RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 IFT140Q96RY7 1462 aa19.69■□□□□ 0.74
VIPAS39-206ENST00000553888 APLP2Q06481 763 aa19.69■□□□□ 0.74
VIPAS39-206ENST00000553888 EIF4G3O43432 1585 aaKnown RBP19.64■□□□□ 0.73
VIPAS39-206ENST00000553888 KANK4Q5T7N3 995 aaPredicted RBP19.63■□□□□ 0.73
VIPAS39-206ENST00000553888 ADAMTS12P58397 1594 aa19.63■□□□□ 0.73
VIPAS39-206ENST00000553888 GRIN2BQ13224 1484 aa19.62■□□□□ 0.73
VIPAS39-206ENST00000553888 FHOD3Q2V2M9 1422 aa19.62■□□□□ 0.73
VIPAS39-206ENST00000553888 FHAD1B1AJZ9 1412 aa19.59■□□□□ 0.73
VIPAS39-206ENST00000553888 SNAPC4Q5SXM2 1469 aa19.57■□□□□ 0.72
VIPAS39-206ENST00000553888 PCF11O94913 1555 aaKnown RBP19.55■□□□□ 0.72
VIPAS39-206ENST00000553888 ATP1B4Q9UN42 357 aaPredicted RBP19.53■□□□□ 0.72
VIPAS39-206ENST00000553888 EFCAB5A4FU69 1503 aa19.52■□□□□ 0.72
VIPAS39-206ENST00000553888 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.51■□□□□ 0.71
VIPAS39-206ENST00000553888 SAMD9Q5K651 1589 aa19.49■□□□□ 0.71
VIPAS39-206ENST00000553888 HNRNPUL2Q1KMD3 747 aaKnown RBP19.48■□□□□ 0.71
VIPAS39-206ENST00000553888 TIAM1Q13009 1591 aa19.47■□□□□ 0.71
VIPAS39-206ENST00000553888 IQGAP2Q13576 1575 aa19.46■□□□□ 0.71
VIPAS39-206ENST00000553888 FBLN2P98095 1184 aa19.44■□□□□ 0.7
VIPAS39-206ENST00000553888 GRIN2AQ12879 1464 aa19.43■□□□□ 0.7
VIPAS39-206ENST00000553888 CFAP43Q8NDM7 1665 aa19.41■□□□□ 0.7
VIPAS39-206ENST00000553888 LRRIQ1Q96JM4 1722 aa19.41■□□□□ 0.7
VIPAS39-206ENST00000553888 MAGI1Q96QZ7 1491 aaPredicted RBP19.39■□□□□ 0.7
VIPAS39-206ENST00000553888 CHMP7Q8WUX9 453 aaPredicted RBP19.39■□□□□ 0.69
VIPAS39-206ENST00000553888 CASKIN1Q8WXD9 1431 aa19.39■□□□□ 0.69
VIPAS39-206ENST00000553888 FYCO1Q9BQS8 1478 aa19.39■□□□□ 0.69
VIPAS39-206ENST00000553888 LRRC9Q6ZRR7 1453 aa19.37■□□□□ 0.69
VIPAS39-206ENST00000553888 FMN1Q68DA7 1419 aa19.37■□□□□ 0.69
VIPAS39-206ENST00000553888 CEP170Q5SW79 1584 aa19.37■□□□□ 0.69
VIPAS39-206ENST00000553888 SYNJ2O15056 1496 aa19.36■□□□□ 0.69
VIPAS39-206ENST00000553888 CCER1Q8TC90 406 aaPredicted RBP19.36■□□□□ 0.69
VIPAS39-206ENST00000553888 MAP3K1Q13233 1512 aa19.36■□□□□ 0.69
VIPAS39-206ENST00000553888 KIAA0586Q9BVV6 1533 aa19.33■□□□□ 0.68
VIPAS39-206ENST00000553888 UGGT2Q9NYU1 1516 aa19.31■□□□□ 0.68
VIPAS39-206ENST00000553888 PHLDB1Q86UU1 1377 aa19.29■□□□□ 0.68
VIPAS39-206ENST00000553888 RRBP1Q9P2E9 1410 aaKnown RBP19.29■□□□□ 0.68
VIPAS39-206ENST00000553888 ARID3CA6NKF2 412 aa19.29■□□□□ 0.68
VIPAS39-206ENST00000553888 DISP1Q96F81 1524 aa19.29■□□□□ 0.68
VIPAS39-206ENST00000553888 KIAA0556O60303 1618 aa19.27■□□□□ 0.68
VIPAS39-206ENST00000553888 ITGAEP38570 1179 aa19.27■□□□□ 0.67
VIPAS39-206ENST00000553888 ZEB1P37275 1124 aaPredicted RBP19.26■□□□□ 0.67
VIPAS39-206ENST00000553888 CCNB3Q8WWL7 1395 aa19.25■□□□□ 0.67
VIPAS39-206ENST00000553888 CHD1O14646 1710 aa19.23■□□□□ 0.67
VIPAS39-206ENST00000553888 NUP160Q12769 1436 aa19.23■□□□□ 0.67
VIPAS39-206ENST00000553888 MAGI3Q5TCQ9 1506 aa19.2■□□□□ 0.66
VIPAS39-206ENST00000553888 CDK13Q14004 1512 aaKnown RBP19.2■□□□□ 0.66
VIPAS39-206ENST00000553888 MTUS2Q5JR59 1369 aa19.2■□□□□ 0.66
VIPAS39-206ENST00000553888 HECW1Q76N89 1606 aa19.19■□□□□ 0.66
VIPAS39-206ENST00000553888 JPH4Q96JJ6 628 aa19.18■□□□□ 0.66
VIPAS39-206ENST00000553888 SLC24A1O60721 1099 aa19.17■□□□□ 0.66
VIPAS39-206ENST00000553888 FAM50AQ14320 339 aaKnown RBP19.17■□□□□ 0.66
VIPAS39-206ENST00000553888 EPRSP07814 1512 aaKnown RBP19.15■□□□□ 0.66
VIPAS39-206ENST00000553888 CCDC18Q5T9S5 1454 aa19.11■□□□□ 0.65
VIPAS39-206ENST00000553888 RAPGEF6Q8TEU7 1601 aa19.11■□□□□ 0.65
VIPAS39-206ENST00000553888 NCOA2Q15596 1464 aa19.11■□□□□ 0.65
VIPAS39-206ENST00000553888 PLB1Q6P1J6 1458 aa19.1■□□□□ 0.65
VIPAS39-206ENST00000553888 SUPT6HQ7KZ85 1726 aaKnown RBP19.1■□□□□ 0.65
VIPAS39-206ENST00000553888 EHBP1L1Q8N3D4 1523 aa19.1■□□□□ 0.65
VIPAS39-206ENST00000553888 NUP153P49790 1475 aaKnown RBP19.1■□□□□ 0.65
VIPAS39-206ENST00000553888 CARMIL2Q6F5E8 1435 aa19.06■□□□□ 0.64
VIPAS39-206ENST00000553888 FGD6Q6ZV73 1430 aa19.06■□□□□ 0.64
VIPAS39-206ENST00000553888 PRG4Q92954 1404 aaPredicted RBP19.04■□□□□ 0.64
VIPAS39-206ENST00000553888 MYOM3Q5VTT5 1437 aa19.01■□□□□ 0.63
VIPAS39-206ENST00000553888 ARHGEF11O15085 1522 aa19.01■□□□□ 0.63
VIPAS39-206ENST00000553888 DHX57Q6P158 1386 aaKnown RBP18.99■□□□□ 0.63
VIPAS39-206ENST00000553888 ERCC6L2Q5T890 1561 aa18.99■□□□□ 0.63
VIPAS39-206ENST00000553888 RAB3GAP2Q9H2M9 1393 aa18.99■□□□□ 0.63
VIPAS39-206ENST00000553888 PTPN23Q9H3S7 1636 aa18.97■□□□□ 0.63
VIPAS39-206ENST00000553888 PTPRKQ15262 1439 aa18.96■□□□□ 0.63
VIPAS39-206ENST00000553888 ABCA8O94911 1581 aa18.95■□□□□ 0.62
VIPAS39-206ENST00000553888 SHROOM2Q13796 1616 aa18.94■□□□□ 0.62
VIPAS39-206ENST00000553888 SETD5Q9C0A6 1442 aa18.92■□□□□ 0.62
VIPAS39-206ENST00000553888 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.92■□□□□ 0.62
VIPAS39-206ENST00000553888 PELP1Q8IZL8 1130 aaKnown RBP18.91■□□□□ 0.62
VIPAS39-206ENST00000553888 PTPRGP23470 1445 aa18.91■□□□□ 0.62
VIPAS39-206ENST00000553888 KIF14Q15058 1648 aa18.91■□□□□ 0.62
VIPAS39-206ENST00000553888 CLASP1Q7Z460 1538 aa18.88■□□□□ 0.61
VIPAS39-206ENST00000553888 ATP10BO94823 1461 aa18.88■□□□□ 0.61
VIPAS39-206ENST00000553888 CDK11AQ9UQ88 783 aaPredicted RBP18.87■□□□□ 0.61
VIPAS39-206ENST00000553888 TROQ12816 1431 aaPredicted RBP18.87■□□□□ 0.61
VIPAS39-206ENST00000553888 CHIC2Q9UKJ5 165 aa18.86■□□□□ 0.61
VIPAS39-206ENST00000553888 ZNF644Q9H582 1327 aaPredicted RBP18.86■□□□□ 0.61
VIPAS39-206ENST00000553888 TCOF1Q13428 1488 aaKnown RBP18.85■□□□□ 0.61
VIPAS39-206ENST00000553888 MAPKBP1O60336 1514 aa18.81■□□□□ 0.6
VIPAS39-206ENST00000553888 ADCY10Q96PN6 1610 aa18.81■□□□□ 0.6
VIPAS39-206ENST00000553888 RRP7BPQ9NSQ0 103 aa18.8■□□□□ 0.6
VIPAS39-206ENST00000553888 MIA2Q96PC5 1412 aa18.8■□□□□ 0.6
VIPAS39-206ENST00000553888 MYT1Q01538 1121 aa18.8■□□□□ 0.6
VIPAS39-206ENST00000553888 PLEKHD1A6NEE1 506 aa18.79■□□□□ 0.6
VIPAS39-206ENST00000553888 UACAQ9BZF9 1416 aa18.79■□□□□ 0.6
VIPAS39-206ENST00000553888 NAIPQ13075 1403 aa18.78■□□□□ 0.6
VIPAS39-206ENST00000553888 HFM1A2PYH4 1435 aa18.77■□□□□ 0.6
VIPAS39-206ENST00000553888 GPATCH8Q9UKJ3 1502 aaKnown RBP18.77■□□□□ 0.6
VIPAS39-206ENST00000553888 ZNF777Q9ULD5 760 aaPredicted RBP18.77■□□□□ 0.59
VIPAS39-206ENST00000553888 CDC42BPAQ5VT25 1732 aa18.76■□□□□ 0.59
VIPAS39-206ENST00000553888 ITSN2Q9NZM3 1697 aa18.75■□□□□ 0.59
VIPAS39-206ENST00000553888 KDM6BO15054 1643 aa18.75■□□□□ 0.59
VIPAS39-206ENST00000553888 CLSPNQ9HAW4 1339 aa18.75■□□□□ 0.59
VIPAS39-206ENST00000553888 CFDP1Q9UEE9 299 aaPredicted RBP18.74■□□□□ 0.59
VIPAS39-206ENST00000553888 CAMSAP2Q08AD1 1489 aa18.73■□□□□ 0.59
VIPAS39-206ENST00000553888 DAPK1P53355 1430 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms