RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 EIF4G2P78344 907 aaKnown RBP eCLIP25.11■■□□□ 1.611e-6■■■■■ 38.8
HDAC4-215ENST00000543185 CFAP44Q96MT7 982 aa25.1■■□□□ 1.61
HDAC4-215ENST00000543185 STAG3Q9UJ98 1225 aa25.09■■□□□ 1.61
HDAC4-215ENST00000543185 ZNF777Q9ULD5 760 aaPredicted RBP25.09■■□□□ 1.61
HDAC4-215ENST00000543185 SCRIBQ14160 1630 aa25.08■■□□□ 1.6
HDAC4-215ENST00000543185 FTSJ3Q8IY81 847 aaKnown RBP25.08■■□□□ 1.6
HDAC4-215ENST00000543185 CDCA8Q53HL2 280 aa25.06■■□□□ 1.6
HDAC4-215ENST00000543185 MIER1Q8N108 512 aa25.05■■□□□ 1.6
HDAC4-215ENST00000543185 MS4A1P11836 297 aa25.05■■□□□ 1.6
HDAC4-215ENST00000543185 PPP4R2Q9NY27 417 aa25.04■■□□□ 1.6
HDAC4-215ENST00000543185 SALL2Q9Y467 1007 aaPredicted RBP25.02■■□□□ 1.6
HDAC4-215ENST00000543185 FBLN2P98095 1184 aa24.99■■□□□ 1.59
HDAC4-215ENST00000543185 EEA1Q15075 1411 aa24.99■■□□□ 1.59
HDAC4-215ENST00000543185 CFAP53Q96M91 514 aa24.98■■□□□ 1.59
HDAC4-215ENST00000543185 RSF1Q96T23 1441 aaPredicted RBP24.95■■□□□ 1.59
HDAC4-215ENST00000543185 MTUS2Q5JR59 1369 aa24.94■■□□□ 1.58
HDAC4-215ENST00000543185 HSP90AB1P08238 724 aaKnown RBP24.93■■□□□ 1.58
HDAC4-215ENST00000543185 USP35Q9P2H5 1018 aa24.93■■□□□ 1.58
HDAC4-215ENST00000543185 CLIP1P30622 1438 aa24.92■■□□□ 1.58
HDAC4-215ENST00000543185 HSCBQ8IWL3 235 aa24.92■■□□□ 1.58
HDAC4-215ENST00000543185 IRX6P78412 446 aaPredicted RBP24.91■■□□□ 1.58
HDAC4-215ENST00000543185 ARID4BQ4LE39 1312 aaPredicted RBP24.85■■□□□ 1.57
HDAC4-215ENST00000543185 KNSTRNQ9Y448 316 aa24.85■■□□□ 1.57
HDAC4-215ENST00000543185 P3H3Q8IVL6 736 aa24.85■■□□□ 1.57
HDAC4-215ENST00000543185 GOLGA3Q08378 1498 aa24.85■■□□□ 1.57
HDAC4-215ENST00000543185 KIAA2012Q0VF49 1180 aa24.84■■□□□ 1.57
HDAC4-215ENST00000543185 GOLGA6L4A6NEF3 574 aa24.83■■□□□ 1.57
HDAC4-215ENST00000543185 LAS1LQ9Y4W2 734 aaKnown RBP24.82■■□□□ 1.56
HDAC4-215ENST00000543185 DEKP35659 375 aaKnown RBP24.82■■□□□ 1.56
HDAC4-215ENST00000543185 MCCP23508 829 aa24.82■■□□□ 1.56
HDAC4-215ENST00000543185 CHGAP10645 457 aaKnown RBP24.81■■□□□ 1.56
HDAC4-215ENST00000543185 TSPY4P0CV99 314 aa24.81■■□□□ 1.56
HDAC4-215ENST00000543185 TSPY10P0CW01 314 aa24.81■■□□□ 1.56
HDAC4-215ENST00000543185 RTN4Q9NQC3 1192 aaKnown RBP24.81■■□□□ 1.56
HDAC4-215ENST00000543185 SYAP1Q96A49 352 aaPredicted RBP24.8■■□□□ 1.56
HDAC4-215ENST00000543185 ABCC9O60706 1549 aa24.79■■□□□ 1.56
HDAC4-215ENST00000543185 PNNQ9H307 717 aaKnown RBP24.78■■□□□ 1.56
HDAC4-215ENST00000543185 GBP4Q96PP9 640 aa24.78■■□□□ 1.56
HDAC4-215ENST00000543185 TNNT3P45378 269 aaPredicted RBP24.78■■□□□ 1.56
HDAC4-215ENST00000543185 SUPT16HQ9Y5B9 1047 aaKnown RBP24.78■■□□□ 1.56
HDAC4-215ENST00000543185 PLCB2Q00722 1185 aa24.74■■□□□ 1.55
HDAC4-215ENST00000543185 DRC7Q8IY82 874 aa24.74■■□□□ 1.55
HDAC4-215ENST00000543185 FGD1P98174 961 aa24.71■■□□□ 1.55
HDAC4-215ENST00000543185 GOLGA6L1Q8N7Z2 621 aa24.7■■□□□ 1.55
HDAC4-215ENST00000543185 ZCCHC6Q5VYS8 1495 aaKnown RBP24.7■■□□□ 1.54
HDAC4-215ENST00000543185 ARID3CA6NKF2 412 aa24.69■■□□□ 1.54
HDAC4-215ENST00000543185 MAPK8IP3Q9UPT6 1336 aa24.68■■□□□ 1.54
HDAC4-215ENST00000543185 RSPH6AQ9H0K4 717 aa24.66■■□□□ 1.54
HDAC4-215ENST00000543185 HAP1P54257 671 aaPredicted RBP24.65■■□□□ 1.54
HDAC4-215ENST00000543185 HTATSF1O43719 755 aaKnown RBP24.65■■□□□ 1.54
HDAC4-215ENST00000543185 CEP162Q5TB80 1403 aa24.64■■□□□ 1.53
HDAC4-215ENST00000543185 KDM2AQ9Y2K7 1162 aa24.64■■□□□ 1.53
HDAC4-215ENST00000543185 NUDCQ9Y266 331 aa24.63■■□□□ 1.53
HDAC4-215ENST00000543185 PHF14O94880 888 aa24.62■■□□□ 1.53
HDAC4-215ENST00000543185 KCNJ4P48050 445 aa24.62■■□□□ 1.53
HDAC4-215ENST00000543185 RGS3P49796 1198 aa24.61■■□□□ 1.53
HDAC4-215ENST00000543185 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.6■■□□□ 1.539e-7■■□□□ 12.4
HDAC4-215ENST00000543185 NPM1P06748 294 aaKnown RBP eCLIP24.6■■□□□ 1.53
HDAC4-215ENST00000543185 SETQ01105 290 aaPredicted RBP24.59■■□□□ 1.53
HDAC4-215ENST00000543185 NOC3LQ8WTT2 800 aaKnown RBP24.59■■□□□ 1.53
HDAC4-215ENST00000543185 CCDC34Q96HJ3 373 aa24.57■■□□□ 1.52
HDAC4-215ENST00000543185 CCER2I3L3R5 266 aa24.57■■□□□ 1.52
HDAC4-215ENST00000543185 CEP164Q9UPV0 1460 aa24.56■■□□□ 1.52
HDAC4-215ENST00000543185 CHIC2Q9UKJ5 165 aa24.56■■□□□ 1.52
HDAC4-215ENST00000543185 TPM4P67936 248 aa24.56■■□□□ 1.52
HDAC4-215ENST00000543185 PABPN1Q86U42 306 aaKnown RBP eCLIP24.55■■□□□ 1.52
HDAC4-215ENST00000543185 CSPP1Q1MSJ5 1256 aa24.54■■□□□ 1.52
HDAC4-215ENST00000543185 OS9Q13438 667 aaPredicted RBP24.51■■□□□ 1.51
HDAC4-215ENST00000543185 RBM19Q9Y4C8 960 aaKnown RBP24.5■■□□□ 1.51
HDAC4-215ENST00000543185 TIMELESSQ9UNS1 1208 aa24.5■■□□□ 1.51
HDAC4-215ENST00000543185 HSP90AA2PQ14568 343 aaPredicted RBP24.5■■□□□ 1.51
HDAC4-215ENST00000543185 GOLGA6L3A6NEY3 463 aa24.49■■□□□ 1.51
HDAC4-215ENST00000543185 TCERG1O14776 1098 aaKnown RBP24.47■■□□□ 1.51
HDAC4-215ENST00000543185 GNL2Q13823 731 aaKnown RBP24.46■■□□□ 1.51
HDAC4-215ENST00000543185 TPRNQ4KMQ1 711 aa24.46■■□□□ 1.51
HDAC4-215ENST00000543185 FHAD1B1AJZ9 1412 aa24.44■■□□□ 1.5
HDAC4-215ENST00000543185 PPP1R15AO75807 674 aaPredicted RBP24.44■■□□□ 1.5
HDAC4-215ENST00000543185 CARD11Q9BXL7 1154 aa24.43■■□□□ 1.5
HDAC4-215ENST00000543185 KIAA1211Q6ZU35 1233 aa24.43■■□□□ 1.5
HDAC4-215ENST00000543185 FRAT1Q92837 279 aaPredicted RBP24.41■■□□□ 1.5
HDAC4-215ENST00000543185 GOLGA2Q08379 1002 aa24.41■■□□□ 1.5
HDAC4-215ENST00000543185 IPO8O15397 1037 aaKnown RBP24.4■■□□□ 1.5
HDAC4-215ENST00000543185 B4GALNT3Q6L9W6 998 aa24.38■■□□□ 1.49
HDAC4-215ENST00000543185 DDX11L8A8MPP1 907 aa24.38■■□□□ 1.49
HDAC4-215ENST00000543185 AMER1Q5JTC6 1135 aaPredicted RBP24.37■■□□□ 1.49
HDAC4-215ENST00000543185 CALD1Q05682 793 aaKnown RBP24.36■■□□□ 1.49
HDAC4-215ENST00000543185 IPO9Q96P70 1041 aaKnown RBP24.36■■□□□ 1.49
HDAC4-215ENST00000543185 NAP1L2Q9ULW6 460 aaPredicted RBP24.35■■□□□ 1.49
HDAC4-215ENST00000543185 CHMP4AQ9BY43 222 aa24.34■■□□□ 1.49
HDAC4-215ENST00000543185 HIRIP3Q9BW71 556 aaPredicted RBP24.34■■□□□ 1.49
HDAC4-215ENST00000543185 KTN1Q86UP2 1357 aaKnown RBP24.33■■□□□ 1.48
HDAC4-215ENST00000543185 GPS2Q13227 327 aa24.33■■□□□ 1.48
HDAC4-215ENST00000543185 A0A0U1RQG5 324 aaPredicted RBP24.32■■□□□ 1.48
HDAC4-215ENST00000543185 CALRP27797 417 aaKnown RBP24.32■■□□□ 1.48
HDAC4-215ENST00000543185 TNIKQ9UKE5 1360 aa24.31■■□□□ 1.48
HDAC4-215ENST00000543185 C14orf37Q86TY3 774 aa24.31■■□□□ 1.48
HDAC4-215ENST00000543185 RB1CC1Q8TDY2 1594 aa24.31■■□□□ 1.48
HDAC4-215ENST00000543185 PHLDB1Q86UU1 1377 aa24.31■■□□□ 1.48
HDAC4-215ENST00000543185 RRP7BPQ9NSQ0 103 aa24.29■■□□□ 1.48
HDAC4-215ENST00000543185 RWDD1Q9H446 243 aaPredicted RBP24.29■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms