RNA–Protein interactions for RNA: ENST00000540891.1

CD9-209, Transcript of CD9 molecule, humanhuman

TSL 3

Gene CD9, Length 642 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD9-209ENST00000540891 KIAA0586Q9BVV6 1533 aa28.59■■■□□ 2.17
CD9-209ENST00000540891 JPH4Q96JJ6 628 aa28.59■■■□□ 2.17
CD9-209ENST00000540891 RAPGEF2Q9Y4G8 1499 aa28.56■■■□□ 2.16
CD9-209ENST00000540891 PRG4Q92954 1404 aaPredicted RBP28.54■■■□□ 2.16
CD9-209ENST00000540891 CHIC1Q5VXU3 224 aa28.52■■■□□ 2.16
CD9-209ENST00000540891 PRXQ9BXM0 1461 aa28.49■■■□□ 2.15
CD9-209ENST00000540891 IQGAP2Q13576 1575 aa28.41■■■□□ 2.14
CD9-209ENST00000540891 CSRNP3Q8WYN3 585 aa28.4■■■□□ 2.14
CD9-209ENST00000540891 EEA1Q15075 1411 aa28.39■■■□□ 2.14
CD9-209ENST00000540891 FAM9AQ8IZU1 332 aaPredicted RBP28.28■■■□□ 2.12
CD9-209ENST00000540891 CTTNBP2Q8WZ74 1663 aa28.28■■■□□ 2.12
CD9-209ENST00000540891 UGGT2Q9NYU1 1516 aa28.28■■■□□ 2.12
CD9-209ENST00000540891 DISP1Q96F81 1524 aa28.27■■■□□ 2.12
CD9-209ENST00000540891 CARMIL2Q6F5E8 1435 aa28.24■■■□□ 2.11
CD9-209ENST00000540891 TNIKQ9UKE5 1360 aa28.2■■■□□ 2.1
CD9-209ENST00000540891 PTPRGP23470 1445 aa28.18■■■□□ 2.1
CD9-209ENST00000540891 KIAA0556O60303 1618 aa28.17■■■□□ 2.1
CD9-209ENST00000540891 ADCY10Q96PN6 1610 aa28.14■■■□□ 2.1
CD9-209ENST00000540891 KIF21BO75037 1637 aa28.14■■■□□ 2.09
CD9-209ENST00000540891 TRHP20396 242 aaPredicted RBP28.12■■■□□ 2.09
CD9-209ENST00000540891 TTBK1Q5TCY1 1321 aaPredicted RBP28.11■■■□□ 2.09
CD9-209ENST00000540891 GOLGA3Q08378 1498 aa28.06■■■□□ 2.08
CD9-209ENST00000540891 UACAQ9BZF9 1416 aa28.01■■■□□ 2.07
CD9-209ENST00000540891 UHRF1BP1LA0JNW5 1464 aa28■■■□□ 2.07
CD9-209ENST00000540891 MAPKBP1O60336 1514 aa27.97■■■□□ 2.07
CD9-209ENST00000540891 NPM1P06748 294 aaKnown RBP eCLIP27.97■■■□□ 2.07
CD9-209ENST00000540891 SAMD9Q5K651 1589 aa27.96■■■□□ 2.07
CD9-209ENST00000540891 ABCC2Q92887 1545 aa27.96■■■□□ 2.07
CD9-209ENST00000540891 EHMT2Q96KQ7 1210 aa27.92■■■□□ 2.06
CD9-209ENST00000540891 PLB1Q6P1J6 1458 aa27.91■■■□□ 2.06
CD9-209ENST00000540891 P3H3Q8IVL6 736 aa27.91■■■□□ 2.06
CD9-209ENST00000540891 ABCA8O94911 1581 aa27.88■■■□□ 2.05
CD9-209ENST00000540891 KDM5BQ9UGL1 1544 aa27.87■■■□□ 2.05
CD9-209ENST00000540891 ABCC10Q5T3U5 1492 aa27.86■■■□□ 2.05
CD9-209ENST00000540891 KIF13AQ9H1H9 1805 aa27.85■■■□□ 2.05
CD9-209ENST00000540891 UBTFP17480 764 aaKnown RBP27.85■■■□□ 2.05
CD9-209ENST00000540891 RANGAP1P46060 587 aaPredicted RBP27.85■■■□□ 2.05
CD9-209ENST00000540891 DIP2BQ9P265 1576 aa27.82■■■□□ 2.04
CD9-209ENST00000540891 ZCCHC11Q5TAX3 1644 aaKnown RBP27.8■■■□□ 2.04
CD9-209ENST00000540891 FHOD3Q2V2M9 1422 aa27.79■■■□□ 2.04
CD9-209ENST00000540891 ASXL2Q76L83 1435 aa27.79■■■□□ 2.04
CD9-209ENST00000540891 EFCAB5A4FU69 1503 aa27.78■■■□□ 2.04
CD9-209ENST00000540891 FAM69CQ0P6D2 419 aa27.77■■■□□ 2.04
CD9-209ENST00000540891 RAPGEF6Q8TEU7 1601 aa27.68■■■□□ 2.02
CD9-209ENST00000540891 ARHGAP35Q9NRY4 1499 aa27.68■■■□□ 2.02
CD9-209ENST00000540891 ATP10BO94823 1461 aa27.64■■■□□ 2.02
CD9-209ENST00000540891 EPRSP07814 1512 aaKnown RBP27.64■■■□□ 2.02
CD9-209ENST00000540891 GLI2P10070 1586 aa27.64■■■□□ 2.01
CD9-209ENST00000540891 WDR7Q9Y4E6 1490 aa27.63■■■□□ 2.01
CD9-209ENST00000540891 ARID3CA6NKF2 412 aa27.62■■■□□ 2.01
CD9-209ENST00000540891 NUP153P49790 1475 aaKnown RBP27.62■■■□□ 2.01
CD9-209ENST00000540891 TSPOAP1O95153 1857 aa27.53■■■□□ 2
CD9-209ENST00000540891 MAP3K4Q9Y6R4 1608 aa27.52■■■□□ 2
CD9-209ENST00000540891 FMN1Q68DA7 1419 aa27.51■■□□□ 1.99
CD9-209ENST00000540891 PPRC1Q5VV67 1664 aaKnown RBP27.51■■□□□ 1.99
CD9-209ENST00000540891 KCNH8Q96L42 1107 aa27.47■■□□□ 1.99
CD9-209ENST00000540891 CLIP1P30622 1438 aa27.44■■□□□ 1.98
CD9-209ENST00000540891 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.43■■□□□ 1.98
CD9-209ENST00000540891 HNRNPUL2Q1KMD3 747 aaKnown RBP27.43■■□□□ 1.98
CD9-209ENST00000540891 CDK13Q14004 1512 aaKnown RBP27.41■■□□□ 1.98
CD9-209ENST00000540891 HECW1Q76N89 1606 aa27.4■■□□□ 1.98
CD9-209ENST00000540891 CFAP43Q8NDM7 1665 aa27.39■■□□□ 1.97
CD9-209ENST00000540891 CD109Q6YHK3 1445 aa27.38■■□□□ 1.97
CD9-209ENST00000540891 LOC105371045A0A1W2PR82 267 aa27.36■■□□□ 1.97
CD9-209ENST00000540891 KDM6BO15054 1643 aa27.35■■□□□ 1.97
CD9-209ENST00000540891 MAGI3Q5TCQ9 1506 aa27.35■■□□□ 1.97
CD9-209ENST00000540891 TEX14Q8IWB6 1497 aa27.34■■□□□ 1.97
CD9-209ENST00000540891 ABCA9Q8IUA7 1624 aa27.34■■□□□ 1.97
CD9-209ENST00000540891 PLEKHD1A6NEE1 506 aa27.33■■□□□ 1.97
CD9-209ENST00000540891 ATP1B4Q9UN42 357 aaPredicted RBP27.33■■□□□ 1.97
CD9-209ENST00000540891 PCF11O94913 1555 aaKnown RBP27.33■■□□□ 1.97
CD9-209ENST00000540891 CEP162Q5TB80 1403 aa27.32■■□□□ 1.96
CD9-209ENST00000540891 CASKIN1Q8WXD9 1431 aa27.32■■□□□ 1.96
CD9-209ENST00000540891 LRRIQ1Q96JM4 1722 aa27.3■■□□□ 1.96
CD9-209ENST00000540891 COL17A1Q9UMD9 1497 aaPredicted RBP27.29■■□□□ 1.96
CD9-209ENST00000540891 FYCO1Q9BQS8 1478 aa27.24■■□□□ 1.95
CD9-209ENST00000540891 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.22■■□□□ 1.95
CD9-209ENST00000540891 CCDC18Q5T9S5 1454 aa27.19■■□□□ 1.94
CD9-209ENST00000540891 TTC37Q6PGP7 1564 aa27.18■■□□□ 1.94
CD9-209ENST00000540891 CDK11AQ9UQ88 783 aaPredicted RBP27.17■■□□□ 1.94
CD9-209ENST00000540891 TROQ12816 1431 aaPredicted RBP27.16■■□□□ 1.94
CD9-209ENST00000540891 KIF14Q15058 1648 aa27.12■■□□□ 1.93
CD9-209ENST00000540891 NEO1Q92859 1461 aa27.12■■□□□ 1.93
CD9-209ENST00000540891 ARAP3Q8WWN8 1544 aa27.11■■□□□ 1.93
CD9-209ENST00000540891 PHLDB1Q86UU1 1377 aa27.09■■□□□ 1.93
CD9-209ENST00000540891 PLCH2O75038 1416 aa27.05■■□□□ 1.92
CD9-209ENST00000540891 FANCAO15360 1455 aa27.04■■□□□ 1.92
CD9-209ENST00000540891 AKNAQ7Z591 1439 aa27■■□□□ 1.91
CD9-209ENST00000540891 VPS8Q8N3P4 1428 aa26.99■■□□□ 1.91
CD9-209ENST00000540891 CFAP74Q9C0B2 1584 aa26.99■■□□□ 1.91
CD9-209ENST00000540891 MYO5CQ9NQX4 1742 aa26.99■■□□□ 1.91
CD9-209ENST00000540891 FRMPD1Q5SYB0 1578 aa26.97■■□□□ 1.91
CD9-209ENST00000540891 RAPGEF3O95398 923 aa26.97■■□□□ 1.91
CD9-209ENST00000540891 DENND4BO75064 1496 aaPredicted RBP26.92■■□□□ 1.9
CD9-209ENST00000540891 EFCAB2Q5VUJ9 269 aa26.9■■□□□ 1.9
CD9-209ENST00000540891 CDC42BPBQ9Y5S2 1711 aa26.9■■□□□ 1.9
CD9-209ENST00000540891 ARHGAP5Q13017 1502 aa26.9■■□□□ 1.9
CD9-209ENST00000540891 ADGRL1O94910 1474 aa26.89■■□□□ 1.9
CD9-209ENST00000540891 MTUS2Q5JR59 1369 aa26.89■■□□□ 1.9
CD9-209ENST00000540891 RICTORQ6R327 1708 aa26.89■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms