RNA–Protein interactions for RNA: ENST00000538494.1

SP140-212, Transcript of SP140 nuclear body protein, humanhuman

TSL 3

Gene SP140, Length 629 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP140-212ENST00000538494 NESP48681 1621 aa11.69□□□□□ -0.54
SP140-212ENST00000538494 CLCN6P51797 869 aa11.68□□□□□ -0.54
SP140-212ENST00000538494 CSRNP3Q8WYN3 585 aa11.68□□□□□ -0.54
SP140-212ENST00000538494 DCBLD2Q96PD2 775 aa11.66□□□□□ -0.54
SP140-212ENST00000538494 ZRANB1Q9UGI0 708 aa11.64□□□□□ -0.55
SP140-212ENST00000538494 CREBZFQ9NS37 354 aa11.61□□□□□ -0.55
SP140-212ENST00000538494 ATAD2BQ9ULI0 1458 aa11.6□□□□□ -0.55
SP140-212ENST00000538494 ZNF579Q8NAF0 562 aaKnown RBP11.6□□□□□ -0.55
SP140-212ENST00000538494 STAG3Q9UJ98 1225 aa11.6□□□□□ -0.55
SP140-212ENST00000538494 HMGXB3Q12766 1538 aa11.58□□□□□ -0.56
SP140-212ENST00000538494 LAMC3Q9Y6N6 1575 aa11.55□□□□□ -0.56
SP140-212ENST00000538494 GALR2O43603 387 aaPredicted RBP11.52□□□□□ -0.57
SP140-212ENST00000538494 SPDYE4A6NLX3 237 aa11.51□□□□□ -0.57
SP140-212ENST00000538494 PDS5BQ9NTI5 1447 aa11.51□□□□□ -0.57
SP140-212ENST00000538494 SMARCA2P51531 1590 aa11.5□□□□□ -0.57
SP140-212ENST00000538494 BAZ1AQ9NRL2 1556 aaPredicted RBP11.5□□□□□ -0.57
SP140-212ENST00000538494 KIF21AQ7Z4S6 1674 aa11.48□□□□□ -0.57
SP140-212ENST00000538494 PAK3O75914 559 aaPredicted RBP11.47□□□□□ -0.57
SP140-212ENST00000538494 PHF12Q96QT6 1004 aa11.45□□□□□ -0.58
SP140-212ENST00000538494 PLSCR2Q9NRY7 297 aa11.44□□□□□ -0.58
SP140-212ENST00000538494 RIMBP3CA6NJZ7 1639 aa11.44□□□□□ -0.58
SP140-212ENST00000538494 RIMBP3BA6NNM3 1639 aa11.44□□□□□ -0.58
SP140-212ENST00000538494 RIMBP3Q9UFD9 1639 aa11.44□□□□□ -0.58
SP140-212ENST00000538494 WDR62O43379 1518 aa11.44□□□□□ -0.58
SP140-212ENST00000538494 MRC2Q9UBG0 1479 aa11.41□□□□□ -0.58
SP140-212ENST00000538494 NPM1P06748 294 aaKnown RBP eCLIP11.41□□□□□ -0.58
SP140-212ENST00000538494 EHMT2Q96KQ7 1210 aa11.41□□□□□ -0.58
SP140-212ENST00000538494 OTUD5Q96G74 571 aa11.39□□□□□ -0.59
SP140-212ENST00000538494 POTEB2H3BUK9 544 aa11.38□□□□□ -0.59
SP140-212ENST00000538494 BAZ1BQ9UIG0 1483 aaKnown RBP11.38□□□□□ -0.59
SP140-212ENST00000538494 PEG3Q9GZU2 1588 aa11.37□□□□□ -0.59
SP140-212ENST00000538494 SMARCA4P51532 1647 aa11.37□□□□□ -0.59
SP140-212ENST00000538494 ARHGEF11O15085 1522 aa11.36□□□□□ -0.59
SP140-212ENST00000538494 MNX1P50219 401 aaPredicted RBP11.35□□□□□ -0.59
SP140-212ENST00000538494 CADPSQ9ULU8 1353 aa11.35□□□□□ -0.59
SP140-212ENST00000538494 PELP1Q8IZL8 1130 aaKnown RBP11.33□□□□□ -0.6
SP140-212ENST00000538494 CYB5RLQ6IPT4 315 aa11.28□□□□□ -0.6
SP140-212ENST00000538494 MS4A3Q96HJ5 214 aa11.27□□□□□ -0.61
SP140-212ENST00000538494 POTEMA6NI47 508 aa11.23□□□□□ -0.61
SP140-212ENST00000538494 ASTLQ6HA08 431 aaPredicted RBP11.23□□□□□ -0.61
SP140-212ENST00000538494 TSPYL2Q9H2G4 693 aaPredicted RBP11.23□□□□□ -0.61
SP140-212ENST00000538494 METRNQ9UJH8 293 aa11.23□□□□□ -0.61
SP140-212ENST00000538494 ATMINO43313 823 aaPredicted RBP11.22□□□□□ -0.61
SP140-212ENST00000538494 ARAP1Q96P48 1450 aa11.21□□□□□ -0.61
SP140-212ENST00000538494 CEP164Q9UPV0 1460 aa11.2□□□□□ -0.62
SP140-212ENST00000538494 SLC39A7Q92504 469 aa11.2□□□□□ -0.62
SP140-212ENST00000538494 C7P10643 843 aa11.19□□□□□ -0.62
SP140-212ENST00000538494 POTEGQ6S5H5 508 aa11.19□□□□□ -0.62
SP140-212ENST00000538494 ILDR1Q86SU0 546 aaPredicted RBP11.17□□□□□ -0.62
SP140-212ENST00000538494 POTEJP0CG39 1038 aa11.16□□□□□ -0.62
SP140-212ENST00000538494 FANCD2Q9BXW9 1451 aa11.16□□□□□ -0.62
SP140-212ENST00000538494 RSF1Q96T23 1441 aaPredicted RBP11.13□□□□□ -0.63
SP140-212ENST00000538494 CCDC61Q9Y6R9 512 aa11.13□□□□□ -0.63
SP140-212ENST00000538494 URB2Q14146 1524 aaKnown RBP11.13□□□□□ -0.63
SP140-212ENST00000538494 ATN1P54259 1190 aaPredicted RBP11.12□□□□□ -0.63
SP140-212ENST00000538494 MAMSTRQ6ZN01 415 aa11.11□□□□□ -0.63
SP140-212ENST00000538494 PROM2Q8N271 834 aa11.1□□□□□ -0.63
SP140-212ENST00000538494 KIF12Q96FN5 646 aa11.1□□□□□ -0.63
SP140-212ENST00000538494 CFTRP13569 1480 aa11.1□□□□□ -0.63
SP140-212ENST00000538494 MROH2BQ7Z745 1585 aa11.09□□□□□ -0.63
SP140-212ENST00000538494 ZNF608Q9ULD9 1512 aaPredicted RBP11.08□□□□□ -0.64
SP140-212ENST00000538494 MIER1Q8N108 512 aa11.06□□□□□ -0.64
SP140-212ENST00000538494 FAM163AQ96GL9 167 aaPredicted RBP11.06□□□□□ -0.64
SP140-212ENST00000538494 IFT140Q96RY7 1462 aa11.06□□□□□ -0.64
SP140-212ENST00000538494 SCUBE2Q9NQ36 999 aa11.05□□□□□ -0.64
SP140-212ENST00000538494 TRPC6Q9Y210 931 aa11.05□□□□□ -0.64
SP140-212ENST00000538494 MAP3K13O43283 966 aa11.04□□□□□ -0.64
SP140-212ENST00000538494 PLEKHG5O94827 1062 aa11.04□□□□□ -0.64
SP140-212ENST00000538494 BMP2KQ9NSY1 1161 aaPredicted RBP11.04□□□□□ -0.64
SP140-212ENST00000538494 PCDH10Q9P2E7 1040 aa11.02□□□□□ -0.65
SP140-212ENST00000538494 POTEFA5A3E0 1075 aa11.01□□□□□ -0.65
SP140-212ENST00000538494 RASEFQ8IZ41 740 aa11□□□□□ -0.65
SP140-212ENST00000538494 TIE1P35590 1138 aa10.98□□□□□ -0.65
SP140-212ENST00000538494 LCE2DQ5TA82 110 aaPredicted RBP10.98□□□□□ -0.65
SP140-212ENST00000538494 CHD1O14646 1710 aa10.97□□□□□ -0.65
SP140-212ENST00000538494 SEC24BO95487 1268 aa10.95□□□□□ -0.66
SP140-212ENST00000538494 EIF4G3O43432 1585 aaKnown RBP10.94□□□□□ -0.66
SP140-212ENST00000538494 TTLL13PA6NNM8 815 aa10.93□□□□□ -0.66
SP140-212ENST00000538494 COLQQ9Y215 455 aaPredicted RBP10.93□□□□□ -0.66
SP140-212ENST00000538494 CLASP1Q7Z460 1538 aa10.93□□□□□ -0.66
SP140-212ENST00000538494 PLCD3Q8N3E9 789 aa10.92□□□□□ -0.66
SP140-212ENST00000538494 AQRO60306 1485 aaKnown RBP eCLIP10.9□□□□□ -0.66
SP140-212ENST00000538494 KDM4FA0A1W2PPD8 638 aa10.89□□□□□ -0.67
SP140-212ENST00000538494 TOPBP1Q92547 1522 aa10.89□□□□□ -0.67
SP140-212ENST00000538494 WIZO95785 1651 aa10.89□□□□□ -0.67
SP140-212ENST00000538494 TRIM35Q9UPQ4 493 aa10.88□□□□□ -0.67
SP140-212ENST00000538494 PCDHB13Q9Y5F0 798 aa10.88□□□□□ -0.67
SP140-212ENST00000538494 TARBP1Q13395 1621 aaKnown RBP10.87□□□□□ -0.67
SP140-212ENST00000538494 ABCC8Q09428 1581 aa10.86□□□□□ -0.67
SP140-212ENST00000538494 SGIP1Q9BQI5 828 aa10.84□□□□□ -0.67
SP140-212ENST00000538494 IER5LQ5T953 404 aa10.83□□□□□ -0.68
SP140-212ENST00000538494 PRDM2Q13029 1718 aa10.83□□□□□ -0.68
SP140-212ENST00000538494 GAPVD1Q14C86 1478 aa10.82□□□□□ -0.68
SP140-212ENST00000538494 NUBP1P53384 320 aa10.82□□□□□ -0.68
SP140-212ENST00000538494 ZBTB47Q9UFB7 747 aaPredicted RBP10.81□□□□□ -0.68
SP140-212ENST00000538494 IFNL1Q8IU54 200 aa10.8□□□□□ -0.68
SP140-212ENST00000538494 SYNJ1O43426 1573 aa10.8□□□□□ -0.68
SP140-212ENST00000538494 SLAIN1Q8ND83 568 aa10.78□□□□□ -0.68
SP140-212ENST00000538494 TMEM106CQ9BVX2 250 aa10.78□□□□□ -0.68
SP140-212ENST00000538494 DNMBPQ6XZF7 1577 aa10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms