RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 JPH4Q96JJ6 628 aa13.18□□□□□ -0.3
YBX3-209ENST00000540747 ABCC10Q5T3U5 1492 aa13.15□□□□□ -0.3
YBX3-209ENST00000540747 MAPKBP1O60336 1514 aa13.14□□□□□ -0.31
YBX3-209ENST00000540747 ADCY10Q96PN6 1610 aa13.12□□□□□ -0.31
YBX3-209ENST00000540747 KIAA0586Q9BVV6 1533 aa13.11□□□□□ -0.31
YBX3-209ENST00000540747 DIP2BQ9P265 1576 aa13.11□□□□□ -0.31
YBX3-209ENST00000540747 IGF1RP08069 1367 aa13.1□□□□□ -0.31
YBX3-209ENST00000540747 FAM69CQ0P6D2 419 aa13.06□□□□□ -0.32
YBX3-209ENST00000540747 CUL7Q14999 1698 aa13.05□□□□□ -0.32
YBX3-209ENST00000540747 KIF27Q86VH2 1401 aa13.05□□□□□ -0.32
YBX3-209ENST00000540747 NPM1P06748 294 aaKnown RBP eCLIP13.01□□□□□ -0.33
YBX3-209ENST00000540747 KDM6BO15054 1643 aa12.98□□□□□ -0.33
YBX3-209ENST00000540747 PTPRGP23470 1445 aa12.97□□□□□ -0.33
YBX3-209ENST00000540747 CARMIL1Q5VZK9 1371 aa12.97□□□□□ -0.33
YBX3-209ENST00000540747 ABCC2Q92887 1545 aa12.97□□□□□ -0.33
YBX3-209ENST00000540747 KDM4FA0A1W2PPD8 638 aa12.96□□□□□ -0.33
YBX3-209ENST00000540747 TNIKQ9UKE5 1360 aa12.95□□□□□ -0.34
YBX3-209ENST00000540747 UHRF1BP1LA0JNW5 1464 aa12.95□□□□□ -0.34
YBX3-209ENST00000540747 GLI2P10070 1586 aa12.94□□□□□ -0.34
YBX3-209ENST00000540747 IQGAP2Q13576 1575 aa12.94□□□□□ -0.34
YBX3-209ENST00000540747 PPRC1Q5VV67 1664 aaKnown RBP12.93□□□□□ -0.34
YBX3-209ENST00000540747 DISP1Q96F81 1524 aa12.93□□□□□ -0.34
YBX3-209ENST00000540747 PLB1Q6P1J6 1458 aa12.92□□□□□ -0.34
YBX3-209ENST00000540747 CARMIL2Q6F5E8 1435 aa12.92□□□□□ -0.34
YBX3-209ENST00000540747 ASXL2Q76L83 1435 aa12.92□□□□□ -0.34
YBX3-209ENST00000540747 TSPOAP1O95153 1857 aa12.91□□□□□ -0.34
YBX3-209ENST00000540747 UACAQ9BZF9 1416 aa12.89□□□□□ -0.35
YBX3-209ENST00000540747 KDM5BQ9UGL1 1544 aa12.89□□□□□ -0.35
YBX3-209ENST00000540747 UGGT2Q9NYU1 1516 aa12.88□□□□□ -0.35
YBX3-209ENST00000540747 COL17A1Q9UMD9 1497 aaPredicted RBP12.87□□□□□ -0.35
YBX3-209ENST00000540747 EPRSP07814 1512 aaKnown RBP12.87□□□□□ -0.35
YBX3-209ENST00000540747 RAPGEF2Q9Y4G8 1499 aa12.85□□□□□ -0.35
YBX3-209ENST00000540747 MAP3K4Q9Y6R4 1608 aa12.84□□□□□ -0.35
YBX3-209ENST00000540747 KIAA0556O60303 1618 aa12.84□□□□□ -0.35
YBX3-209ENST00000540747 TTBK1Q5TCY1 1321 aaPredicted RBP12.82□□□□□ -0.36
YBX3-209ENST00000540747 ZCCHC11Q5TAX3 1644 aaKnown RBP12.81□□□□□ -0.36
YBX3-209ENST00000540747 ADGRL1O94910 1474 aa12.81□□□□□ -0.36
YBX3-209ENST00000540747 TEX14Q8IWB6 1497 aa12.78□□□□□ -0.36
YBX3-209ENST00000540747 WDR7Q9Y4E6 1490 aa12.78□□□□□ -0.36
YBX3-209ENST00000540747 ABCA8O94911 1581 aa12.75□□□□□ -0.37
YBX3-209ENST00000540747 MAGI3Q5TCQ9 1506 aa12.74□□□□□ -0.37
YBX3-209ENST00000540747 PRXQ9BXM0 1461 aa12.72□□□□□ -0.37
YBX3-209ENST00000540747 CTTNBP2Q8WZ74 1663 aa12.72□□□□□ -0.37
YBX3-209ENST00000540747 GOLGA3Q08378 1498 aa12.72□□□□□ -0.37
YBX3-209ENST00000540747 CFAP43Q8NDM7 1665 aa12.7□□□□□ -0.38
YBX3-209ENST00000540747 ILDR1Q86SU0 546 aaPredicted RBP12.69□□□□□ -0.38
YBX3-209ENST00000540747 CD109Q6YHK3 1445 aa12.69□□□□□ -0.38
YBX3-209ENST00000540747 HECW2Q9P2P5 1572 aa12.69□□□□□ -0.38
YBX3-209ENST00000540747 ARAP3Q8WWN8 1544 aa12.64□□□□□ -0.39
YBX3-209ENST00000540747 ATP10BO94823 1461 aa12.62□□□□□ -0.39
YBX3-209ENST00000540747 ABCA9Q8IUA7 1624 aa12.6□□□□□ -0.39
YBX3-209ENST00000540747 KCNH8Q96L42 1107 aa12.6□□□□□ -0.39
YBX3-209ENST00000540747 SAMD9Q5K651 1589 aa12.6□□□□□ -0.39
YBX3-209ENST00000540747 KIF21BO75037 1637 aa12.59□□□□□ -0.39
YBX3-209ENST00000540747 PHLDB1Q86UU1 1377 aa12.57□□□□□ -0.4
YBX3-209ENST00000540747 ADAMTSL3P82987 1691 aa12.55□□□□□ -0.4
YBX3-209ENST00000540747 NEO1Q92859 1461 aa12.55□□□□□ -0.4
YBX3-209ENST00000540747 FRMPD1Q5SYB0 1578 aa12.55□□□□□ -0.4
YBX3-209ENST00000540747 NUP153P49790 1475 aaKnown RBP12.53□□□□□ -0.4
YBX3-209ENST00000540747 RAPGEF6Q8TEU7 1601 aa12.53□□□□□ -0.4
YBX3-209ENST00000540747 PTPRMP28827 1452 aa12.52□□□□□ -0.41
YBX3-209ENST00000540747 ARID3CA6NKF2 412 aa12.51□□□□□ -0.41
YBX3-209ENST00000540747 P3H3Q8IVL6 736 aa12.51□□□□□ -0.41
YBX3-209ENST00000540747 CSRNP3Q8WYN3 585 aa12.5□□□□□ -0.41
YBX3-209ENST00000540747 RAPGEF3O95398 923 aa12.49□□□□□ -0.41
YBX3-209ENST00000540747 BCORL1Q5H9F3 1711 aa12.48□□□□□ -0.41
YBX3-209ENST00000540747 ARHGEF40Q8TER5 1519 aa12.47□□□□□ -0.41
YBX3-209ENST00000540747 FHOD3Q2V2M9 1422 aa12.46□□□□□ -0.41
YBX3-209ENST00000540747 EEA1Q15075 1411 aa12.45□□□□□ -0.42
YBX3-209ENST00000540747 MADDQ8WXG6 1647 aa12.45□□□□□ -0.42
YBX3-209ENST00000540747 LMTK3Q96Q04 1460 aa12.45□□□□□ -0.42
YBX3-209ENST00000540747 RICTORQ6R327 1708 aa12.45□□□□□ -0.42
YBX3-209ENST00000540747 PCF11O94913 1555 aaKnown RBP12.44□□□□□ -0.42
YBX3-209ENST00000540747 ZMYM4Q5VZL5 1548 aa12.44□□□□□ -0.42
YBX3-209ENST00000540747 FAM9AQ8IZU1 332 aaPredicted RBP12.44□□□□□ -0.42
YBX3-209ENST00000540747 DENND4BO75064 1496 aaPredicted RBP12.43□□□□□ -0.42
YBX3-209ENST00000540747 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.42□□□□□ -0.42
YBX3-209ENST00000540747 FBXO41Q8TF61 875 aa12.42□□□□□ -0.42
YBX3-209ENST00000540747 AKNAQ7Z591 1439 aa12.42□□□□□ -0.42
YBX3-209ENST00000540747 EFCAB5A4FU69 1503 aa12.42□□□□□ -0.42
YBX3-209ENST00000540747 FANCAO15360 1455 aa12.41□□□□□ -0.42
YBX3-209ENST00000540747 TTC37Q6PGP7 1564 aa12.41□□□□□ -0.42
YBX3-209ENST00000540747 SIGLEC1Q9BZZ2 1709 aa12.4□□□□□ -0.42
YBX3-209ENST00000540747 CFAP74Q9C0B2 1584 aa12.39□□□□□ -0.43
YBX3-209ENST00000540747 YEATS2Q9ULM3 1422 aa12.38□□□□□ -0.43
YBX3-209ENST00000540747 PLEKHD1A6NEE1 506 aa12.38□□□□□ -0.43
YBX3-209ENST00000540747 MAGI2Q86UL8 1455 aa12.38□□□□□ -0.43
YBX3-209ENST00000540747 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.37□□□□□ -0.43
YBX3-209ENST00000540747 HNRNPUL2Q1KMD3 747 aaKnown RBP12.37□□□□□ -0.43
YBX3-209ENST00000540747 RIMS1Q86UR5 1692 aaKnown RBP12.37□□□□□ -0.43
YBX3-209ENST00000540747 ZFYVE16Q7Z3T8 1539 aa12.37□□□□□ -0.43
YBX3-209ENST00000540747 CDK13Q14004 1512 aaKnown RBP12.36□□□□□ -0.43
YBX3-209ENST00000540747 POGZQ7Z3K3 1410 aa12.36□□□□□ -0.43
YBX3-209ENST00000540747 ARID4BQ4LE39 1312 aaPredicted RBP12.36□□□□□ -0.43
YBX3-209ENST00000540747 PLCH2O75038 1416 aa12.35□□□□□ -0.43
YBX3-209ENST00000540747 HECW1Q76N89 1606 aa12.34□□□□□ -0.43
YBX3-209ENST00000540747 ARHGEF12Q9NZN5 1544 aa12.32□□□□□ -0.44
YBX3-209ENST00000540747 SCAPERQ9BY12 1400 aa12.31□□□□□ -0.44
YBX3-209ENST00000540747 RANGAP1P46060 587 aaPredicted RBP12.31□□□□□ -0.44
YBX3-209ENST00000540747 ARHGAP35Q9NRY4 1499 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms