□□ -0.2
ATXN3-224ENST00000554040 ZRANB1Q9UGI0 708 aa13.78□□□□□ -0.2
ATXN3-224ENST00000554040 PDS5BQ9NTI5 1447 aa13.74□□□□□ -0.21
ATXN3-224ENST00000554040 POTEIP0CG38 1075 aa13.74□□□□□ -0.21
ATXN3-224ENST00000554040 BAZ1BQ9UIG0 1483 aaKnown RBP13.74□□□□□ -0.21
ATXN3-224ENST00000554040 FKBP8Q14318 412 aa13.73□□□□□ -0.21
ATXN3-224ENST00000554040 SMARCA4P51532 1647 aa13.72□□□□□ -0.21
ATXN3-224ENST00000554040 LAMC3Q9Y6N6 1575 aa13.71□□□□□ -0.21
ATXN3-224ENST00000554040 NPM1P06748 294 aaKnown RBP eCLIP13.71□□□□□ -0.21
ATXN3-224ENST00000554040 CLCN6P51797 869 aa13.7□□□□□ -0.22
ATXN3-224ENST00000554040 PHF12Q96QT6 1004 aa13.66□□□□□ -0.22
ATXN3-224ENST00000554040 CADPSQ9ULU8 1353 aa13.63□□□□□ -0.23
ATXN3-224ENST00000554040 GALR2O43603 387 aaPredicted RBP13.63□□□□□ -0.23
ATXN3-224ENST00000554040 BAZ1AQ9NRL2 1556 aaPredicted RBP13.62□□□□□ -0.23
ATXN3-224ENST00000554040 KIF21AQ7Z4S6 1674 aa13.61□□□□□ -0.23
ATXN3-224ENST00000554040 PAK3O75914 559 aaPredicted RBP13.61□□□□□ -0.23
ATXN3-224ENST00000554040 PEG3Q9GZU2 1588 aa13.61□□□□□ -0.23
ATXN3-224ENST00000554040 MRC2Q9UBG0 1479 aa13.6□□□□□ -0.23
ATXN3-224ENST00000554040 MIER1Q8N108 512 aa13.59□□□□□ -0.23
ATXN3-224ENST00000554040 WDR62O43379 1518 aa13.55□□□□□ -0.24
ATXN3-224ENST00000554040 DCBLD2Q96PD2 775 aa13.52□□□□□ -0.25
ATXN3-224ENST00000554040 CCDC61Q9Y6R9 512 aa13.52□□□□□ -0.25
ATXN3-224ENST00000554040 MROH2BQ7Z745 1585 aa13.51□□□□□ -0.25
ATXN3-224ENST00000554040 TSPYL2Q9H2G4 693 aaPredicted RBP13.51□□□□□ -0.25
ATXN3-224ENST00000554040 LHX8Q68G74 356 aa13.5□□□□□ -0.25
ATXN3-224ENST00000554040 RASEFQ8IZ41 740 aa13.5□□□□□ -0.25
ATXN3-224ENST00000554040 PLCD3Q8N3E9 789 aa13.49□□□□□ -0.25
ATXN3-224ENST00000554040 PLEKHG5O94827 1062 aa13.47□□□□□ -0.25
ATXN3-224ENST00000554040 MS4A3Q96HJ5 214 aa13.47□□□□□ -0.25
ATXN3-224ENST00000554040 CEP164Q9UPV0 1460 aa13.45□□□□□ -0.26
ATXN3-224ENST00000554040 NUBP1P53384 320 aa13.42□□□□□ -0.26
ATXN3-224ENST00000554040 KIF12Q96FN5 646 aa13.42□□□□□ -0.26
ATXN3-224ENST00000554040 FANCD2Q9BXW9 1451 aa13.42□□□□□ -0.26
ATXN3-224ENST00000554040 PELP1Q8IZL8 1130 aaKnown RBP13.4□□□□□ -0.26
ATXN3-224ENST00000554040 CYB5RLQ6IPT4 315 aa13.37□□□□□ -0.27
ATXN3-224ENST00000554040 RIMBP3CA6NJZ7 1639 aa13.37□□□□□ -0.27
ATXN3-224ENST00000554040 RIMBP3BA6NNM3 1639 aa13.37□□□□□ -0.27
ATXN3-224ENST00000554040 RIMBP3Q9UFD9 1639 aa13.37□□□□□ -0.27
ATXN3-224ENST00000554040 ASTLQ6HA08 431 aaPredicted RBP13.36□□□□□ -0.27
ATXN3-224ENST00000554040 ZBTB47Q9UFB7 747 aaPredicted RBP13.35□□□□□ -0.27
ATXN3-224ENST00000554040 CFTRP13569 1480 aa13.35□□□□□ -0.27
ATXN3-224ENST00000554040 FBXO3Q9UK99 471 aa13.34□□□□□ -0.27
ATXN3-224ENST00000554040 MAP3K13O43283 966 aa13.33□□□□□ -0.28
ATXN3-224ENST00000554040 ATMINO43313 823 aaPredicted RBP13.33□□□□□ -0.28
ATXN3-224ENST00000554040 TRPC6Q9Y210 931 aa13.33□□□□□ -0.28
ATXN3-224ENST00000554040 ARHGEF11O15085 1522 aa13.33□□□□□ -0.28
ATXN3-224ENST00000554040 URB2Q14146 1524 aaKnown RBP13.33□□□□□ -0.28
ATXN3-224ENST00000554040 POTEB2H3BUK9 544 aa13.3□□□□□ -0.28
ATXN3-224ENST00000554040 WIZO95785 1651 aa13.27□□□□□ -0.29
ATXN3-224ENST00000554040 VASPP50552 380 aaPredicted RBP13.26□□□□□ -0.29
ATXN3-224ENST00000554040 ZNF608Q9ULD9 1512 aaPredicted RBP13.24□□□□□ -0.29
ATXN3-224ENST00000554040 ATN1P54259 1190 aaPredicted RBP13.24□□□□□ -0.29
ATXN3-224ENST00000554040 BMP2KQ9NSY1 1161 aaPredicted RBP13.24□□□□□ -0.29
ATXN3-224ENST00000554040 IFT140Q96RY7 1462 aa13.23□□□□□ -0.29
ATXN3-224ENST00000554040 FAM212AQ96EL1 285 aa13.22□□□□□ -0.29
ATXN3-224ENST00000554040 METRNQ9UJH8 293 aa13.2□□□□□ -0.3
ATXN3-224ENST00000554040 SGIP1Q9BQI5 828 aa13.19□□□□□ -0.3
ATXN3-224ENST00000554040 TIE1P35590 1138 aa13.18□□□□□ -0.3
ATXN3-224ENST00000554040 SLC39A7Q92504 469 aa13.18□□□□□ -0.3
ATXN3-224ENST00000554040 OTUD5Q96G74 571 aa13.18□□□□□ -0.3
ATXN3-224ENST00000554040 ARAP1Q96P48 1450 aa13.17□□□□□ -0.3
ATXN3-224ENST00000554040 PCDHB13Q9Y5F0 798 aa13.17□□□□□ -0.3
ATXN3-224ENST00000554040 C7P10643 843 aa13.16□□□□□ -0.3
ATXN3-224ENST00000554040 IFNL1Q8IU54 200 aa13.16□□□□□ -0.3
ATXN3-224ENST00000554040 POTEJP0CG39 1038 aa13.15□□□□□ -0.3
ATXN3-224ENST00000554040 POTEFA5A3E0 1075 aa13.14□□□□□ -0.31
ATXN3-224ENST00000554040 TTLL13PA6NNM8 815 aa13.14□□□□□ -0.31
ATXN3-224ENST00000554040 RSF1Q96T23 1441 aaPredicted RBP13.13□□□□□ -0.31
ATXN3-224ENST00000554040 DCAF8Q5TAQ9 597 aa13.11□□□□□ -0.31
ATXN3-224ENST00000554040 AQRO60306 1485 aaKnown RBP eCLIP13.1□□□□□ -0.31
ATXN3-224ENST00000554040 TOPBP1Q92547 1522 aa13.1□□□□□ -0.31
ATXN3-224ENST00000554040 TOP2AP11388 1531 aaKnown RBP13.09□□□□□ -0.31
ATXN3-224ENST00000554040 KLHL34Q8N239 644 aa13.09□□□□□ -0.31
ATXN3-224ENST00000554040 PYGBP11216 843 aa13.08□□□□□ -0.32
ATXN3-224ENST00000554040 IFNLR1Q8IU57 520 aaPredicted RBP13.08□□□□□ -0.32
ATXN3-224ENST00000554040 ABCC8Q09428 1581 aa13.07□□□□□ -0.32
ATXN3-224ENST00000554040 EIF4G3O43432 1585 aaKnown RBP13.05□□□□□ -0.32
ATXN3-224ENST00000554040 TRIM35Q9UPQ4 493 aa13.04□□□□□ -0.32
ATXN3-224ENST00000554040 COLQQ9Y215 455 aaPredicted RBP13.03□□□□□ -0.32
ATXN3-224ENST00000554040 CCDC88BA6NC98 1476 aa13.02□□□□□ -0.33
ATXN3-224ENST00000554040 TMEM106CQ9BVX2 250 aa13□□□□□ -0.33
ATXN3-224ENST00000554040 PCDHB8Q9UN66 801 aa13□□□□□ -0.33
ATXN3-224ENST00000554040 CHD1O14646 1710 aa12.99□□□□□ -0.33
ATXN3-224ENST00000554040 GSE1Q14687 1217 aa12.99□□□□□ -0.33
ATXN3-224ENST00000554040 CHMP7Q8WUX9 453 aaPredicted RBP12.99□□□□□ -0.33
ATXN3-224ENST00000554040 TDRD9Q8NDG6 1382 aaKnown RBP12.97□□□□□ -0.33
ATXN3-224ENST00000554040 DNMBPQ6XZF7 1577 aa12.97□□□□□ -0.33
ATXN3-224ENST00000554040 TARBP1Q13395 1621 aaKnown RBP12.96□□□□□ -0.33
ATXN3-224ENST00000554040 IER5LQ5T953 404 aa12.96□□□□□ -0.33
ATXN3-224ENST00000554040 CHRM1P11229 460 aaPredicted RBP12.95□□□□□ -0.34
ATXN3-224ENST00000554040 SPOCK2Q92563 424 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms