RNA–Protein interactions for RNA: ENST00000541576.5

THBS3-210, Transcript of thrombospondin 3, humanhuman

TSL 1 (best) BASIC

Gene THBS3, Length 3,200 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
THBS3-210ENST00000541576 VPS8Q8N3P4 1428 aa13.61□□□□□ -0.23
THBS3-210ENST00000541576 GRIN2AQ12879 1464 aa13.61□□□□□ -0.23
THBS3-210ENST00000541576 ARAP1Q96P48 1450 aa13.6□□□□□ -0.23
THBS3-210ENST00000541576 CHMP7Q8WUX9 453 aaPredicted RBP13.6□□□□□ -0.23
THBS3-210ENST00000541576 PPARGC1BQ86YN6 1023 aaKnown RBP13.59□□□□□ -0.23
THBS3-210ENST00000541576 FBLN2P98095 1184 aa13.58□□□□□ -0.24
THBS3-210ENST00000541576 EFCAB5A4FU69 1503 aa13.56□□□□□ -0.24
THBS3-210ENST00000541576 IQGAP2Q13576 1575 aa13.55□□□□□ -0.24
THBS3-210ENST00000541576 PCGF6Q9BYE7 350 aa13.55□□□□□ -0.24
THBS3-210ENST00000541576 KIAA0586Q9BVV6 1533 aa13.53□□□□□ -0.24
THBS3-210ENST00000541576 P3H3Q8IVL6 736 aa13.53□□□□□ -0.24
THBS3-210ENST00000541576 FHOD3Q2V2M9 1422 aa13.51□□□□□ -0.25
THBS3-210ENST00000541576 SAMD9Q5K651 1589 aa13.51□□□□□ -0.25
THBS3-210ENST00000541576 CEP170Q5SW79 1584 aa13.51□□□□□ -0.25
THBS3-210ENST00000541576 TRIM26Q12899 539 aaPredicted RBP13.51□□□□□ -0.25
THBS3-210ENST00000541576 NUP160Q12769 1436 aa13.51□□□□□ -0.25
THBS3-210ENST00000541576 APLP2Q06481 763 aa13.5□□□□□ -0.25
THBS3-210ENST00000541576 HRCP23327 699 aa13.48□□□□□ -0.25
THBS3-210ENST00000541576 UGGT2Q9NYU1 1516 aa13.48□□□□□ -0.25
THBS3-210ENST00000541576 CHD1O14646 1710 aa13.47□□□□□ -0.25
THBS3-210ENST00000541576 TTBK1Q5TCY1 1321 aaPredicted RBP13.47□□□□□ -0.25
THBS3-210ENST00000541576 FMN1Q68DA7 1419 aa13.45□□□□□ -0.26
THBS3-210ENST00000541576 PCF11O94913 1555 aaKnown RBP13.42□□□□□ -0.26
THBS3-210ENST00000541576 DISP1Q96F81 1524 aa13.42□□□□□ -0.26
THBS3-210ENST00000541576 JPH4Q96JJ6 628 aa13.41□□□□□ -0.26
THBS3-210ENST00000541576 CASKIN1Q8WXD9 1431 aa13.41□□□□□ -0.26
THBS3-210ENST00000541576 KIAA0556O60303 1618 aa13.41□□□□□ -0.26
THBS3-210ENST00000541576 FYCO1Q9BQS8 1478 aa13.4□□□□□ -0.26
THBS3-210ENST00000541576 ATP1B4Q9UN42 357 aaPredicted RBP13.39□□□□□ -0.27
THBS3-210ENST00000541576 CARMIL2Q6F5E8 1435 aa13.38□□□□□ -0.27
THBS3-210ENST00000541576 MAP3K1Q13233 1512 aa13.37□□□□□ -0.27
THBS3-210ENST00000541576 KANK4Q5T7N3 995 aaPredicted RBP13.37□□□□□ -0.27
THBS3-210ENST00000541576 TIAM1Q13009 1591 aa13.36□□□□□ -0.27
THBS3-210ENST00000541576 CFAP43Q8NDM7 1665 aa13.33□□□□□ -0.28
THBS3-210ENST00000541576 PRG4Q92954 1404 aaPredicted RBP13.33□□□□□ -0.28
THBS3-210ENST00000541576 SHROOM2Q13796 1616 aa13.32□□□□□ -0.28
THBS3-210ENST00000541576 CLASP1Q7Z460 1538 aa13.31□□□□□ -0.28
THBS3-210ENST00000541576 HECW1Q76N89 1606 aa13.31□□□□□ -0.28
THBS3-210ENST00000541576 LRRC9Q6ZRR7 1453 aa13.3□□□□□ -0.28
THBS3-210ENST00000541576 LRRIQ1Q96JM4 1722 aa13.28□□□□□ -0.28
THBS3-210ENST00000541576 CCDC18Q5T9S5 1454 aa13.28□□□□□ -0.28
THBS3-210ENST00000541576 RAPGEF6Q8TEU7 1601 aa13.27□□□□□ -0.29
THBS3-210ENST00000541576 EPRSP07814 1512 aaKnown RBP13.26□□□□□ -0.29
THBS3-210ENST00000541576 PLB1Q6P1J6 1458 aa13.25□□□□□ -0.29
THBS3-210ENST00000541576 PTPRGP23470 1445 aa13.25□□□□□ -0.29
THBS3-210ENST00000541576 NUP153P49790 1475 aaKnown RBP13.24□□□□□ -0.29
THBS3-210ENST00000541576 MTUS2Q5JR59 1369 aa13.24□□□□□ -0.29
THBS3-210ENST00000541576 OSCARQ8IYS5 282 aa13.24□□□□□ -0.29
THBS3-210ENST00000541576 ARID3CA6NKF2 412 aa13.23□□□□□ -0.29
THBS3-210ENST00000541576 ERCC6L2Q5T890 1561 aa13.23□□□□□ -0.29
THBS3-210ENST00000541576 CDK13Q14004 1512 aaKnown RBP13.23□□□□□ -0.29
THBS3-210ENST00000541576 ABCA8O94911 1581 aa13.21□□□□□ -0.29
THBS3-210ENST00000541576 EHBP1L1Q8N3D4 1523 aa13.21□□□□□ -0.3
THBS3-210ENST00000541576 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.19□□□□□ -0.3
THBS3-210ENST00000541576 HNRNPUL2Q1KMD3 747 aaKnown RBP13.19□□□□□ -0.3
THBS3-210ENST00000541576 RRBP1Q9P2E9 1410 aaKnown RBP13.19□□□□□ -0.3
THBS3-210ENST00000541576 MAGI3Q5TCQ9 1506 aa13.19□□□□□ -0.3
THBS3-210ENST00000541576 PHLDB1Q86UU1 1377 aa13.18□□□□□ -0.3
THBS3-210ENST00000541576 CDK11AQ9UQ88 783 aaPredicted RBP13.17□□□□□ -0.3
THBS3-210ENST00000541576 UACAQ9BZF9 1416 aa13.17□□□□□ -0.3
THBS3-210ENST00000541576 SUPT6HQ7KZ85 1726 aaKnown RBP13.16□□□□□ -0.3
THBS3-210ENST00000541576 CCNB3Q8WWL7 1395 aa13.16□□□□□ -0.3
THBS3-210ENST00000541576 NCOA2Q15596 1464 aa13.16□□□□□ -0.3
THBS3-210ENST00000541576 ATP10BO94823 1461 aa13.13□□□□□ -0.31
THBS3-210ENST00000541576 ABCC2Q92887 1545 aa13.12□□□□□ -0.31
THBS3-210ENST00000541576 ARHGEF11O15085 1522 aa13.12□□□□□ -0.31
THBS3-210ENST00000541576 TROQ12816 1431 aaPredicted RBP13.11□□□□□ -0.31
THBS3-210ENST00000541576 MYOM3Q5VTT5 1437 aa13.1□□□□□ -0.31
THBS3-210ENST00000541576 FGD6Q6ZV73 1430 aa13.1□□□□□ -0.31
THBS3-210ENST00000541576 PLEKHD1A6NEE1 506 aa13.1□□□□□ -0.31
THBS3-210ENST00000541576 UHRF1BP1LA0JNW5 1464 aa13.09□□□□□ -0.31
THBS3-210ENST00000541576 FAM50AQ14320 339 aaKnown RBP13.08□□□□□ -0.32
THBS3-210ENST00000541576 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.06□□□□□ -0.32
THBS3-210ENST00000541576 ADCY10Q96PN6 1610 aa13.06□□□□□ -0.32
THBS3-210ENST00000541576 ITGAEP38570 1179 aa13.05□□□□□ -0.32
THBS3-210ENST00000541576 KIF14Q15058 1648 aa13.04□□□□□ -0.32
THBS3-210ENST00000541576 KDM5BQ9UGL1 1544 aa13.04□□□□□ -0.32
THBS3-210ENST00000541576 MIA2Q96PC5 1412 aa13.03□□□□□ -0.32
THBS3-210ENST00000541576 PTPN23Q9H3S7 1636 aa13.03□□□□□ -0.32
THBS3-210ENST00000541576 ZCCHC11Q5TAX3 1644 aaKnown RBP13.02□□□□□ -0.32
THBS3-210ENST00000541576 TCOF1Q13428 1488 aaKnown RBP13□□□□□ -0.33
THBS3-210ENST00000541576 ABCC10Q5T3U5 1492 aa12.99□□□□□ -0.33
THBS3-210ENST00000541576 GPATCH8Q9UKJ3 1502 aaKnown RBP12.99□□□□□ -0.33
THBS3-210ENST00000541576 ITSN2Q9NZM3 1697 aa12.99□□□□□ -0.33
THBS3-210ENST00000541576 CCER1Q8TC90 406 aaPredicted RBP12.98□□□□□ -0.33
THBS3-210ENST00000541576 CFDP1Q9UEE9 299 aaPredicted RBP12.98□□□□□ -0.33
THBS3-210ENST00000541576 KCNH8Q96L42 1107 aa12.95□□□□□ -0.34
THBS3-210ENST00000541576 CDC42BPAQ5VT25 1732 aa12.95□□□□□ -0.34
THBS3-210ENST00000541576 NPM1P06748 294 aaKnown RBP eCLIP12.94□□□□□ -0.34
THBS3-210ENST00000541576 PELP1Q8IZL8 1130 aaKnown RBP12.94□□□□□ -0.34
THBS3-210ENST00000541576 ZNF644Q9H582 1327 aaPredicted RBP12.94□□□□□ -0.34
THBS3-210ENST00000541576 RIMBP3CA6NJZ7 1639 aa12.94□□□□□ -0.34
THBS3-210ENST00000541576 RIMBP3BA6NNM3 1639 aa12.94□□□□□ -0.34
THBS3-210ENST00000541576 RIMBP3Q9UFD9 1639 aa12.94□□□□□ -0.34
THBS3-210ENST00000541576 PTPRKQ15262 1439 aa12.93□□□□□ -0.34
THBS3-210ENST00000541576 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.93□□□□□ -0.34
THBS3-210ENST00000541576 ZNF777Q9ULD5 760 aaPredicted RBP12.93□□□□□ -0.34
THBS3-210ENST00000541576 CAMSAP2Q08AD1 1489 aa12.92□□□□□ -0.34
THBS3-210ENST00000541576 WDR7Q9Y4E6 1490 aa12.92□□□□□ -0.34
THBS3-210ENST00000541576 TTC37Q6PGP7 1564 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms