RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 CCDC88BA6NC98 1476 aa19.5■□□□□ 0.71
COLCA1-204ENST00000540738 FHAD1B1AJZ9 1412 aa19.49■□□□□ 0.71
COLCA1-204ENST00000540738 SCAF1Q9H7N4 1312 aaKnown RBP19.48■□□□□ 0.71
COLCA1-204ENST00000540738 RRP7BPQ9NSQ0 103 aa19.48■□□□□ 0.71
COLCA1-204ENST00000540738 CEP162Q5TB80 1403 aa19.48■□□□□ 0.71
COLCA1-204ENST00000540738 TNIKQ9UKE5 1360 aa19.47■□□□□ 0.71
COLCA1-204ENST00000540738 KDM2AQ9Y2K7 1162 aa19.45■□□□□ 0.7
COLCA1-204ENST00000540738 ATAD2BQ9ULI0 1458 aa19.45■□□□□ 0.7
COLCA1-204ENST00000540738 ZNF316A6NFI3 1004 aaPredicted RBP19.45■□□□□ 0.7
COLCA1-204ENST00000540738 TDRD9Q8NDG6 1382 aaKnown RBP19.44■□□□□ 0.7
COLCA1-204ENST00000540738 CCNB3Q8WWL7 1395 aa19.44■□□□□ 0.7
COLCA1-204ENST00000540738 TOP2AP11388 1531 aaKnown RBP19.41■□□□□ 0.7
COLCA1-204ENST00000540738 HDGFP51858 240 aaKnown RBP19.37■□□□□ 0.69
COLCA1-204ENST00000540738 ABCC8Q09428 1581 aa19.36■□□□□ 0.69
COLCA1-204ENST00000540738 KANK1Q14678 1352 aa19.36■□□□□ 0.69
COLCA1-204ENST00000540738 HAP1P54257 671 aaPredicted RBP19.35■□□□□ 0.69
COLCA1-204ENST00000540738 OSCARQ8IYS5 282 aa19.29■□□□□ 0.68
COLCA1-204ENST00000540738 SMARCA4P51532 1647 aa19.29■□□□□ 0.68
COLCA1-204ENST00000540738 NPM2Q86SE8 214 aaKnown RBP19.28■□□□□ 0.68
COLCA1-204ENST00000540738 MLECQ14165 292 aa19.28■□□□□ 0.68
COLCA1-204ENST00000540738 FANCD2Q9BXW9 1451 aa19.28■□□□□ 0.68
COLCA1-204ENST00000540738 RGL3Q3MIN7 710 aa19.27■□□□□ 0.68
COLCA1-204ENST00000540738 EFCAB2Q5VUJ9 269 aa19.27■□□□□ 0.68
COLCA1-204ENST00000540738 CDCA8Q53HL2 280 aa19.26■□□□□ 0.67
COLCA1-204ENST00000540738 A0A0G2JS52 829 aa19.25■□□□□ 0.67
COLCA1-204ENST00000540738 SENP3Q9H4L4 574 aaPredicted RBP19.24■□□□□ 0.67
COLCA1-204ENST00000540738 ZBTB7CA1YPR0 619 aa19.23■□□□□ 0.67
COLCA1-204ENST00000540738 FMN1Q68DA7 1419 aa19.22■□□□□ 0.67
COLCA1-204ENST00000540738 WIZO95785 1651 aa19.21■□□□□ 0.67
COLCA1-204ENST00000540738 WDR43Q15061 677 aaKnown RBP eCLIP19.21■□□□□ 0.67
COLCA1-204ENST00000540738 JPH4Q96JJ6 628 aa19.2■□□□□ 0.66
COLCA1-204ENST00000540738 EIF4G2P78344 907 aaKnown RBP eCLIP19.19■□□□□ 0.66
COLCA1-204ENST00000540738 TMC1Q8TDI8 760 aa19.19■□□□□ 0.66
COLCA1-204ENST00000540738 POGKQ9P215 609 aa19.19■□□□□ 0.66
COLCA1-204ENST00000540738 BCL11AQ9H165 835 aa19.17■□□□□ 0.66
COLCA1-204ENST00000540738 PLEKHG5O94827 1062 aa19.16■□□□□ 0.66
COLCA1-204ENST00000540738 GGT6Q6P531 493 aa19.14■□□□□ 0.66
COLCA1-204ENST00000540738 RAPGEF2Q9Y4G8 1499 aa19.13■□□□□ 0.65
COLCA1-204ENST00000540738 NCAPD3P42695 1498 aa19.12■□□□□ 0.65
COLCA1-204ENST00000540738 CYB5RLQ6IPT4 315 aa19.11■□□□□ 0.65
COLCA1-204ENST00000540738 DDX10Q13206 875 aaKnown RBP19.09■□□□□ 0.65
COLCA1-204ENST00000540738 LMOD2Q6P5Q4 547 aa19.09■□□□□ 0.65
COLCA1-204ENST00000540738 CFAP53Q96M91 514 aa19.08■□□□□ 0.65
COLCA1-204ENST00000540738 RSPH4AQ5TD94 716 aa19.06■□□□□ 0.64
COLCA1-204ENST00000540738 ARHGAP35Q9NRY4 1499 aa19.06■□□□□ 0.64
COLCA1-204ENST00000540738 CARD11Q9BXL7 1154 aa19.05■□□□□ 0.64
COLCA1-204ENST00000540738 PTPRGP23470 1445 aa19.04■□□□□ 0.64
COLCA1-204ENST00000540738 FAM9BQ8IZU0 186 aa19.02■□□□□ 0.64
COLCA1-204ENST00000540738 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.02■□□□□ 0.64
COLCA1-204ENST00000540738 KNSTRNQ9Y448 316 aa19.01■□□□□ 0.63
COLCA1-204ENST00000540738 VPS8Q8N3P4 1428 aa19■□□□□ 0.63
COLCA1-204ENST00000540738 SPAG9O60271 1321 aaKnown RBP18.98■□□□□ 0.63
COLCA1-204ENST00000540738 ANKRD30AQ9BXX3 1397 aa18.98■□□□□ 0.63
COLCA1-204ENST00000540738 MRS2Q9HD23 443 aa18.97■□□□□ 0.63
COLCA1-204ENST00000540738 CCDC18Q5T9S5 1454 aa18.97■□□□□ 0.63
COLCA1-204ENST00000540738 HNRNPUQ00839 825 aaKnown RBP eCLIP18.97■□□□□ 0.63
COLCA1-204ENST00000540738 GAPVD1Q14C86 1478 aa18.96■□□□□ 0.63
COLCA1-204ENST00000540738 EID1Q9Y6B2 187 aa18.95■□□□□ 0.62
COLCA1-204ENST00000540738 KIF3BO15066 747 aa18.93■□□□□ 0.62
COLCA1-204ENST00000540738 SALL2Q9Y467 1007 aaPredicted RBP18.93■□□□□ 0.62
COLCA1-204ENST00000540738 MYT1Q01538 1121 aa18.93■□□□□ 0.62
COLCA1-204ENST00000540738 RTL5Q5HYW3 569 aaPredicted RBP18.93■□□□□ 0.62
COLCA1-204ENST00000540738 PPM1GO15355 546 aaPredicted RBP18.92■□□□□ 0.62
COLCA1-204ENST00000540738 NUDCQ9Y266 331 aa18.92■□□□□ 0.62
COLCA1-204ENST00000540738 FGD5Q6ZNL6 1462 aa18.9■□□□□ 0.62
COLCA1-204ENST00000540738 DCAF11Q8TEB1 546 aa18.9■□□□□ 0.62
COLCA1-204ENST00000540738 FHOD3Q2V2M9 1422 aa18.89■□□□□ 0.62
COLCA1-204ENST00000540738 WASHC2CQ9Y4E1 1318 aa18.88■□□□□ 0.61
COLCA1-204ENST00000540738 MYH16Q9H6N6 1097 aa18.86■□□□□ 0.61
COLCA1-204ENST00000540738 SRPK2P78362 688 aaKnown RBP18.86■□□□□ 0.61
COLCA1-204ENST00000540738 TMF1P82094 1093 aa18.86■□□□□ 0.61
COLCA1-204ENST00000540738 AEBP2Q6ZN18 517 aaPredicted RBP18.86■□□□□ 0.61
COLCA1-204ENST00000540738 PKD2Q13563 968 aa18.86■□□□□ 0.61
COLCA1-204ENST00000540738 CC2D2AQ9P2K1 1620 aa18.84■□□□□ 0.61
COLCA1-204ENST00000540738 HNRNPMP52272 730 aaKnown RBP eCLIP18.84■□□□□ 0.61
COLCA1-204ENST00000540738 MRC2Q9UBG0 1479 aa18.84■□□□□ 0.61
COLCA1-204ENST00000540738 NUP155O75694 1391 aa18.84■□□□□ 0.61
COLCA1-204ENST00000540738 MAPK8IP3Q9UPT6 1336 aa18.84■□□□□ 0.61
COLCA1-204ENST00000540738 FAM69CQ0P6D2 419 aa18.83■□□□□ 0.6
COLCA1-204ENST00000540738 HIRIP3Q9BW71 556 aaPredicted RBP18.81■□□□□ 0.6
COLCA1-204ENST00000540738 ARXQ96QS3 562 aa18.81■□□□□ 0.6
COLCA1-204ENST00000540738 PNNQ9H307 717 aaKnown RBP18.81■□□□□ 0.6
COLCA1-204ENST00000540738 TIMELESSQ9UNS1 1208 aa18.81■□□□□ 0.6
COLCA1-204ENST00000540738 SETD5Q9C0A6 1442 aa18.8■□□□□ 0.6
COLCA1-204ENST00000540738 GRIN2BQ13224 1484 aa18.79■□□□□ 0.6
COLCA1-204ENST00000540738 UPF2Q9HAU5 1272 aaKnown RBP18.79■□□□□ 0.6
COLCA1-204ENST00000540738 RAD54L2Q9Y4B4 1467 aa18.79■□□□□ 0.6
COLCA1-204ENST00000540738 STK26Q9P289 416 aa18.78■□□□□ 0.6
COLCA1-204ENST00000540738 HDGFL2Q7Z4V5 671 aaPredicted RBP18.77■□□□□ 0.6
COLCA1-204ENST00000540738 AQRO60306 1485 aaKnown RBP eCLIP18.77■□□□□ 0.6
COLCA1-204ENST00000540738 IFT140Q96RY7 1462 aa18.76■□□□□ 0.59
COLCA1-204ENST00000540738 KANK4Q5T7N3 995 aaPredicted RBP18.75■□□□□ 0.59
COLCA1-204ENST00000540738 NPHP1O15259 732 aa18.75■□□□□ 0.59
COLCA1-204ENST00000540738 HMGXB3Q12766 1538 aa18.75■□□□□ 0.59
COLCA1-204ENST00000540738 SAFB2Q14151 953 aaKnown RBP eCLIP18.74■□□□□ 0.59
COLCA1-204ENST00000540738 SIN3AQ96ST3 1273 aa18.73■□□□□ 0.59
COLCA1-204ENST00000540738 CFTRP13569 1480 aa18.72■□□□□ 0.59
COLCA1-204ENST00000540738 IGF1RP08069 1367 aa18.72■□□□□ 0.59
COLCA1-204ENST00000540738 EIF3AQ14152 1382 aaKnown RBP18.68■□□□□ 0.58
COLCA1-204ENST00000540738 HSP90AA1P07900 732 aaKnown RBP18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms