RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 ERCC6L2Q5T890 1561 aa19.48■□□□□ 0.71
YBX3-216ENST00000544622 KIAA0586Q9BVV6 1533 aa19.45■□□□□ 0.7
YBX3-216ENST00000544622 PRG4Q92954 1404 aaPredicted RBP19.42■□□□□ 0.7
YBX3-216ENST00000544622 RAPGEF2Q9Y4G8 1499 aa19.39■□□□□ 0.69
YBX3-216ENST00000544622 PRXQ9BXM0 1461 aa19.34■□□□□ 0.69
YBX3-216ENST00000544622 CHIC1Q5VXU3 224 aa19.29■□□□□ 0.68
YBX3-216ENST00000544622 CSRNP3Q8WYN3 585 aa19.27■□□□□ 0.68
YBX3-216ENST00000544622 IQGAP2Q13576 1575 aa19.27■□□□□ 0.67
YBX3-216ENST00000544622 EEA1Q15075 1411 aa19.24■□□□□ 0.67
YBX3-216ENST00000544622 DISP1Q96F81 1524 aa19.2■□□□□ 0.66
YBX3-216ENST00000544622 UGGT2Q9NYU1 1516 aa19.2■□□□□ 0.66
YBX3-216ENST00000544622 CARMIL2Q6F5E8 1435 aa19.2■□□□□ 0.66
YBX3-216ENST00000544622 TNIKQ9UKE5 1360 aa19.18■□□□□ 0.66
YBX3-216ENST00000544622 TRHP20396 242 aaPredicted RBP19.17■□□□□ 0.66
YBX3-216ENST00000544622 PTPRGP23470 1445 aa19.17■□□□□ 0.66
YBX3-216ENST00000544622 CTTNBP2Q8WZ74 1663 aa19.12■□□□□ 0.65
YBX3-216ENST00000544622 ADCY10Q96PN6 1610 aa19.12■□□□□ 0.65
YBX3-216ENST00000544622 FAM9AQ8IZU1 332 aaPredicted RBP19.09■□□□□ 0.65
YBX3-216ENST00000544622 KIAA0556O60303 1618 aa19.09■□□□□ 0.65
YBX3-216ENST00000544622 UHRF1BP1LA0JNW5 1464 aa19.06■□□□□ 0.64
YBX3-216ENST00000544622 NPM1P06748 294 aaKnown RBP eCLIP19.06■□□□□ 0.64
YBX3-216ENST00000544622 MAPKBP1O60336 1514 aa19.05■□□□□ 0.64
YBX3-216ENST00000544622 GOLGA3Q08378 1498 aa19.05■□□□□ 0.64
YBX3-216ENST00000544622 UACAQ9BZF9 1416 aa19.05■□□□□ 0.64
YBX3-216ENST00000544622 TTBK1Q5TCY1 1321 aaPredicted RBP19.03■□□□□ 0.64
YBX3-216ENST00000544622 KIF21BO75037 1637 aa19.03■□□□□ 0.64
YBX3-216ENST00000544622 ABCC2Q92887 1545 aa19.02■□□□□ 0.64
YBX3-216ENST00000544622 ABCC10Q5T3U5 1492 aa18.99■□□□□ 0.63
YBX3-216ENST00000544622 KDM5BQ9UGL1 1544 aa18.97■□□□□ 0.63
YBX3-216ENST00000544622 SAMD9Q5K651 1589 aa18.95■□□□□ 0.62
YBX3-216ENST00000544622 PLB1Q6P1J6 1458 aa18.95■□□□□ 0.62
YBX3-216ENST00000544622 KIF13AQ9H1H9 1805 aa18.95■□□□□ 0.62
YBX3-216ENST00000544622 FAM69CQ0P6D2 419 aa18.93■□□□□ 0.62
YBX3-216ENST00000544622 ABCA8O94911 1581 aa18.93■□□□□ 0.62
YBX3-216ENST00000544622 DIP2BQ9P265 1576 aa18.92■□□□□ 0.62
YBX3-216ENST00000544622 P3H3Q8IVL6 736 aa18.91■□□□□ 0.62
YBX3-216ENST00000544622 ASXL2Q76L83 1435 aa18.91■□□□□ 0.62
YBX3-216ENST00000544622 ZCCHC11Q5TAX3 1644 aaKnown RBP18.85■□□□□ 0.61
YBX3-216ENST00000544622 UBTFP17480 764 aaKnown RBP18.85■□□□□ 0.61
YBX3-216ENST00000544622 GLI2P10070 1586 aa18.83■□□□□ 0.6
YBX3-216ENST00000544622 RANGAP1P46060 587 aaPredicted RBP18.82■□□□□ 0.6
YBX3-216ENST00000544622 EFCAB5A4FU69 1503 aa18.82■□□□□ 0.6
YBX3-216ENST00000544622 FHOD3Q2V2M9 1422 aa18.82■□□□□ 0.6
YBX3-216ENST00000544622 EHMT2Q96KQ7 1210 aa18.81■□□□□ 0.6
YBX3-216ENST00000544622 EPRSP07814 1512 aaKnown RBP18.8■□□□□ 0.6
YBX3-216ENST00000544622 ATP10BO94823 1461 aa18.79■□□□□ 0.6
YBX3-216ENST00000544622 WDR7Q9Y4E6 1490 aa18.77■□□□□ 0.6
YBX3-216ENST00000544622 RAPGEF6Q8TEU7 1601 aa18.75■□□□□ 0.59
YBX3-216ENST00000544622 ARHGAP35Q9NRY4 1499 aa18.75■□□□□ 0.59
YBX3-216ENST00000544622 NUP153P49790 1475 aaKnown RBP18.74■□□□□ 0.59
YBX3-216ENST00000544622 MAP3K4Q9Y6R4 1608 aa18.71■□□□□ 0.58
YBX3-216ENST00000544622 PPRC1Q5VV67 1664 aaKnown RBP18.7■□□□□ 0.58
YBX3-216ENST00000544622 ARID3CA6NKF2 412 aa18.69■□□□□ 0.58
YBX3-216ENST00000544622 KCNH8Q96L42 1107 aa18.68■□□□□ 0.58
YBX3-216ENST00000544622 TSPOAP1O95153 1857 aa18.67■□□□□ 0.58
YBX3-216ENST00000544622 FMN1Q68DA7 1419 aa18.66■□□□□ 0.58
YBX3-216ENST00000544622 CD109Q6YHK3 1445 aa18.63■□□□□ 0.57
YBX3-216ENST00000544622 MAGI3Q5TCQ9 1506 aa18.63■□□□□ 0.57
YBX3-216ENST00000544622 TEX14Q8IWB6 1497 aa18.61■□□□□ 0.57
YBX3-216ENST00000544622 COL17A1Q9UMD9 1497 aaPredicted RBP18.61■□□□□ 0.57
YBX3-216ENST00000544622 CFAP43Q8NDM7 1665 aa18.6■□□□□ 0.57
YBX3-216ENST00000544622 KDM6BO15054 1643 aa18.6■□□□□ 0.57
YBX3-216ENST00000544622 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.6■□□□□ 0.57
YBX3-216ENST00000544622 HNRNPUL2Q1KMD3 747 aaKnown RBP18.6■□□□□ 0.57
YBX3-216ENST00000544622 PLEKHD1A6NEE1 506 aa18.59■□□□□ 0.57
YBX3-216ENST00000544622 ABCA9Q8IUA7 1624 aa18.58■□□□□ 0.56
YBX3-216ENST00000544622 CLIP1P30622 1438 aa18.56■□□□□ 0.56
YBX3-216ENST00000544622 CDK13Q14004 1512 aaKnown RBP18.55■□□□□ 0.56
YBX3-216ENST00000544622 HECW1Q76N89 1606 aa18.53■□□□□ 0.56
YBX3-216ENST00000544622 CASKIN1Q8WXD9 1431 aa18.52■□□□□ 0.56
YBX3-216ENST00000544622 ATP1B4Q9UN42 357 aaPredicted RBP18.49■□□□□ 0.55
YBX3-216ENST00000544622 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.49■□□□□ 0.55
YBX3-216ENST00000544622 PHLDB1Q86UU1 1377 aa18.48■□□□□ 0.55
YBX3-216ENST00000544622 LOC105371045A0A1W2PR82 267 aa18.48■□□□□ 0.55
YBX3-216ENST00000544622 ARAP3Q8WWN8 1544 aa18.48■□□□□ 0.55
YBX3-216ENST00000544622 LRRIQ1Q96JM4 1722 aa18.47■□□□□ 0.55
YBX3-216ENST00000544622 CDK11AQ9UQ88 783 aaPredicted RBP18.47■□□□□ 0.55
YBX3-216ENST00000544622 PCF11O94913 1555 aaKnown RBP18.46■□□□□ 0.55
YBX3-216ENST00000544622 CEP162Q5TB80 1403 aa18.45■□□□□ 0.54
YBX3-216ENST00000544622 NEO1Q92859 1461 aa18.45■□□□□ 0.54
YBX3-216ENST00000544622 FYCO1Q9BQS8 1478 aa18.45■□□□□ 0.54
YBX3-216ENST00000544622 TROQ12816 1431 aaPredicted RBP18.43■□□□□ 0.54
YBX3-216ENST00000544622 CCDC18Q5T9S5 1454 aa18.42■□□□□ 0.54
YBX3-216ENST00000544622 TTC37Q6PGP7 1564 aa18.42■□□□□ 0.54
YBX3-216ENST00000544622 PLCH2O75038 1416 aa18.4■□□□□ 0.54
YBX3-216ENST00000544622 AKNAQ7Z591 1439 aa18.37■□□□□ 0.53
YBX3-216ENST00000544622 FANCAO15360 1455 aa18.37■□□□□ 0.53
YBX3-216ENST00000544622 KIF14Q15058 1648 aa18.37■□□□□ 0.53
YBX3-216ENST00000544622 RAPGEF3O95398 923 aa18.36■□□□□ 0.53
YBX3-216ENST00000544622 KDM4FA0A1W2PPD8 638 aa18.35■□□□□ 0.53
YBX3-216ENST00000544622 FRMPD1Q5SYB0 1578 aa18.3■□□□□ 0.52
YBX3-216ENST00000544622 CFAP74Q9C0B2 1584 aa18.3■□□□□ 0.52
YBX3-216ENST00000544622 EFCAB2Q5VUJ9 269 aa18.3■□□□□ 0.52
YBX3-216ENST00000544622 DENND4BO75064 1496 aaPredicted RBP18.29■□□□□ 0.52
YBX3-216ENST00000544622 MYO5CQ9NQX4 1742 aa18.27■□□□□ 0.52
YBX3-216ENST00000544622 AEBP2Q6ZN18 517 aaPredicted RBP18.26■□□□□ 0.51
YBX3-216ENST00000544622 RICTORQ6R327 1708 aa18.26■□□□□ 0.51
YBX3-216ENST00000544622 ADGRL1O94910 1474 aa18.26■□□□□ 0.51
YBX3-216ENST00000544622 VPS8Q8N3P4 1428 aa18.25■□□□□ 0.51
YBX3-216ENST00000544622 SCAPERQ9BY12 1400 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms