RNA–Protein interactions for RNA: ENST00000537002.5

PTPRD-213, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 8,224 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-213ENST00000537002 KIF21BO75037 1637 aa7.29□□□□□ -1.24
PTPRD-213ENST00000537002 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.28□□□□□ -1.24
PTPRD-213ENST00000537002 CUX2O14529 1486 aa7.28□□□□□ -1.24
PTPRD-213ENST00000537002 ZNF326Q5BKZ1 582 aaKnown RBP7.28□□□□□ -1.24
PTPRD-213ENST00000537002 DHX57Q6P158 1386 aaKnown RBP7.27□□□□□ -1.25
PTPRD-213ENST00000537002 PPM1GO15355 546 aaPredicted RBP7.27□□□□□ -1.25
PTPRD-213ENST00000537002 NEFMP07197 916 aa7.27□□□□□ -1.25
PTPRD-213ENST00000537002 LAS1LQ9Y4W2 734 aaKnown RBP7.27□□□□□ -1.25
PTPRD-213ENST00000537002 HIRIP3Q9BW71 556 aaPredicted RBP7.26□□□□□ -1.25
PTPRD-213ENST00000537002 PDS5BQ9NTI5 1447 aa7.24□□□□□ -1.25
PTPRD-213ENST00000537002 EIF4G1Q04637 1599 aaKnown RBP7.24□□□□□ -1.25
PTPRD-213ENST00000537002 RSPH6AQ9H0K4 717 aa7.24□□□□□ -1.25
PTPRD-213ENST00000537002 C11orf95C9JLR9 678 aaPredicted RBP7.23□□□□□ -1.25
PTPRD-213ENST00000537002 CANXP27824 592 aaKnown RBP7.23□□□□□ -1.25
PTPRD-213ENST00000537002 TOP2AP11388 1531 aaKnown RBP7.22□□□□□ -1.25
PTPRD-213ENST00000537002 NPM1P06748 294 aaKnown RBP eCLIP7.22□□□□□ -1.25
PTPRD-213ENST00000537002 RRBP1Q9P2E9 1410 aaKnown RBP7.21□□□□□ -1.26
PTPRD-213ENST00000537002 SMARCA2P51531 1590 aa7.21□□□□□ -1.26
PTPRD-213ENST00000537002 NAP1L5Q96NT1 182 aaPredicted RBP7.2□□□□□ -1.26
PTPRD-213ENST00000537002 SALL2Q9Y467 1007 aaPredicted RBP7.2□□□□□ -1.26
PTPRD-213ENST00000537002 MRS2Q9HD23 443 aa7.2□□□□□ -1.26
PTPRD-213ENST00000537002 ANP32BQ92688 251 aaKnown RBP7.2□□□□□ -1.26
PTPRD-213ENST00000537002 IPO9Q96P70 1041 aaKnown RBP7.2□□□□□ -1.26
PTPRD-213ENST00000537002 SLC4A1APQ9BWU0 796 aaKnown RBP7.19□□□□□ -1.26
PTPRD-213ENST00000537002 TONSLQ96HA7 1378 aa7.19□□□□□ -1.26
PTPRD-213ENST00000537002 DDRGK1Q96HY6 314 aa7.19□□□□□ -1.26
PTPRD-213ENST00000537002 SENP3-EIF4A1A0A087X0R7 540 aa7.18□□□□□ -1.26
PTPRD-213ENST00000537002 CCNB3Q8WWL7 1395 aa7.17□□□□□ -1.26
PTPRD-213ENST00000537002 B4GALNT3Q6L9W6 998 aa7.17□□□□□ -1.26
PTPRD-213ENST00000537002 ERICH3Q5RHP9 1530 aa7.17□□□□□ -1.26
PTPRD-213ENST00000537002 CHMP7Q8WUX9 453 aaPredicted RBP7.16□□□□□ -1.26
PTPRD-213ENST00000537002 CCDC88BA6NC98 1476 aa7.16□□□□□ -1.26
PTPRD-213ENST00000537002 MSH5O43196 834 aa7.16□□□□□ -1.26
PTPRD-213ENST00000537002 MROH2BQ7Z745 1585 aa7.16□□□□□ -1.26
PTPRD-213ENST00000537002 MAP3K1Q13233 1512 aa7.16□□□□□ -1.26
PTPRD-213ENST00000537002 UPF2Q9HAU5 1272 aaKnown RBP7.14□□□□□ -1.27
PTPRD-213ENST00000537002 HSP90AA1P07900 732 aaKnown RBP7.13□□□□□ -1.27
PTPRD-213ENST00000537002 SETD5Q9C0A6 1442 aa7.12□□□□□ -1.27
PTPRD-213ENST00000537002 ZBED9Q6R2W3 1325 aa7.12□□□□□ -1.27
PTPRD-213ENST00000537002 WASHC2AQ641Q2 1341 aa7.12□□□□□ -1.27
PTPRD-213ENST00000537002 MS4A1P11836 297 aa7.12□□□□□ -1.27
PTPRD-213ENST00000537002 SOGA1O94964 1423 aa7.12□□□□□ -1.27
PTPRD-213ENST00000537002 PPP1R15AO75807 674 aaPredicted RBP7.12□□□□□ -1.27
PTPRD-213ENST00000537002 TCERG1O14776 1098 aaKnown RBP7.12□□□□□ -1.27
PTPRD-213ENST00000537002 P3H3Q8IVL6 736 aa7.12□□□□□ -1.27
PTPRD-213ENST00000537002 ANO8Q9HCE9 1232 aaPredicted RBP7.12□□□□□ -1.27
PTPRD-213ENST00000537002 DNAJC5BQ9UF47 199 aa7.12□□□□□ -1.27
PTPRD-213ENST00000537002 ARID4BQ4LE39 1312 aaPredicted RBP7.12□□□□□ -1.27
PTPRD-213ENST00000537002 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.11□□□□□ -1.27
PTPRD-213ENST00000537002 TRIM44Q96DX7 344 aaPredicted RBP7.11□□□□□ -1.27
PTPRD-213ENST00000537002 CADPSQ9ULU8 1353 aa7.11□□□□□ -1.27
PTPRD-213ENST00000537002 WASHC2CQ9Y4E1 1318 aa7.11□□□□□ -1.27
PTPRD-213ENST00000537002 NCAPD3P42695 1498 aa7.1□□□□□ -1.27
PTPRD-213ENST00000537002 ABCC8Q09428 1581 aa7.1□□□□□ -1.27
PTPRD-213ENST00000537002 FHAD1B1AJZ9 1412 aa7.1□□□□□ -1.27
PTPRD-213ENST00000537002 ATAD2BQ9ULI0 1458 aa7.1□□□□□ -1.27
PTPRD-213ENST00000537002 FAM43AQ8N2R8 423 aa7.1□□□□□ -1.27
PTPRD-213ENST00000537002 TMC1Q8TDI8 760 aa7.1□□□□□ -1.27
PTPRD-213ENST00000537002 WIZO95785 1651 aa7.09□□□□□ -1.27
PTPRD-213ENST00000537002 PKNOX2Q96KN3 472 aa7.09□□□□□ -1.27
PTPRD-213ENST00000537002 SLC24A1O60721 1099 aa7.08□□□□□ -1.28
PTPRD-213ENST00000537002 BECN1Q14457 450 aa7.07□□□□□ -1.28
PTPRD-213ENST00000537002 L1TD1Q5T7N2 865 aaKnown RBP7.07□□□□□ -1.28
PTPRD-213ENST00000537002 GSE1Q14687 1217 aa7.07□□□□□ -1.28
PTPRD-213ENST00000537002 RAB3GAP2Q9H2M9 1393 aa7.06□□□□□ -1.28
PTPRD-213ENST00000537002 KCNH8Q96L42 1107 aa7.06□□□□□ -1.28
PTPRD-213ENST00000537002 SIN3AQ96ST3 1273 aa7.06□□□□□ -1.28
PTPRD-213ENST00000537002 ARID3CA6NKF2 412 aa7.05□□□□□ -1.28
PTPRD-213ENST00000537002 VSIG10Q8N0Z9 540 aa7.05□□□□□ -1.28
PTPRD-213ENST00000537002 TNNT2P45379 298 aaPredicted RBP7.05□□□□□ -1.28
PTPRD-213ENST00000537002 OSCARQ8IYS5 282 aa7.05□□□□□ -1.28
PTPRD-213ENST00000537002 TRHP20396 242 aaPredicted RBP7.04□□□□□ -1.28
PTPRD-213ENST00000537002 AMER1Q5JTC6 1135 aaPredicted RBP7.04□□□□□ -1.28
PTPRD-213ENST00000537002 RRP9O43818 475 aaKnown RBP7.04□□□□□ -1.28
PTPRD-213ENST00000537002 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.04□□□□□ -1.28
PTPRD-213ENST00000537002 SYNJ1O43426 1573 aa7.04□□□□□ -1.28
PTPRD-213ENST00000537002 NCLP19338 710 aaKnown RBP7.04□□□□□ -1.28
PTPRD-213ENST00000537002 SMG6Q86US8 1419 aaKnown RBP7.04□□□□□ -1.28
PTPRD-213ENST00000537002 SMARCA4P51532 1647 aa7.04□□□□□ -1.28
PTPRD-213ENST00000537002 EIF4G2P78344 907 aaKnown RBP eCLIP7.03□□□□□ -1.28
PTPRD-213ENST00000537002 RGS3P49796 1198 aa7.03□□□□□ -1.28
PTPRD-213ENST00000537002 ISY1Q9ULR0 285 aaKnown RBP7.03□□□□□ -1.28
PTPRD-213ENST00000537002 KTN1Q86UP2 1357 aaKnown RBP7.03□□□□□ -1.28
PTPRD-213ENST00000537002 ARID3AQ99856 593 aa7.03□□□□□ -1.28
PTPRD-213ENST00000537002 CCDC18Q5T9S5 1454 aa7.02□□□□□ -1.29
PTPRD-213ENST00000537002 CHIC2Q9UKJ5 165 aa7.02□□□□□ -1.29
PTPRD-213ENST00000537002 MAPKBP1O60336 1514 aa7.02□□□□□ -1.29
PTPRD-213ENST00000537002 CC2D2AQ9P2K1 1620 aa7.01□□□□□ -1.29
PTPRD-213ENST00000537002 NUDCQ9Y266 331 aa7□□□□□ -1.29
PTPRD-213ENST00000537002 PNNQ9H307 717 aaKnown RBP7□□□□□ -1.29
PTPRD-213ENST00000537002 CNTLNQ9NXG0 1405 aa7□□□□□ -1.29
PTPRD-213ENST00000537002 PDE3BQ13370 1112 aa7□□□□□ -1.29
PTPRD-213ENST00000537002 PRXQ9BXM0 1461 aa7□□□□□ -1.29
PTPRD-213ENST00000537002 KIF27Q86VH2 1401 aa7□□□□□ -1.29
PTPRD-213ENST00000537002 RAPGEF2Q9Y4G8 1499 aa6.99□□□□□ -1.29
PTPRD-213ENST00000537002 ROCK2O75116 1388 aaKnown RBP6.99□□□□□ -1.29
PTPRD-213ENST00000537002 WDR97A6NE52 1622 aa6.99□□□□□ -1.29
PTPRD-213ENST00000537002 IL27Q8NEV9 243 aa6.99□□□□□ -1.29
PTPRD-213ENST00000537002 RNF123Q5XPI4 1314 aa6.99□□□□□ -1.29
PTPRD-213ENST00000537002 DNTTIP2Q5QJE6 756 aaKnown RBP6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms