RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 ADAMTS12P58397 1594 aa20.89■□□□□ 0.94
VPS33A-207ENST00000542790 GRIN2AQ12879 1464 aa20.88■□□□□ 0.93
VPS33A-207ENST00000542790 CARMIL1Q5VZK9 1371 aa20.83■□□□□ 0.92
VPS33A-207ENST00000542790 RUSC2Q8N2Y8 1516 aa20.8■□□□□ 0.92
VPS33A-207ENST00000542790 NCBP3Q53F19 620 aaKnown RBP20.8■□□□□ 0.92
VPS33A-207ENST00000542790 NUP160Q12769 1436 aa20.79■□□□□ 0.92
VPS33A-207ENST00000542790 CLASP1Q7Z460 1538 aa20.78■□□□□ 0.92
VPS33A-207ENST00000542790 CUL7Q14999 1698 aa20.77■□□□□ 0.91
VPS33A-207ENST00000542790 HOXD11P31277 338 aaPredicted RBP20.75■□□□□ 0.91
VPS33A-207ENST00000542790 ARHGEF11O15085 1522 aa20.73■□□□□ 0.91
VPS33A-207ENST00000542790 CEP170Q5SW79 1584 aa20.72■□□□□ 0.91
VPS33A-207ENST00000542790 KCNA4P22459 653 aa20.71■□□□□ 0.91
VPS33A-207ENST00000542790 CSRNP3Q8WYN3 585 aa20.7■□□□□ 0.9
VPS33A-207ENST00000542790 RNF216Q9NWF9 866 aaPredicted RBP20.7■□□□□ 0.9
VPS33A-207ENST00000542790 EEA1Q15075 1411 aa20.69■□□□□ 0.9
VPS33A-207ENST00000542790 RAPGEF2Q9Y4G8 1499 aa20.69■□□□□ 0.9
VPS33A-207ENST00000542790 JPH4Q96JJ6 628 aa20.66■□□□□ 0.9
VPS33A-207ENST00000542790 RIMBP3CA6NJZ7 1639 aa20.66■□□□□ 0.9
VPS33A-207ENST00000542790 RIMBP3BA6NNM3 1639 aa20.66■□□□□ 0.9
VPS33A-207ENST00000542790 RIMBP3Q9UFD9 1639 aa20.66■□□□□ 0.9
VPS33A-207ENST00000542790 KIAA0586Q9BVV6 1533 aa20.64■□□□□ 0.9
VPS33A-207ENST00000542790 NPM3O75607 178 aaKnown RBP20.63■□□□□ 0.89
VPS33A-207ENST00000542790 CYB5RLQ6IPT4 315 aa20.63■□□□□ 0.89
VPS33A-207ENST00000542790 PRXQ9BXM0 1461 aa20.62■□□□□ 0.89
VPS33A-207ENST00000542790 FAM9AQ8IZU1 332 aaPredicted RBP20.62■□□□□ 0.89
VPS33A-207ENST00000542790 PRG4Q92954 1404 aaPredicted RBP20.57■□□□□ 0.88
VPS33A-207ENST00000542790 ARAP1Q96P48 1450 aa20.56■□□□□ 0.88
VPS33A-207ENST00000542790 SHROOM2Q13796 1616 aa20.54■□□□□ 0.88
VPS33A-207ENST00000542790 ERCC6L2Q5T890 1561 aa20.48■□□□□ 0.87
VPS33A-207ENST00000542790 IQGAP2Q13576 1575 aa20.46■□□□□ 0.87
VPS33A-207ENST00000542790 CARMIL2Q6F5E8 1435 aa20.44■□□□□ 0.86
VPS33A-207ENST00000542790 DCAF8L1A6NGE4 600 aa20.39■□□□□ 0.85
VPS33A-207ENST00000542790 UGGT2Q9NYU1 1516 aa20.38■□□□□ 0.85
VPS33A-207ENST00000542790 PTPRGP23470 1445 aa20.36■□□□□ 0.85
VPS33A-207ENST00000542790 TNIKQ9UKE5 1360 aa20.36■□□□□ 0.85
VPS33A-207ENST00000542790 KIF21BO75037 1637 aa20.36■□□□□ 0.85
VPS33A-207ENST00000542790 DISP1Q96F81 1524 aa20.35■□□□□ 0.85
VPS33A-207ENST00000542790 UBTFP17480 764 aaKnown RBP20.34■□□□□ 0.85
VPS33A-207ENST00000542790 EHMT2Q96KQ7 1210 aa20.33■□□□□ 0.85
VPS33A-207ENST00000542790 TTBK1Q5TCY1 1321 aaPredicted RBP20.32■□□□□ 0.84
VPS33A-207ENST00000542790 GOLGA3Q08378 1498 aa20.32■□□□□ 0.84
VPS33A-207ENST00000542790 CTTNBP2Q8WZ74 1663 aa20.31■□□□□ 0.84
VPS33A-207ENST00000542790 NPM1P06748 294 aaKnown RBP eCLIP20.27■□□□□ 0.84
VPS33A-207ENST00000542790 KIAA0556O60303 1618 aa20.25■□□□□ 0.83
VPS33A-207ENST00000542790 RANGAP1P46060 587 aaPredicted RBP20.25■□□□□ 0.83
VPS33A-207ENST00000542790 P3H3Q8IVL6 736 aa20.23■□□□□ 0.83
VPS33A-207ENST00000542790 UACAQ9BZF9 1416 aa20.2■□□□□ 0.82
VPS33A-207ENST00000542790 TRHP20396 242 aaPredicted RBP20.2■□□□□ 0.82
VPS33A-207ENST00000542790 UHRF1BP1LA0JNW5 1464 aa20.17■□□□□ 0.82
VPS33A-207ENST00000542790 ADCY10Q96PN6 1610 aa20.14■□□□□ 0.81
VPS33A-207ENST00000542790 SAMD9Q5K651 1589 aa20.14■□□□□ 0.81
VPS33A-207ENST00000542790 ABCC2Q92887 1545 aa20.12■□□□□ 0.81
VPS33A-207ENST00000542790 EFCAB5A4FU69 1503 aa20.12■□□□□ 0.81
VPS33A-207ENST00000542790 PLB1Q6P1J6 1458 aa20.11■□□□□ 0.81
VPS33A-207ENST00000542790 FHOD3Q2V2M9 1422 aa20.09■□□□□ 0.81
VPS33A-207ENST00000542790 MAPKBP1O60336 1514 aa20.06■□□□□ 0.8
VPS33A-207ENST00000542790 KDM5BQ9UGL1 1544 aa20.06■□□□□ 0.8
VPS33A-207ENST00000542790 ABCA8O94911 1581 aa20.04■□□□□ 0.8
VPS33A-207ENST00000542790 ARHGAP35Q9NRY4 1499 aa20.04■□□□□ 0.8
VPS33A-207ENST00000542790 LOC105371045A0A1W2PR82 267 aa20■□□□□ 0.79
VPS33A-207ENST00000542790 FAM69CQ0P6D2 419 aa20■□□□□ 0.79
VPS33A-207ENST00000542790 ASXL2Q76L83 1435 aa20■□□□□ 0.79
VPS33A-207ENST00000542790 FMN1Q68DA7 1419 aa19.99■□□□□ 0.79
VPS33A-207ENST00000542790 ABCC10Q5T3U5 1492 aa19.99■□□□□ 0.79
VPS33A-207ENST00000542790 CLIP1P30622 1438 aa19.98■□□□□ 0.79
VPS33A-207ENST00000542790 ARID3CA6NKF2 412 aa19.96■□□□□ 0.79
VPS33A-207ENST00000542790 ATP10BO94823 1461 aa19.94■□□□□ 0.78
VPS33A-207ENST00000542790 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.94■□□□□ 0.78
VPS33A-207ENST00000542790 HNRNPUL2Q1KMD3 747 aaKnown RBP19.94■□□□□ 0.78
VPS33A-207ENST00000542790 RAPGEF6Q8TEU7 1601 aa19.93■□□□□ 0.78
VPS33A-207ENST00000542790 ZCCHC11Q5TAX3 1644 aaKnown RBP19.92■□□□□ 0.78
VPS33A-207ENST00000542790 NUP153P49790 1475 aaKnown RBP19.92■□□□□ 0.78
VPS33A-207ENST00000542790 ATP1B4Q9UN42 357 aaPredicted RBP19.91■□□□□ 0.78
VPS33A-207ENST00000542790 WDR7Q9Y4E6 1490 aa19.9■□□□□ 0.78
VPS33A-207ENST00000542790 DIP2BQ9P265 1576 aa19.88■□□□□ 0.77
VPS33A-207ENST00000542790 CEP162Q5TB80 1403 aa19.88■□□□□ 0.77
VPS33A-207ENST00000542790 KCNH8Q96L42 1107 aa19.88■□□□□ 0.77
VPS33A-207ENST00000542790 EPRSP07814 1512 aaKnown RBP19.86■□□□□ 0.77
VPS33A-207ENST00000542790 PLEKHD1A6NEE1 506 aa19.86■□□□□ 0.77
VPS33A-207ENST00000542790 GLI2P10070 1586 aa19.83■□□□□ 0.76
VPS33A-207ENST00000542790 CDK11AQ9UQ88 783 aaPredicted RBP19.82■□□□□ 0.76
VPS33A-207ENST00000542790 CASKIN1Q8WXD9 1431 aa19.82■□□□□ 0.76
VPS33A-207ENST00000542790 KIF13AQ9H1H9 1805 aa19.79■□□□□ 0.76
VPS33A-207ENST00000542790 RNF39Q9H2S5 420 aa19.79■□□□□ 0.76
VPS33A-207ENST00000542790 HECW1Q76N89 1606 aa19.79■□□□□ 0.76
VPS33A-207ENST00000542790 CDK13Q14004 1512 aaKnown RBP19.75■□□□□ 0.75
VPS33A-207ENST00000542790 FYCO1Q9BQS8 1478 aa19.74■□□□□ 0.75
VPS33A-207ENST00000542790 CD109Q6YHK3 1445 aa19.74■□□□□ 0.75
VPS33A-207ENST00000542790 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.72■□□□□ 0.75
VPS33A-207ENST00000542790 CCDC18Q5T9S5 1454 aa19.72■□□□□ 0.75
VPS33A-207ENST00000542790 PCF11O94913 1555 aaKnown RBP19.71■□□□□ 0.75
VPS33A-207ENST00000542790 TEX14Q8IWB6 1497 aa19.69■□□□□ 0.74
VPS33A-207ENST00000542790 MAP3K4Q9Y6R4 1608 aa19.68■□□□□ 0.74
VPS33A-207ENST00000542790 MAGI3Q5TCQ9 1506 aa19.67■□□□□ 0.74
VPS33A-207ENST00000542790 TROQ12816 1431 aaPredicted RBP19.66■□□□□ 0.74
VPS33A-207ENST00000542790 VPS8Q8N3P4 1428 aa19.65■□□□□ 0.74
VPS33A-207ENST00000542790 CFAP43Q8NDM7 1665 aa19.63■□□□□ 0.73
VPS33A-207ENST00000542790 ABCA9Q8IUA7 1624 aa19.63■□□□□ 0.73
VPS33A-207ENST00000542790 SLC4A2P04920 1241 aa19.61■□□□□ 0.73
VPS33A-207ENST00000542790 TSPOAP1O95153 1857 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms