RNA–Protein interactions for RNA: ENST00000538828.1

CLTCL1-205, Transcript of clathrin heavy chain like 1, human

TSL 5

Gene CLTCL1, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLTCL1-205	ENST00000538828	JPH4	Q96JJ6	628 aa		20.94	■□□□□ 0.94
CLTCL1-205	ENST00000538828	PRG4	Q92954	1404 aa	Predicted RBP	20.87	■□□□□ 0.93
CLTCL1-205	ENST00000538828	RAPGEF2	Q9Y4G8	1499 aa		20.87	■□□□□ 0.93
CLTCL1-205	ENST00000538828	ERCC6L2	Q5T890	1561 aa		20.86	■□□□□ 0.93
CLTCL1-205	ENST00000538828	EEA1	Q15075	1411 aa		20.78	■□□□□ 0.92
CLTCL1-205	ENST00000538828	PRX	Q9BXM0	1461 aa		20.78	■□□□□ 0.92
CLTCL1-205	ENST00000538828	IQGAP2	Q13576	1575 aa		20.77	■□□□□ 0.92
CLTCL1-205	ENST00000538828	CARMIL2	Q6F5E8	1435 aa		20.73	■□□□□ 0.91
CLTCL1-205	ENST00000538828	UGGT2	Q9NYU1	1516 aa		20.7	■□□□□ 0.9
CLTCL1-205	ENST00000538828	CSRNP3	Q8WYN3	585 aa		20.69	■□□□□ 0.9
CLTCL1-205	ENST00000538828	TNIK	Q9UKE5	1360 aa		20.67	■□□□□ 0.9
CLTCL1-205	ENST00000538828	CTTNBP2	Q8WZ74	1663 aa		20.64	■□□□□ 0.9
CLTCL1-205	ENST00000538828	PTPRG	P23470	1445 aa		20.64	■□□□□ 0.89
CLTCL1-205	ENST00000538828	CHIC1	Q5VXU3	224 aa		20.63	■□□□□ 0.89
CLTCL1-205	ENST00000538828	DISP1	Q96F81	1524 aa		20.63	■□□□□ 0.89
CLTCL1-205	ENST00000538828	TRH	P20396	242 aa	Predicted RBP	20.62	■□□□□ 0.89
CLTCL1-205	ENST00000538828	GOLGA3	Q08378	1498 aa		20.59	■□□□□ 0.89
CLTCL1-205	ENST00000538828	ADCY10	Q96PN6	1610 aa		20.57	■□□□□ 0.88
CLTCL1-205	ENST00000538828	NPM1	P06748	294 aa	Known RBP eCLIP	20.57	■□□□□ 0.88
CLTCL1-205	ENST00000538828	MAPKBP1	O60336	1514 aa		20.57	■□□□□ 0.88
CLTCL1-205	ENST00000538828	UHRF1BP1L	A0JNW5	1464 aa		20.56	■□□□□ 0.88
CLTCL1-205	ENST00000538828	KIAA0556	O60303	1618 aa		20.56	■□□□□ 0.88
CLTCL1-205	ENST00000538828	UACA	Q9BZF9	1416 aa		20.51	■□□□□ 0.87
CLTCL1-205	ENST00000538828	KIF21B	O75037	1637 aa		20.5	■□□□□ 0.87
CLTCL1-205	ENST00000538828	ABCC2	Q92887	1545 aa		20.5	■□□□□ 0.87
CLTCL1-205	ENST00000538828	ABCC10	Q5T3U5	1492 aa		20.47	■□□□□ 0.87
CLTCL1-205	ENST00000538828	KDM5B	Q9UGL1	1544 aa		20.43	■□□□□ 0.86
CLTCL1-205	ENST00000538828	KIF13A	Q9H1H9	1805 aa		20.42	■□□□□ 0.86
CLTCL1-205	ENST00000538828	FAM9A	Q8IZU1	332 aa	Predicted RBP	20.41	■□□□□ 0.86
CLTCL1-205	ENST00000538828	PLB1	Q6P1J6	1458 aa		20.41	■□□□□ 0.86
CLTCL1-205	ENST00000538828	SAMD9	Q5K651	1589 aa		20.4	■□□□□ 0.86
CLTCL1-205	ENST00000538828	ABCA8	O94911	1581 aa		20.38	■□□□□ 0.85
CLTCL1-205	ENST00000538828	DIP2B	Q9P265	1576 aa		20.38	■□□□□ 0.85
CLTCL1-205	ENST00000538828	TTBK1	Q5TCY1	1321 aa	Predicted RBP	20.35	■□□□□ 0.85
CLTCL1-205	ENST00000538828	FAM69C	Q0P6D2	419 aa		20.35	■□□□□ 0.85
CLTCL1-205	ENST00000538828	ASXL2	Q76L83	1435 aa		20.34	■□□□□ 0.85
CLTCL1-205	ENST00000538828	GLI2	P10070	1586 aa		20.32	■□□□□ 0.84
CLTCL1-205	ENST00000538828	EFCAB5	A4FU69	1503 aa		20.32	■□□□□ 0.84
CLTCL1-205	ENST00000538828	ZCCHC11	Q5TAX3	1644 aa	Known RBP	20.31	■□□□□ 0.84
CLTCL1-205	ENST00000538828	EPRS	P07814	1512 aa	Known RBP	20.24	■□□□□ 0.83
CLTCL1-205	ENST00000538828	WDR7	Q9Y4E6	1490 aa		20.24	■□□□□ 0.83
CLTCL1-205	ENST00000538828	UBTF	P17480	764 aa	Known RBP	20.23	■□□□□ 0.83
CLTCL1-205	ENST00000538828	P3H3	Q8IVL6	736 aa		20.22	■□□□□ 0.83
CLTCL1-205	ENST00000538828	RAPGEF6	Q8TEU7	1601 aa		20.21	■□□□□ 0.83
CLTCL1-205	ENST00000538828	FHOD3	Q2V2M9	1422 aa		20.19	■□□□□ 0.82
CLTCL1-205	ENST00000538828	ATP10B	O94823	1461 aa		20.18	■□□□□ 0.82
CLTCL1-205	ENST00000538828	MAP3K4	Q9Y6R4	1608 aa		20.16	■□□□□ 0.82
CLTCL1-205	ENST00000538828	FMN1	Q68DA7	1419 aa		20.14	■□□□□ 0.81
CLTCL1-205	ENST00000538828	NUP153	P49790	1475 aa	Known RBP	20.13	■□□□□ 0.81
CLTCL1-205	ENST00000538828	TEX14	Q8IWB6	1497 aa		20.13	■□□□□ 0.81
CLTCL1-205	ENST00000538828	ARHGAP35	Q9NRY4	1499 aa		20.12	■□□□□ 0.81
CLTCL1-205	ENST00000538828	PPRC1	Q5VV67	1664 aa	Known RBP	20.12	■□□□□ 0.81
CLTCL1-205	ENST00000538828	TSPOAP1	O95153	1857 aa		20.11	■□□□□ 0.81
CLTCL1-205	ENST00000538828	CFAP43	Q8NDM7	1665 aa		20.1	■□□□□ 0.81
CLTCL1-205	ENST00000538828	MAGI3	Q5TCQ9	1506 aa		20.09	■□□□□ 0.81
CLTCL1-205	ENST00000538828	RANGAP1	P46060	587 aa	Predicted RBP	20.09	■□□□□ 0.81
CLTCL1-205	ENST00000538828	KDM6B	O15054	1643 aa		20.08	■□□□□ 0.8
CLTCL1-205	ENST00000538828	CD109	Q6YHK3	1445 aa		20.06	■□□□□ 0.8
CLTCL1-205	ENST00000538828	ABCA9	Q8IUA7	1624 aa		20.03	■□□□□ 0.8
CLTCL1-205	ENST00000538828	PLEKHD1	A6NEE1	506 aa		20.02	■□□□□ 0.8
CLTCL1-205	ENST00000538828	KCNH8	Q96L42	1107 aa		20.02	■□□□□ 0.8
CLTCL1-205	ENST00000538828	PHLDB1	Q86UU1	1377 aa		20.02	■□□□□ 0.8
CLTCL1-205	ENST00000538828	EHMT2	Q96KQ7	1210 aa		20	■□□□□ 0.79
CLTCL1-205	ENST00000538828	HECW1	Q76N89	1606 aa		20	■□□□□ 0.79
CLTCL1-205	ENST00000538828	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	19.99	■□□□□ 0.79
CLTCL1-205	ENST00000538828	HNRNPUL2	Q1KMD3	747 aa	Known RBP	19.99	■□□□□ 0.79
CLTCL1-205	ENST00000538828	ARID3C	A6NKF2	412 aa		19.97	■□□□□ 0.79
CLTCL1-205	ENST00000538828	CLIP1	P30622	1438 aa		19.95	■□□□□ 0.78
CLTCL1-205	ENST00000538828	CDK11A	Q9UQ88	783 aa	Predicted RBP	19.95	■□□□□ 0.78
CLTCL1-205	ENST00000538828	CASKIN1	Q8WXD9	1431 aa		19.93	■□□□□ 0.78
CLTCL1-205	ENST00000538828	COL17A1	Q9UMD9	1497 aa	Predicted RBP	19.92	■□□□□ 0.78
CLTCL1-205	ENST00000538828	ARAP3	Q8WWN8	1544 aa		19.92	■□□□□ 0.78
CLTCL1-205	ENST00000538828	NEO1	Q92859	1461 aa		19.92	■□□□□ 0.78
CLTCL1-205	ENST00000538828	CDK13	Q14004	1512 aa	Known RBP	19.91	■□□□□ 0.78
CLTCL1-205	ENST00000538828	CCDC18	Q5T9S5	1454 aa		19.9	■□□□□ 0.78
CLTCL1-205	ENST00000538828	FYCO1	Q9BQS8	1478 aa		19.88	■□□□□ 0.77
CLTCL1-205	ENST00000538828	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	19.86	■□□□□ 0.77
CLTCL1-205	ENST00000538828	TRO	Q12816	1431 aa	Predicted RBP	19.85	■□□□□ 0.77
CLTCL1-205	ENST00000538828	PCF11	O94913	1555 aa	Known RBP	19.83	■□□□□ 0.77
CLTCL1-205	ENST00000538828	CFAP74	Q9C0B2	1584 aa		19.83	■□□□□ 0.77
CLTCL1-205	ENST00000538828	ATP1B4	Q9UN42	357 aa	Predicted RBP	19.83	■□□□□ 0.77
CLTCL1-205	ENST00000538828	LRRIQ1	Q96JM4	1722 aa		19.82	■□□□□ 0.76
CLTCL1-205	ENST00000538828	CEP162	Q5TB80	1403 aa		19.81	■□□□□ 0.76
CLTCL1-205	ENST00000538828	PLCH2	O75038	1416 aa		19.8	■□□□□ 0.76
CLTCL1-205	ENST00000538828	TTC37	Q6PGP7	1564 aa		19.79	■□□□□ 0.76
CLTCL1-205	ENST00000538828	KIF14	Q15058	1648 aa		19.79	■□□□□ 0.76
CLTCL1-205	ENST00000538828	FANCA	O15360	1455 aa		19.78	■□□□□ 0.76
CLTCL1-205	ENST00000538828	AKNA	Q7Z591	1439 aa		19.76	■□□□□ 0.75
CLTCL1-205	ENST00000538828	MYO5C	Q9NQX4	1742 aa		19.73	■□□□□ 0.75
CLTCL1-205	ENST00000538828	DENND4B	O75064	1496 aa	Predicted RBP	19.73	■□□□□ 0.75
CLTCL1-205	ENST00000538828	EFCAB2	Q5VUJ9	269 aa		19.72	■□□□□ 0.75
CLTCL1-205	ENST00000538828	AEBP2	Q6ZN18	517 aa	Predicted RBP	19.72	■□□□□ 0.75
CLTCL1-205	ENST00000538828	RICTOR	Q6R327	1708 aa		19.68	■□□□□ 0.74
CLTCL1-205	ENST00000538828	LOC105371045	A0A1W2PR82	267 aa		19.68	■□□□□ 0.74
CLTCL1-205	ENST00000538828	FRMPD1	Q5SYB0	1578 aa		19.68	■□□□□ 0.74
CLTCL1-205	ENST00000538828	MAGI2	Q86UL8	1455 aa		19.67	■□□□□ 0.74
CLTCL1-205	ENST00000538828	ZMYM4	Q5VZL5	1548 aa		19.67	■□□□□ 0.74
CLTCL1-205	ENST00000538828	KDM4F	A0A1W2PPD8	638 aa		19.67	■□□□□ 0.74
CLTCL1-205	ENST00000538828	RAPGEF3	O95398	923 aa		19.67	■□□□□ 0.74
CLTCL1-205	ENST00000538828	ADGRL1	O94910	1474 aa		19.67	■□□□□ 0.74

Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms