RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 CARMIL1Q5VZK9 1371 aa16.06■□□□□ 0.16
YBX3-218ENST00000546298 ERCC6L2Q5T890 1561 aa16.04■□□□□ 0.16
YBX3-218ENST00000546298 SHROOM2Q13796 1616 aa16.04■□□□□ 0.16
YBX3-218ENST00000546298 KIAA0586Q9BVV6 1533 aa16.03■□□□□ 0.16
YBX3-218ENST00000546298 NPM1P06748 294 aaKnown RBP eCLIP15.99■□□□□ 0.15
YBX3-218ENST00000546298 CUL7Q14999 1698 aa15.98■□□□□ 0.15
YBX3-218ENST00000546298 RUSC2Q8N2Y8 1516 aa15.96■□□□□ 0.15
YBX3-218ENST00000546298 CARMIL2Q6F5E8 1435 aa15.91■□□□□ 0.14
YBX3-218ENST00000546298 PTPRGP23470 1445 aa15.9■□□□□ 0.14
YBX3-218ENST00000546298 RAPGEF2Q9Y4G8 1499 aa15.89■□□□□ 0.13
YBX3-218ENST00000546298 TNIKQ9UKE5 1360 aa15.87■□□□□ 0.13
YBX3-218ENST00000546298 TTBK1Q5TCY1 1321 aaPredicted RBP15.86■□□□□ 0.13
YBX3-218ENST00000546298 FAM69CQ0P6D2 419 aa15.84■□□□□ 0.13
YBX3-218ENST00000546298 IQGAP2Q13576 1575 aa15.81■□□□□ 0.12
YBX3-218ENST00000546298 ABCC10Q5T3U5 1492 aa15.79■□□□□ 0.12
YBX3-218ENST00000546298 MAPKBP1O60336 1514 aa15.78■□□□□ 0.12
YBX3-218ENST00000546298 UACAQ9BZF9 1416 aa15.76■□□□□ 0.11
YBX3-218ENST00000546298 ADCY10Q96PN6 1610 aa15.76■□□□□ 0.11
YBX3-218ENST00000546298 CSRNP3Q8WYN3 585 aa15.75■□□□□ 0.11
YBX3-218ENST00000546298 PRXQ9BXM0 1461 aa15.75■□□□□ 0.11
YBX3-218ENST00000546298 DISP1Q96F81 1524 aa15.74■□□□□ 0.11
YBX3-218ENST00000546298 UGGT2Q9NYU1 1516 aa15.74■□□□□ 0.11
YBX3-218ENST00000546298 ABCC2Q92887 1545 aa15.73■□□□□ 0.11
YBX3-218ENST00000546298 UHRF1BP1LA0JNW5 1464 aa15.73■□□□□ 0.11
YBX3-218ENST00000546298 FAM9AQ8IZU1 332 aaPredicted RBP15.73■□□□□ 0.11
YBX3-218ENST00000546298 GOLGA3Q08378 1498 aa15.71■□□□□ 0.1
YBX3-218ENST00000546298 PLB1Q6P1J6 1458 aa15.7■□□□□ 0.1
YBX3-218ENST00000546298 EEA1Q15075 1411 aa15.68■□□□□ 0.1
YBX3-218ENST00000546298 ASXL2Q76L83 1435 aa15.68■□□□□ 0.1
YBX3-218ENST00000546298 DIP2BQ9P265 1576 aa15.66■□□□□ 0.1
YBX3-218ENST00000546298 KIAA0556O60303 1618 aa15.65■□□□□ 0.1
YBX3-218ENST00000546298 KDM5BQ9UGL1 1544 aa15.64■□□□□ 0.09
YBX3-218ENST00000546298 KIF13AQ9H1H9 1805 aa15.63■□□□□ 0.09
YBX3-218ENST00000546298 P3H3Q8IVL6 736 aa15.59■□□□□ 0.09
YBX3-218ENST00000546298 GLI2P10070 1586 aa15.57■□□□□ 0.08
YBX3-218ENST00000546298 EPRSP07814 1512 aaKnown RBP15.56■□□□□ 0.08
YBX3-218ENST00000546298 CTTNBP2Q8WZ74 1663 aa15.55■□□□□ 0.08
YBX3-218ENST00000546298 KCNH8Q96L42 1107 aa15.54■□□□□ 0.08
YBX3-218ENST00000546298 WDR7Q9Y4E6 1490 aa15.53■□□□□ 0.08
YBX3-218ENST00000546298 ABCA8O94911 1581 aa15.52■□□□□ 0.07
YBX3-218ENST00000546298 KDM6BO15054 1643 aa15.51■□□□□ 0.07
YBX3-218ENST00000546298 RANGAP1P46060 587 aaPredicted RBP15.51■□□□□ 0.07
YBX3-218ENST00000546298 TEX14Q8IWB6 1497 aa15.5■□□□□ 0.07
YBX3-218ENST00000546298 ZCCHC11Q5TAX3 1644 aaKnown RBP15.5■□□□□ 0.07
YBX3-218ENST00000546298 ARID3CA6NKF2 412 aa15.49■□□□□ 0.07
YBX3-218ENST00000546298 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.47■□□□□ 0.07
YBX3-218ENST00000546298 HNRNPUL2Q1KMD3 747 aaKnown RBP15.47■□□□□ 0.07
YBX3-218ENST00000546298 CD109Q6YHK3 1445 aa15.46■□□□□ 0.07
YBX3-218ENST00000546298 UBTFP17480 764 aaKnown RBP15.46■□□□□ 0.07
YBX3-218ENST00000546298 TSPOAP1O95153 1857 aa15.45■□□□□ 0.06
YBX3-218ENST00000546298 ATP10BO94823 1461 aa15.45■□□□□ 0.06
YBX3-218ENST00000546298 SAMD9Q5K651 1589 aa15.43■□□□□ 0.06
YBX3-218ENST00000546298 MAGI3Q5TCQ9 1506 aa15.42■□□□□ 0.06
YBX3-218ENST00000546298 MAP3K4Q9Y6R4 1608 aa15.41■□□□□ 0.06
YBX3-218ENST00000546298 FHOD3Q2V2M9 1422 aa15.41■□□□□ 0.06
YBX3-218ENST00000546298 COL17A1Q9UMD9 1497 aaPredicted RBP15.4■□□□□ 0.06
YBX3-218ENST00000546298 KIF21BO75037 1637 aa15.4■□□□□ 0.06
YBX3-218ENST00000546298 PLEKHD1A6NEE1 506 aa15.4■□□□□ 0.06
YBX3-218ENST00000546298 EHMT2Q96KQ7 1210 aa15.4■□□□□ 0.06
YBX3-218ENST00000546298 KDM4FA0A1W2PPD8 638 aa15.39■□□□□ 0.05
YBX3-218ENST00000546298 PPRC1Q5VV67 1664 aaKnown RBP15.38■□□□□ 0.05
YBX3-218ENST00000546298 PHLDB1Q86UU1 1377 aa15.37■□□□□ 0.05
YBX3-218ENST00000546298 EFCAB5A4FU69 1503 aa15.37■□□□□ 0.05
YBX3-218ENST00000546298 NUP153P49790 1475 aaKnown RBP15.35■□□□□ 0.05
YBX3-218ENST00000546298 RAPGEF6Q8TEU7 1601 aa15.35■□□□□ 0.05
YBX3-218ENST00000546298 CFAP43Q8NDM7 1665 aa15.32■□□□□ 0.04
YBX3-218ENST00000546298 ATP1B4Q9UN42 357 aaPredicted RBP15.31■□□□□ 0.04
YBX3-218ENST00000546298 FMN1Q68DA7 1419 aa15.3■□□□□ 0.04
YBX3-218ENST00000546298 CDK11AQ9UQ88 783 aaPredicted RBP15.29■□□□□ 0.04
YBX3-218ENST00000546298 ARAP3Q8WWN8 1544 aa15.28■□□□□ 0.04
YBX3-218ENST00000546298 NEO1Q92859 1461 aa15.27■□□□□ 0.03
YBX3-218ENST00000546298 ADGRL1O94910 1474 aa15.26■□□□□ 0.03
YBX3-218ENST00000546298 ABCA9Q8IUA7 1624 aa15.25■□□□□ 0.03
YBX3-218ENST00000546298 ARHGAP35Q9NRY4 1499 aa15.25■□□□□ 0.03
YBX3-218ENST00000546298 RAPGEF3O95398 923 aa15.24■□□□□ 0.03
YBX3-218ENST00000546298 SENP3Q9H4L4 574 aaPredicted RBP15.23■□□□□ 0.03
YBX3-218ENST00000546298 AKNAQ7Z591 1439 aa15.19■□□□□ 0.02
YBX3-218ENST00000546298 CDK13Q14004 1512 aaKnown RBP15.18■□□□□ 0.02
YBX3-218ENST00000546298 DENND4BO75064 1496 aaPredicted RBP15.18■□□□□ 0.02
YBX3-218ENST00000546298 FANCAO15360 1455 aa15.17■□□□□ 0.02
YBX3-218ENST00000546298 EFCAB2Q5VUJ9 269 aa15.17■□□□□ 0.02
YBX3-218ENST00000546298 HECW1Q76N89 1606 aa15.16■□□□□ 0.02
YBX3-218ENST00000546298 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.16■□□□□ 0.02
YBX3-218ENST00000546298 PLCH2O75038 1416 aa15.16■□□□□ 0.02
YBX3-218ENST00000546298 CLIP1P30622 1438 aa15.15■□□□□ 0.02
YBX3-218ENST00000546298 ARID4BQ4LE39 1312 aaPredicted RBP15.15■□□□□ 0.02
YBX3-218ENST00000546298 TROQ12816 1431 aaPredicted RBP15.14■□□□□ 0.01
YBX3-218ENST00000546298 CASKIN1Q8WXD9 1431 aa15.12■□□□□ 0.01
YBX3-218ENST00000546298 SCAPERQ9BY12 1400 aa15.11■□□□□ 0.01
YBX3-218ENST00000546298 TTC37Q6PGP7 1564 aa15.09■□□□□ 0.01
YBX3-218ENST00000546298 CCDC18Q5T9S5 1454 aa15.08■□□□□ 0.01
YBX3-218ENST00000546298 CFAP74Q9C0B2 1584 aa15.08■□□□□ 0
YBX3-218ENST00000546298 MAGI2Q86UL8 1455 aa15.08■□□□□ 0
YBX3-218ENST00000546298 POGZQ7Z3K3 1410 aa15.05■□□□□ -0
YBX3-218ENST00000546298 FRMPD1Q5SYB0 1578 aa15.05■□□□□ -0
YBX3-218ENST00000546298 KIF14Q15058 1648 aa15.03■□□□□ -0
YBX3-218ENST00000546298 FYCO1Q9BQS8 1478 aa15.03■□□□□ -0
YBX3-218ENST00000546298 MYT1LQ9UL68 1186 aa15.03■□□□□ -0
YBX3-218ENST00000546298 AFAP1Q8N556 730 aa15.02■□□□□ -0
YBX3-218ENST00000546298 ARHGAP5Q13017 1502 aa15.02□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 123.8 ms