RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 RTL5Q5HYW3 569 aaPredicted RBP17.89■□□□□ 0.45
MSH6-210ENST00000540021 KIF27Q86VH2 1401 aa17.86■□□□□ 0.45
MSH6-210ENST00000540021 KIF21BO75037 1637 aa17.85■□□□□ 0.45
MSH6-210ENST00000540021 MRS2Q9HD23 443 aa17.84■□□□□ 0.45
MSH6-210ENST00000540021 RRP7BPQ9NSQ0 103 aa17.83■□□□□ 0.45
MSH6-210ENST00000540021 UNC13AQ9UPW8 1703 aa17.83■□□□□ 0.44
MSH6-210ENST00000540021 SETD5Q9C0A6 1442 aa17.82■□□□□ 0.44
MSH6-210ENST00000540021 NPM2Q86SE8 214 aaKnown RBP17.81■□□□□ 0.44
MSH6-210ENST00000540021 B4GALNT3Q6L9W6 998 aa17.81■□□□□ 0.44
MSH6-210ENST00000540021 SYNJ1O43426 1573 aa17.79■□□□□ 0.44
MSH6-210ENST00000540021 PPP1R15AO75807 674 aaPredicted RBP17.77■□□□□ 0.43
MSH6-210ENST00000540021 CCER2I3L3R5 266 aa17.76■□□□□ 0.43
MSH6-210ENST00000540021 SALL2Q9Y467 1007 aaPredicted RBP17.76■□□□□ 0.43
MSH6-210ENST00000540021 MTUS2Q5JR59 1369 aa17.76■□□□□ 0.43
MSH6-210ENST00000540021 ANP32AP39687 249 aaKnown RBP17.73■□□□□ 0.43
MSH6-210ENST00000540021 EIF4G2P78344 907 aaKnown RBP eCLIP17.72■□□□□ 0.43
MSH6-210ENST00000540021 CCDC136Q96JN2 1154 aa17.72■□□□□ 0.43
MSH6-210ENST00000540021 EIF4G1Q04637 1599 aaKnown RBP17.71■□□□□ 0.43
MSH6-210ENST00000540021 ARAP1Q96P48 1450 aa17.7■□□□□ 0.42
MSH6-210ENST00000540021 CUX2O14529 1486 aa17.69■□□□□ 0.42
MSH6-210ENST00000540021 PPP4R2Q9NY27 417 aa17.67■□□□□ 0.42
MSH6-210ENST00000540021 DAXXQ9UER7 740 aaPredicted RBP17.66■□□□□ 0.42
MSH6-210ENST00000540021 ATAD2BQ9ULI0 1458 aa17.66■□□□□ 0.42
MSH6-210ENST00000540021 CARMIL1Q5VZK9 1371 aa17.66■□□□□ 0.42
MSH6-210ENST00000540021 HSPA5P11021 654 aaKnown RBP17.65■□□□□ 0.42
MSH6-210ENST00000540021 FOXD1Q16676 465 aa17.64■□□□□ 0.41
MSH6-210ENST00000540021 TIMELESSQ9UNS1 1208 aa17.62■□□□□ 0.41
MSH6-210ENST00000540021 ZBTB47Q9UFB7 747 aaPredicted RBP17.61■□□□□ 0.41
MSH6-210ENST00000540021 ZNF777Q9ULD5 760 aaPredicted RBP17.61■□□□□ 0.41
MSH6-210ENST00000540021 DEKP35659 375 aaKnown RBP17.6■□□□□ 0.41
MSH6-210ENST00000540021 RRBP1Q9P2E9 1410 aaKnown RBP17.59■□□□□ 0.41
MSH6-210ENST00000540021 PHLDB1Q86UU1 1377 aa17.59■□□□□ 0.41
MSH6-210ENST00000540021 TMC1Q8TDI8 760 aa17.57■□□□□ 0.4
MSH6-210ENST00000540021 BICRAQ9NZM4 1560 aa17.57■□□□□ 0.4
MSH6-210ENST00000540021 WDR97A6NE52 1622 aa17.56■□□□□ 0.4
MSH6-210ENST00000540021 FHAD1B1AJZ9 1412 aa17.55■□□□□ 0.4
MSH6-210ENST00000540021 NOP58Q9Y2X3 529 aaKnown RBP17.55■□□□□ 0.4
MSH6-210ENST00000540021 ARHGAP35Q9NRY4 1499 aa17.55■□□□□ 0.4
MSH6-210ENST00000540021 FHOD3Q2V2M9 1422 aa17.55■□□□□ 0.4
MSH6-210ENST00000540021 MSH5O43196 834 aa17.53■□□□□ 0.4
MSH6-210ENST00000540021 SLC4A1APQ9BWU0 796 aaKnown RBP17.53■□□□□ 0.4
MSH6-210ENST00000540021 RTN4Q9NQC3 1192 aaKnown RBP17.52■□□□□ 0.39
MSH6-210ENST00000540021 KDM2AQ9Y2K7 1162 aa17.51■□□□□ 0.39
MSH6-210ENST00000540021 MYT1LQ9UL68 1186 aa17.5■□□□□ 0.39
MSH6-210ENST00000540021 PRXQ9BXM0 1461 aa17.49■□□□□ 0.39
MSH6-210ENST00000540021 LAS1LQ9Y4W2 734 aaKnown RBP17.47■□□□□ 0.39
MSH6-210ENST00000540021 L3MBTL2Q969R5 705 aa17.45■□□□□ 0.38
MSH6-210ENST00000540021 CCDC184Q52MB2 194 aa17.45■□□□□ 0.38
MSH6-210ENST00000540021 IGF1RP08069 1367 aa17.44■□□□□ 0.38
MSH6-210ENST00000540021 FANCIQ9NVI1 1328 aa17.43■□□□□ 0.38
MSH6-210ENST00000540021 LRRC9Q6ZRR7 1453 aa17.42■□□□□ 0.38
MSH6-210ENST00000540021 ERICH3Q5RHP9 1530 aa17.4■□□□□ 0.38
MSH6-210ENST00000540021 FBLN2P98095 1184 aa17.4■□□□□ 0.38
MSH6-210ENST00000540021 WASHC2AQ641Q2 1341 aa17.4■□□□□ 0.38
MSH6-210ENST00000540021 MPHOSPH9Q99550 1183 aa17.39■□□□□ 0.37
MSH6-210ENST00000540021 PRKRIP1Q9H875 184 aaPredicted RBP17.39■□□□□ 0.37
MSH6-210ENST00000540021 CCDC18Q5T9S5 1454 aa17.38■□□□□ 0.37
MSH6-210ENST00000540021 TOP2BQ02880 1626 aa17.38■□□□□ 0.37
MSH6-210ENST00000540021 EIF5BO60841 1220 aaKnown RBP17.36■□□□□ 0.37
MSH6-210ENST00000540021 MAPKBP1O60336 1514 aa17.34■□□□□ 0.37
MSH6-210ENST00000540021 NEFMP07197 916 aa17.33■□□□□ 0.37
MSH6-210ENST00000540021 ERICH6BQ5W0A0 696 aa17.33■□□□□ 0.37
MSH6-210ENST00000540021 FMN1Q68DA7 1419 aa17.32■□□□□ 0.36
MSH6-210ENST00000540021 CUX1P39880 1505 aa17.32■□□□□ 0.36
MSH6-210ENST00000540021 PAK3O75914 559 aaPredicted RBP17.31■□□□□ 0.36
MSH6-210ENST00000540021 CARD11Q9BXL7 1154 aa17.29■□□□□ 0.36
MSH6-210ENST00000540021 TDRD9Q8NDG6 1382 aaKnown RBP17.29■□□□□ 0.36
MSH6-210ENST00000540021 TIAM1Q13009 1591 aa17.28■□□□□ 0.36
MSH6-210ENST00000540021 FGD6Q6ZV73 1430 aa17.27■□□□□ 0.36
MSH6-210ENST00000540021 RGL3Q3MIN7 710 aa17.27■□□□□ 0.35
MSH6-210ENST00000540021 IPO9Q96P70 1041 aaKnown RBP17.27■□□□□ 0.35
MSH6-210ENST00000540021 ZBED9Q6R2W3 1325 aa17.27■□□□□ 0.35
MSH6-210ENST00000540021 NUDCQ9Y266 331 aa17.26■□□□□ 0.35
MSH6-210ENST00000540021 PEG3Q9GZU2 1588 aa17.26■□□□□ 0.35
MSH6-210ENST00000540021 UACAQ9BZF9 1416 aa17.24■□□□□ 0.35
MSH6-210ENST00000540021 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.24■□□□□ 0.351e-10■■■□□ 14.8
MSH6-210ENST00000540021 ARXQ96QS3 562 aa17.24■□□□□ 0.35
MSH6-210ENST00000540021 FGD5Q6ZNL6 1462 aa17.24■□□□□ 0.35
MSH6-210ENST00000540021 C11orf95C9JLR9 678 aaPredicted RBP17.23■□□□□ 0.35
MSH6-210ENST00000540021 CFDP1Q9UEE9 299 aaPredicted RBP17.21■□□□□ 0.35
MSH6-210ENST00000540021 CADPSQ9ULU8 1353 aa17.21■□□□□ 0.35
MSH6-210ENST00000540021 CCDC7Q96M83 1385 aa17.2■□□□□ 0.34
MSH6-210ENST00000540021 KIF7Q2M1P5 1343 aa17.2■□□□□ 0.34
MSH6-210ENST00000540021 CC2D1BQ5T0F9 858 aaKnown RBP17.2■□□□□ 0.34
MSH6-210ENST00000540021 RAD54L2Q9Y4B4 1467 aa17.2■□□□□ 0.34
MSH6-210ENST00000540021 AKNAQ7Z591 1439 aa17.19■□□□□ 0.34
MSH6-210ENST00000540021 CANXP27824 592 aaKnown RBP17.18■□□□□ 0.34
MSH6-210ENST00000540021 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.18■□□□□ 0.34
MSH6-210ENST00000540021 PKD2Q13563 968 aa17.18■□□□□ 0.34
MSH6-210ENST00000540021 CNTLNQ9NXG0 1405 aa17.18■□□□□ 0.34
MSH6-210ENST00000540021 EXOC6Q8TAG9 804 aa17.17■□□□□ 0.34
MSH6-210ENST00000540021 DCAF11Q8TEB1 546 aa17.17■□□□□ 0.34
MSH6-210ENST00000540021 NBPF8Q3BBV2 869 aa17.16■□□□□ 0.34
MSH6-210ENST00000540021 RGS3P49796 1198 aa17.15■□□□□ 0.34
MSH6-210ENST00000540021 RCAN3Q9UKA8 241 aa17.15■□□□□ 0.34
MSH6-210ENST00000540021 PLIN1O60240 522 aa17.14■□□□□ 0.33
MSH6-210ENST00000540021 TSPY4P0CV99 314 aa17.14■□□□□ 0.33
MSH6-210ENST00000540021 TSPY10P0CW01 314 aa17.14■□□□□ 0.33
MSH6-210ENST00000540021 ZNF644Q9H582 1327 aaPredicted RBP17.12■□□□□ 0.33
MSH6-210ENST00000540021 SLC4A3P48751 1232 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms