RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 FBXO41Q8TF61 875 aa26.3■■□□□ 1.8
PTCH1-217ENST00000548420 PRG4Q92954 1404 aaPredicted RBP26.24■■□□□ 1.79
PTCH1-217ENST00000548420 ABCA10Q8WWZ4 1543 aa26.24■■□□□ 1.79
PTCH1-217ENST00000548420 ADAMTS12P58397 1594 aa26.21■■□□□ 1.79
PTCH1-217ENST00000548420 NPM1P06748 294 aaKnown RBP eCLIP26.18■■□□□ 1.78
PTCH1-217ENST00000548420 ADCY10Q96PN6 1610 aa26.16■■□□□ 1.78
PTCH1-217ENST00000548420 JPH4Q96JJ6 628 aa26.13■■□□□ 1.77
PTCH1-217ENST00000548420 FHAD1B1AJZ9 1412 aa26.06■■□□□ 1.76
PTCH1-217ENST00000548420 PPRC1Q5VV67 1664 aaKnown RBP26.02■■□□□ 1.76
PTCH1-217ENST00000548420 COL17A1Q9UMD9 1497 aaPredicted RBP26.01■■□□□ 1.75
PTCH1-217ENST00000548420 LMTK3Q96Q04 1460 aa26■■□□□ 1.75
PTCH1-217ENST00000548420 ILDR2Q71H61 639 aa25.89■■□□□ 1.74
PTCH1-217ENST00000548420 RUSC2Q8N2Y8 1516 aa25.88■■□□□ 1.73
PTCH1-217ENST00000548420 ERICH3Q5RHP9 1530 aa25.83■■□□□ 1.73
PTCH1-217ENST00000548420 SOCS7O14512 581 aa25.82■■□□□ 1.72
PTCH1-217ENST00000548420 WRNQ14191 1432 aaPredicted RBP eCLIP25.81■■□□□ 1.72
PTCH1-217ENST00000548420 GLI2P10070 1586 aa25.81■■□□□ 1.72
PTCH1-217ENST00000548420 ASXL2Q76L83 1435 aa25.74■■□□□ 1.71
PTCH1-217ENST00000548420 TOP2BQ02880 1626 aa25.71■■□□□ 1.71
PTCH1-217ENST00000548420 PLB1Q6P1J6 1458 aa25.67■■□□□ 1.7
PTCH1-217ENST00000548420 ABCC2Q92887 1545 aa25.67■■□□□ 1.7
PTCH1-217ENST00000548420 MAP3K4Q9Y6R4 1608 aa25.64■■□□□ 1.7
PTCH1-217ENST00000548420 PTPRGP23470 1445 aa25.63■■□□□ 1.69
PTCH1-217ENST00000548420 TTBK1Q5TCY1 1321 aaPredicted RBP25.6■■□□□ 1.69
PTCH1-217ENST00000548420 BIVM-ERCC5R4GMW8 1640 aa25.59■■□□□ 1.69
PTCH1-217ENST00000548420 DISP3Q9P2K9 1392 aa25.59■■□□□ 1.69
PTCH1-217ENST00000548420 EPRSP07814 1512 aaKnown RBP25.59■■□□□ 1.69
PTCH1-217ENST00000548420 KIAA0586Q9BVV6 1533 aa25.59■■□□□ 1.69
PTCH1-217ENST00000548420 CUL7Q14999 1698 aa25.58■■□□□ 1.69
PTCH1-217ENST00000548420 TEX14Q8IWB6 1497 aa25.55■■□□□ 1.68
PTCH1-217ENST00000548420 KIF21BO75037 1637 aa25.49■■□□□ 1.67
PTCH1-217ENST00000548420 UHRF1BP1LA0JNW5 1464 aa25.47■■□□□ 1.67
PTCH1-217ENST00000548420 PTPRMP28827 1452 aa25.47■■□□□ 1.67
PTCH1-217ENST00000548420 TNIKQ9UKE5 1360 aa25.45■■□□□ 1.67
PTCH1-217ENST00000548420 CERKQ8TCT0 537 aa25.41■■□□□ 1.66
PTCH1-217ENST00000548420 PCF11O94913 1555 aaKnown RBP25.39■■□□□ 1.66
PTCH1-217ENST00000548420 ADAMTSL3P82987 1691 aa25.39■■□□□ 1.65
PTCH1-217ENST00000548420 UACAQ9BZF9 1416 aa25.38■■□□□ 1.65
PTCH1-217ENST00000548420 KDM5BQ9UGL1 1544 aa25.38■■□□□ 1.65
PTCH1-217ENST00000548420 ZCCHC11Q5TAX3 1644 aaKnown RBP25.33■■□□□ 1.65
PTCH1-217ENST00000548420 CARMIL2Q6F5E8 1435 aa25.3■■□□□ 1.64
PTCH1-217ENST00000548420 IGF1RP08069 1367 aa25.3■■□□□ 1.64
PTCH1-217ENST00000548420 HSPA2P54652 639 aa25.28■■□□□ 1.64
PTCH1-217ENST00000548420 MAGI3Q5TCQ9 1506 aa25.27■■□□□ 1.64
PTCH1-217ENST00000548420 SPATA31D1Q6ZQQ2 1576 aa25.25■■□□□ 1.63
PTCH1-217ENST00000548420 CD109Q6YHK3 1445 aa25.24■■□□□ 1.63
PTCH1-217ENST00000548420 WDR7Q9Y4E6 1490 aa25.23■■□□□ 1.63
PTCH1-217ENST00000548420 DISP1Q96F81 1524 aa25.21■■□□□ 1.63
PTCH1-217ENST00000548420 MADDQ8WXG6 1647 aa25.19■■□□□ 1.62
PTCH1-217ENST00000548420 CFAP43Q8NDM7 1665 aa25.17■■□□□ 1.62
PTCH1-217ENST00000548420 BCORL1Q5H9F3 1711 aa25.15■■□□□ 1.62
PTCH1-217ENST00000548420 ARAP3Q8WWN8 1544 aa25.13■■□□□ 1.61
PTCH1-217ENST00000548420 KCNH8Q96L42 1107 aa25.12■■□□□ 1.61
PTCH1-217ENST00000548420 IQGAP2Q13576 1575 aa25.12■■□□□ 1.61
PTCH1-217ENST00000548420 RIMS1Q86UR5 1692 aaKnown RBP25.04■■□□□ 1.6
PTCH1-217ENST00000548420 CARMIL1Q5VZK9 1371 aa25.03■■□□□ 1.6
PTCH1-217ENST00000548420 RAPGEF3O95398 923 aa25.01■■□□□ 1.59
PTCH1-217ENST00000548420 KIF27Q86VH2 1401 aa25■■□□□ 1.59
PTCH1-217ENST00000548420 ARID4BQ4LE39 1312 aaPredicted RBP24.99■■□□□ 1.59
PTCH1-217ENST00000548420 PLPPR3Q6T4P5 718 aa24.97■■□□□ 1.59
PTCH1-217ENST00000548420 KIAA0556O60303 1618 aa24.95■■□□□ 1.58
PTCH1-217ENST00000548420 UGGT2Q9NYU1 1516 aa24.95■■□□□ 1.58
PTCH1-217ENST00000548420 FRMPD1Q5SYB0 1578 aa24.9■■□□□ 1.58
PTCH1-217ENST00000548420 ABCA8O94911 1581 aa24.84■■□□□ 1.57
PTCH1-217ENST00000548420 SUPT5HO00267 1087 aaKnown RBP24.84■■□□□ 1.57
PTCH1-217ENST00000548420 PHLDB1Q86UU1 1377 aa24.83■■□□□ 1.57
PTCH1-217ENST00000548420 STRCQ7RTU9 1775 aa24.82■■□□□ 1.56
PTCH1-217ENST00000548420 SIGLEC1Q9BZZ2 1709 aa24.79■■□□□ 1.56
PTCH1-217ENST00000548420 YEATS2Q9ULM3 1422 aa24.78■■□□□ 1.56
PTCH1-217ENST00000548420 ARHGEF40Q8TER5 1519 aa24.76■■□□□ 1.55
PTCH1-217ENST00000548420 ABCA9Q8IUA7 1624 aa24.75■■□□□ 1.55
PTCH1-217ENST00000548420 NEO1Q92859 1461 aa24.74■■□□□ 1.55
PTCH1-217ENST00000548420 ARID3CA6NKF2 412 aa24.7■■□□□ 1.54
PTCH1-217ENST00000548420 LTBP4Q8N2S1 1624 aa24.69■■□□□ 1.54
PTCH1-217ENST00000548420 DMRT2Q9Y5R5 561 aa24.69■■□□□ 1.54
PTCH1-217ENST00000548420 TTC37Q6PGP7 1564 aa24.67■■□□□ 1.54
PTCH1-217ENST00000548420 PREX1Q8TCU6 1659 aa24.66■■□□□ 1.54
PTCH1-217ENST00000548420 ATP10BO94823 1461 aa24.65■■□□□ 1.54
PTCH1-217ENST00000548420 MLECQ14165 292 aa24.65■■□□□ 1.54
PTCH1-217ENST00000548420 RICTORQ6R327 1708 aa24.64■■□□□ 1.54
PTCH1-217ENST00000548420 FER1L4A9Z1Z3 1794 aa24.64■■□□□ 1.53
PTCH1-217ENST00000548420 POGZQ7Z3K3 1410 aa24.63■■□□□ 1.53
PTCH1-217ENST00000548420 FANCAO15360 1455 aa24.63■■□□□ 1.53
PTCH1-217ENST00000548420 CEBPAP49715 358 aaPredicted RBP24.62■■□□□ 1.53
PTCH1-217ENST00000548420 RAPGEF2Q9Y4G8 1499 aa24.61■■□□□ 1.53
PTCH1-217ENST00000548420 PTPRTO14522 1441 aa24.6■■□□□ 1.53
PTCH1-217ENST00000548420 IQSEC2Q5JU85 1478 aa24.58■■□□□ 1.53
PTCH1-217ENST00000548420 AKNAQ7Z591 1439 aa24.58■■□□□ 1.53
PTCH1-217ENST00000548420 DENND4BO75064 1496 aaPredicted RBP24.58■■□□□ 1.52
PTCH1-217ENST00000548420 FHOD3Q2V2M9 1422 aa24.57■■□□□ 1.52
PTCH1-217ENST00000548420 GOLGA3Q08378 1498 aa24.52■■□□□ 1.52
PTCH1-217ENST00000548420 ARHGEF12Q9NZN5 1544 aa24.51■■□□□ 1.51
PTCH1-217ENST00000548420 ZFYVE16Q7Z3T8 1539 aa24.51■■□□□ 1.51
PTCH1-217ENST00000548420 ZMYM4Q5VZL5 1548 aa24.5■■□□□ 1.51
PTCH1-217ENST00000548420 MED1Q15648 1581 aaPredicted RBP24.47■■□□□ 1.51
PTCH1-217ENST00000548420 CTTNBP2Q8WZ74 1663 aa24.46■■□□□ 1.51
PTCH1-217ENST00000548420 UHRF1BP1Q6BDS2 1440 aa24.46■■□□□ 1.51
PTCH1-217ENST00000548420 SETD1BQ9UPS6 1966 aaKnown RBP24.45■■□□□ 1.5
PTCH1-217ENST00000548420 UBAP1LF5GYI3 381 aa24.44■■□□□ 1.5
PTCH1-217ENST00000548420 EFCAB5A4FU69 1503 aa24.44■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms