RNA–Protein interactions for RNA: ENST00000543356.6

GNE-206, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

TSL 1 (best) BASIC

Gene GNE, Length 2,576 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-206ENST00000543356 SNAPC4Q5SXM2 1469 aa14.64□□□□□ -0.07
GNE-206ENST00000543356 RANGAP1P46060 587 aaPredicted RBP14.6□□□□□ -0.07
GNE-206ENST00000543356 TRIM26Q12899 539 aaPredicted RBP14.6□□□□□ -0.07
GNE-206ENST00000543356 SAMD9Q5K651 1589 aa14.59□□□□□ -0.07
GNE-206ENST00000543356 GRIN2AQ12879 1464 aa14.57□□□□□ -0.08
GNE-206ENST00000543356 SYNJ2O15056 1496 aa14.57□□□□□ -0.08
GNE-206ENST00000543356 IQGAP2Q13576 1575 aa14.56□□□□□ -0.08
GNE-206ENST00000543356 PCGF6Q9BYE7 350 aa14.54□□□□□ -0.08
GNE-206ENST00000543356 KIAA0586Q9BVV6 1533 aa14.5□□□□□ -0.09
GNE-206ENST00000543356 UGGT2Q9NYU1 1516 aa14.5□□□□□ -0.09
GNE-206ENST00000543356 CEP170Q5SW79 1584 aa14.49□□□□□ -0.09
GNE-206ENST00000543356 FHOD3Q2V2M9 1422 aa14.49□□□□□ -0.09
GNE-206ENST00000543356 PCF11O94913 1555 aaKnown RBP14.48□□□□□ -0.09
GNE-206ENST00000543356 MAP3K1Q13233 1512 aa14.48□□□□□ -0.09
GNE-206ENST00000543356 NUP160Q12769 1436 aa14.47□□□□□ -0.09
GNE-206ENST00000543356 PPARGC1BQ86YN6 1023 aaKnown RBP14.47□□□□□ -0.09
GNE-206ENST00000543356 APLP2Q06481 763 aa14.47□□□□□ -0.09
GNE-206ENST00000543356 FYCO1Q9BQS8 1478 aa14.46□□□□□ -0.09
GNE-206ENST00000543356 FMN1Q68DA7 1419 aa14.46□□□□□ -0.09
GNE-206ENST00000543356 CFAP43Q8NDM7 1665 aa14.45□□□□□ -0.1
GNE-206ENST00000543356 CHMP7Q8WUX9 453 aaPredicted RBP14.45□□□□□ -0.1
GNE-206ENST00000543356 CASKIN1Q8WXD9 1431 aa14.44□□□□□ -0.1
GNE-206ENST00000543356 TIAM1Q13009 1591 aa14.44□□□□□ -0.1
GNE-206ENST00000543356 CHD1O14646 1710 aa14.43□□□□□ -0.1
GNE-206ENST00000543356 KIAA0556O60303 1618 aa14.42□□□□□ -0.1
GNE-206ENST00000543356 P3H3Q8IVL6 736 aa14.41□□□□□ -0.1
GNE-206ENST00000543356 DISP1Q96F81 1524 aa14.4□□□□□ -0.1
GNE-206ENST00000543356 FBLN2P98095 1184 aa14.37□□□□□ -0.11
GNE-206ENST00000543356 TTBK1Q5TCY1 1321 aaPredicted RBP14.36□□□□□ -0.11
GNE-206ENST00000543356 LRRIQ1Q96JM4 1722 aa14.35□□□□□ -0.11
GNE-206ENST00000543356 HECW1Q76N89 1606 aa14.35□□□□□ -0.11
GNE-206ENST00000543356 LRRC9Q6ZRR7 1453 aa14.35□□□□□ -0.11
GNE-206ENST00000543356 KANK4Q5T7N3 995 aaPredicted RBP14.33□□□□□ -0.11
GNE-206ENST00000543356 PELP1Q8IZL8 1130 aaKnown RBP14.32□□□□□ -0.12
GNE-206ENST00000543356 CCDC18Q5T9S5 1454 aa14.31□□□□□ -0.12
GNE-206ENST00000543356 SHROOM2Q13796 1616 aa14.31□□□□□ -0.12
GNE-206ENST00000543356 CARMIL2Q6F5E8 1435 aa14.31□□□□□ -0.12
GNE-206ENST00000543356 RAPGEF6Q8TEU7 1601 aa14.28□□□□□ -0.12
GNE-206ENST00000543356 JPH4Q96JJ6 628 aa14.28□□□□□ -0.12
GNE-206ENST00000543356 CLASP1Q7Z460 1538 aa14.27□□□□□ -0.12
GNE-206ENST00000543356 RRBP1Q9P2E9 1410 aaKnown RBP14.27□□□□□ -0.13
GNE-206ENST00000543356 EPRSP07814 1512 aaKnown RBP14.25□□□□□ -0.13
GNE-206ENST00000543356 EHBP1L1Q8N3D4 1523 aa14.25□□□□□ -0.13
GNE-206ENST00000543356 ATP1B4Q9UN42 357 aaPredicted RBP14.25□□□□□ -0.13
GNE-206ENST00000543356 PRG4Q92954 1404 aaPredicted RBP14.23□□□□□ -0.13
GNE-206ENST00000543356 NUP153P49790 1475 aaKnown RBP14.22□□□□□ -0.13
GNE-206ENST00000543356 SUPT6HQ7KZ85 1726 aaKnown RBP14.21□□□□□ -0.13
GNE-206ENST00000543356 ABCA8O94911 1581 aa14.21□□□□□ -0.13
GNE-206ENST00000543356 CDK13Q14004 1512 aaKnown RBP14.2□□□□□ -0.14
GNE-206ENST00000543356 MAGI3Q5TCQ9 1506 aa14.2□□□□□ -0.14
GNE-206ENST00000543356 MTUS2Q5JR59 1369 aa14.2□□□□□ -0.14
GNE-206ENST00000543356 CCNB3Q8WWL7 1395 aa14.19□□□□□ -0.14
GNE-206ENST00000543356 HRCP23327 699 aa14.19□□□□□ -0.14
GNE-206ENST00000543356 PHLDB1Q86UU1 1377 aa14.18□□□□□ -0.14
GNE-206ENST00000543356 ARHGEF11O15085 1522 aa14.18□□□□□ -0.14
GNE-206ENST00000543356 PLB1Q6P1J6 1458 aa14.18□□□□□ -0.14
GNE-206ENST00000543356 NCOA2Q15596 1464 aa14.15□□□□□ -0.14
GNE-206ENST00000543356 ERCC6L2Q5T890 1561 aa14.14□□□□□ -0.15
GNE-206ENST00000543356 PTPRGP23470 1445 aa14.13□□□□□ -0.15
GNE-206ENST00000543356 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.12□□□□□ -0.15
GNE-206ENST00000543356 ADCY10Q96PN6 1610 aa14.11□□□□□ -0.15
GNE-206ENST00000543356 MYOM3Q5VTT5 1437 aa14.11□□□□□ -0.15
GNE-206ENST00000543356 FGD6Q6ZV73 1430 aa14.11□□□□□ -0.15
GNE-206ENST00000543356 HNRNPUL2Q1KMD3 747 aaKnown RBP14.09□□□□□ -0.15
GNE-206ENST00000543356 TROQ12816 1431 aaPredicted RBP14.08□□□□□ -0.16
GNE-206ENST00000543356 UACAQ9BZF9 1416 aa14.08□□□□□ -0.16
GNE-206ENST00000543356 CDK11AQ9UQ88 783 aaPredicted RBP14.08□□□□□ -0.16
GNE-206ENST00000543356 ABCC2Q92887 1545 aa14.07□□□□□ -0.16
GNE-206ENST00000543356 ATP10BO94823 1461 aa14.07□□□□□ -0.16
GNE-206ENST00000543356 PTPN23Q9H3S7 1636 aa14.06□□□□□ -0.16
GNE-206ENST00000543356 TCOF1Q13428 1488 aaKnown RBP14.05□□□□□ -0.16
GNE-206ENST00000543356 UHRF1BP1LA0JNW5 1464 aa14.04□□□□□ -0.16
GNE-206ENST00000543356 ARID3CA6NKF2 412 aa14.04□□□□□ -0.16
GNE-206ENST00000543356 ZEB1P37275 1124 aaPredicted RBP14.04□□□□□ -0.16
GNE-206ENST00000543356 MIA2Q96PC5 1412 aa14.04□□□□□ -0.16
GNE-206ENST00000543356 ITSN2Q9NZM3 1697 aa14.03□□□□□ -0.16
GNE-206ENST00000543356 KIF14Q15058 1648 aa14.02□□□□□ -0.16
GNE-206ENST00000543356 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.01□□□□□ -0.17
GNE-206ENST00000543356 OSCARQ8IYS5 282 aa14.01□□□□□ -0.17
GNE-206ENST00000543356 FAM50AQ14320 339 aaKnown RBP14□□□□□ -0.17
GNE-206ENST00000543356 CCER1Q8TC90 406 aaPredicted RBP13.98□□□□□ -0.17
GNE-206ENST00000543356 ZCCHC11Q5TAX3 1644 aaKnown RBP13.98□□□□□ -0.17
GNE-206ENST00000543356 ABCC10Q5T3U5 1492 aa13.97□□□□□ -0.17
GNE-206ENST00000543356 KDM5BQ9UGL1 1544 aa13.97□□□□□ -0.17
GNE-206ENST00000543356 PLEKHD1A6NEE1 506 aa13.97□□□□□ -0.17
GNE-206ENST00000543356 CDC42BPAQ5VT25 1732 aa13.95□□□□□ -0.18
GNE-206ENST00000543356 GPATCH8Q9UKJ3 1502 aaKnown RBP13.95□□□□□ -0.18
GNE-206ENST00000543356 ITGAEP38570 1179 aa13.95□□□□□ -0.18
GNE-206ENST00000543356 SETD5Q9C0A6 1442 aa13.93□□□□□ -0.18
GNE-206ENST00000543356 DNMT1P26358 1616 aaKnown RBP13.93□□□□□ -0.18
GNE-206ENST00000543356 MYT1Q01538 1121 aa13.92□□□□□ -0.18
GNE-206ENST00000543356 PTPRKQ15262 1439 aa13.92□□□□□ -0.18
GNE-206ENST00000543356 PREX2Q70Z35 1606 aa13.91□□□□□ -0.18
GNE-206ENST00000543356 CAMSAP2Q08AD1 1489 aa13.91□□□□□ -0.18
GNE-206ENST00000543356 RAB3GAP2Q9H2M9 1393 aa13.91□□□□□ -0.18
GNE-206ENST00000543356 AKNAQ7Z591 1439 aa13.91□□□□□ -0.18
GNE-206ENST00000543356 GCC2Q8IWJ2 1684 aa13.9□□□□□ -0.18
GNE-206ENST00000543356 HFM1A2PYH4 1435 aa13.9□□□□□ -0.18
GNE-206ENST00000543356 CROCC2H7BZ55 1655 aa13.89□□□□□ -0.19
GNE-206ENST00000543356 TTC37Q6PGP7 1564 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 122.5 ms