RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 ARAP1Q96P48 1450 aa16.51■□□□□ 0.23
YBX3-212ENST00000542002 JPH4Q96JJ6 628 aa16.49■□□□□ 0.23
YBX3-212ENST00000542002 ERCC6L2Q5T890 1561 aa16.47■□□□□ 0.23
YBX3-212ENST00000542002 CUL7Q14999 1698 aa16.45■□□□□ 0.22
YBX3-212ENST00000542002 KIAA0586Q9BVV6 1533 aa16.41■□□□□ 0.22
YBX3-212ENST00000542002 PRG4Q92954 1404 aaPredicted RBP16.41■□□□□ 0.22
YBX3-212ENST00000542002 SHROOM2Q13796 1616 aa16.41■□□□□ 0.22
YBX3-212ENST00000542002 FOXD1Q16676 465 aa16.4■□□□□ 0.22
YBX3-212ENST00000542002 RAPGEF2Q9Y4G8 1499 aa16.4■□□□□ 0.22
YBX3-212ENST00000542002 CSRNP3Q8WYN3 585 aa16.39■□□□□ 0.21
YBX3-212ENST00000542002 PRXQ9BXM0 1461 aa16.37■□□□□ 0.21
YBX3-212ENST00000542002 FAM9AQ8IZU1 332 aaPredicted RBP16.37■□□□□ 0.21
YBX3-212ENST00000542002 EEA1Q15075 1411 aa16.27■□□□□ 0.19
YBX3-212ENST00000542002 IQGAP2Q13576 1575 aa16.25■□□□□ 0.19
YBX3-212ENST00000542002 TTBK1Q5TCY1 1321 aaPredicted RBP16.24■□□□□ 0.19
YBX3-212ENST00000542002 DISP1Q96F81 1524 aa16.24■□□□□ 0.19
YBX3-212ENST00000542002 PTPRGP23470 1445 aa16.21■□□□□ 0.19
YBX3-212ENST00000542002 TRHP20396 242 aaPredicted RBP16.21■□□□□ 0.19
YBX3-212ENST00000542002 UGGT2Q9NYU1 1516 aa16.2■□□□□ 0.18
YBX3-212ENST00000542002 TNIKQ9UKE5 1360 aa16.2■□□□□ 0.18
YBX3-212ENST00000542002 CARMIL2Q6F5E8 1435 aa16.19■□□□□ 0.18
YBX3-212ENST00000542002 EHMT2Q96KQ7 1210 aa16.19■□□□□ 0.18
YBX3-212ENST00000542002 P3H3Q8IVL6 736 aa16.14■□□□□ 0.17
YBX3-212ENST00000542002 RANGAP1P46060 587 aaPredicted RBP16.12■□□□□ 0.17
YBX3-212ENST00000542002 ADCY10Q96PN6 1610 aa16.12■□□□□ 0.17
YBX3-212ENST00000542002 KIAA0556O60303 1618 aa16.11■□□□□ 0.17
YBX3-212ENST00000542002 CTTNBP2Q8WZ74 1663 aa16.11■□□□□ 0.17
YBX3-212ENST00000542002 NPM1P06748 294 aaKnown RBP eCLIP16.1■□□□□ 0.17
YBX3-212ENST00000542002 KIF21BO75037 1637 aa16.08■□□□□ 0.17
YBX3-212ENST00000542002 UBTFP17480 764 aaKnown RBP16.08■□□□□ 0.16
YBX3-212ENST00000542002 UACAQ9BZF9 1416 aa16.08■□□□□ 0.16
YBX3-212ENST00000542002 GOLGA3Q08378 1498 aa16.07■□□□□ 0.16
YBX3-212ENST00000542002 UHRF1BP1LA0JNW5 1464 aa16.04■□□□□ 0.16
YBX3-212ENST00000542002 PLB1Q6P1J6 1458 aa16.04■□□□□ 0.16
YBX3-212ENST00000542002 ABCC2Q92887 1545 aa16.03■□□□□ 0.16
YBX3-212ENST00000542002 FAM69CQ0P6D2 419 aa16.01■□□□□ 0.15
YBX3-212ENST00000542002 SAMD9Q5K651 1589 aa16■□□□□ 0.15
YBX3-212ENST00000542002 MAPKBP1O60336 1514 aa15.99■□□□□ 0.15
YBX3-212ENST00000542002 KDM5BQ9UGL1 1544 aa15.98■□□□□ 0.15
YBX3-212ENST00000542002 ABCC10Q5T3U5 1492 aa15.97■□□□□ 0.15
YBX3-212ENST00000542002 ABCA8O94911 1581 aa15.97■□□□□ 0.15
YBX3-212ENST00000542002 FHOD3Q2V2M9 1422 aa15.97■□□□□ 0.15
YBX3-212ENST00000542002 ASXL2Q76L83 1435 aa15.96■□□□□ 0.15
YBX3-212ENST00000542002 ARID3CA6NKF2 412 aa15.96■□□□□ 0.15
YBX3-212ENST00000542002 ATP10BO94823 1461 aa15.91■□□□□ 0.14
YBX3-212ENST00000542002 ARHGAP35Q9NRY4 1499 aa15.91■□□□□ 0.14
YBX3-212ENST00000542002 KIF13AQ9H1H9 1805 aa15.9■□□□□ 0.14
YBX3-212ENST00000542002 DIP2BQ9P265 1576 aa15.9■□□□□ 0.14
YBX3-212ENST00000542002 ZCCHC11Q5TAX3 1644 aaKnown RBP15.9■□□□□ 0.14
YBX3-212ENST00000542002 LOC105371045A0A1W2PR82 267 aa15.89■□□□□ 0.13
YBX3-212ENST00000542002 EFCAB5A4FU69 1503 aa15.88■□□□□ 0.13
YBX3-212ENST00000542002 KCNH8Q96L42 1107 aa15.87■□□□□ 0.13
YBX3-212ENST00000542002 EPRSP07814 1512 aaKnown RBP15.86■□□□□ 0.13
YBX3-212ENST00000542002 NUP153P49790 1475 aaKnown RBP15.85■□□□□ 0.13
YBX3-212ENST00000542002 WDR7Q9Y4E6 1490 aa15.84■□□□□ 0.13
YBX3-212ENST00000542002 RAPGEF6Q8TEU7 1601 aa15.83■□□□□ 0.13
YBX3-212ENST00000542002 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.82■□□□□ 0.12
YBX3-212ENST00000542002 HNRNPUL2Q1KMD3 747 aaKnown RBP15.82■□□□□ 0.12
YBX3-212ENST00000542002 GLI2P10070 1586 aa15.81■□□□□ 0.12
YBX3-212ENST00000542002 ATP1B4Q9UN42 357 aaPredicted RBP15.79■□□□□ 0.12
YBX3-212ENST00000542002 CLIP1P30622 1438 aa15.77■□□□□ 0.12
YBX3-212ENST00000542002 FMN1Q68DA7 1419 aa15.77■□□□□ 0.12
YBX3-212ENST00000542002 POTEDQ86YR6 584 aa15.77■□□□□ 0.12
YBX3-212ENST00000542002 PLEKHD1A6NEE1 506 aa15.75■□□□□ 0.11
YBX3-212ENST00000542002 TSPOAP1O95153 1857 aa15.74■□□□□ 0.11
YBX3-212ENST00000542002 CD109Q6YHK3 1445 aa15.73■□□□□ 0.11
YBX3-212ENST00000542002 CDK13Q14004 1512 aaKnown RBP15.73■□□□□ 0.11
YBX3-212ENST00000542002 PPRC1Q5VV67 1664 aaKnown RBP15.73■□□□□ 0.11
YBX3-212ENST00000542002 MAP3K4Q9Y6R4 1608 aa15.72■□□□□ 0.11
YBX3-212ENST00000542002 COL17A1Q9UMD9 1497 aaPredicted RBP15.71■□□□□ 0.11
YBX3-212ENST00000542002 CEP162Q5TB80 1403 aa15.7■□□□□ 0.1
YBX3-212ENST00000542002 CASKIN1Q8WXD9 1431 aa15.68■□□□□ 0.1
YBX3-212ENST00000542002 MAGI3Q5TCQ9 1506 aa15.68■□□□□ 0.1
YBX3-212ENST00000542002 HECW1Q76N89 1606 aa15.65■□□□□ 0.1
YBX3-212ENST00000542002 TEX14Q8IWB6 1497 aa15.64■□□□□ 0.09
YBX3-212ENST00000542002 PCF11O94913 1555 aaKnown RBP15.63■□□□□ 0.09
YBX3-212ENST00000542002 CDK11AQ9UQ88 783 aaPredicted RBP15.63■□□□□ 0.09
YBX3-212ENST00000542002 KDM6BO15054 1643 aa15.63■□□□□ 0.09
YBX3-212ENST00000542002 ABCA9Q8IUA7 1624 aa15.63■□□□□ 0.09
YBX3-212ENST00000542002 CFAP43Q8NDM7 1665 aa15.63■□□□□ 0.09
YBX3-212ENST00000542002 LRRIQ1Q96JM4 1722 aa15.62■□□□□ 0.09
YBX3-212ENST00000542002 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.62■□□□□ 0.09
YBX3-212ENST00000542002 FYCO1Q9BQS8 1478 aa15.59■□□□□ 0.09
YBX3-212ENST00000542002 TROQ12816 1431 aaPredicted RBP15.59■□□□□ 0.09
YBX3-212ENST00000542002 RAPGEF3O95398 923 aa15.57■□□□□ 0.08
YBX3-212ENST00000542002 TTC37Q6PGP7 1564 aa15.56■□□□□ 0.08
YBX3-212ENST00000542002 CCDC18Q5T9S5 1454 aa15.55■□□□□ 0.08
YBX3-212ENST00000542002 PLCH2O75038 1416 aa15.55■□□□□ 0.08
YBX3-212ENST00000542002 KIF14Q15058 1648 aa15.54■□□□□ 0.08
YBX3-212ENST00000542002 ARAP3Q8WWN8 1544 aa15.54■□□□□ 0.08
YBX3-212ENST00000542002 NEO1Q92859 1461 aa15.53■□□□□ 0.08
YBX3-212ENST00000542002 PHLDB1Q86UU1 1377 aa15.53■□□□□ 0.08
YBX3-212ENST00000542002 AKNAQ7Z591 1439 aa15.52■□□□□ 0.08
YBX3-212ENST00000542002 FANCAO15360 1455 aa15.52■□□□□ 0.07
YBX3-212ENST00000542002 MSH5O43196 834 aa15.51■□□□□ 0.07
YBX3-212ENST00000542002 VPS8Q8N3P4 1428 aa15.5■□□□□ 0.07
YBX3-212ENST00000542002 EFCAB2Q5VUJ9 269 aa15.49■□□□□ 0.07
YBX3-212ENST00000542002 KDM4FA0A1W2PPD8 638 aa15.48■□□□□ 0.07
YBX3-212ENST00000542002 SCAPERQ9BY12 1400 aa15.45■□□□□ 0.06
YBX3-212ENST00000542002 KANK4Q5T7N3 995 aaPredicted RBP15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms