RNA–Protein interactions for RNA: ENST00000535452.5

CLSTN3-205, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-205ENST00000535452 CUL7Q14999 1698 aa22.8■■□□□ 1.24
CLSTN3-205ENST00000535452 RUSC2Q8N2Y8 1516 aa22.76■■□□□ 1.23
CLSTN3-205ENST00000535452 IGF1RP08069 1367 aa22.75■■□□□ 1.23
CLSTN3-205ENST00000535452 KIAA0586Q9BVV6 1533 aa22.73■■□□□ 1.23
CLSTN3-205ENST00000535452 AEBP2Q6ZN18 517 aaPredicted RBP22.73■■□□□ 1.23
CLSTN3-205ENST00000535452 CARMIL1Q5VZK9 1371 aa22.7■■□□□ 1.22
CLSTN3-205ENST00000535452 CARMIL2Q6F5E8 1435 aa22.66■■□□□ 1.22
CLSTN3-205ENST00000535452 TTBK1Q5TCY1 1321 aaPredicted RBP22.61■■□□□ 1.21
CLSTN3-205ENST00000535452 FAM69CQ0P6D2 419 aa22.61■■□□□ 1.21
CLSTN3-205ENST00000535452 PTPRGP23470 1445 aa22.58■■□□□ 1.21
CLSTN3-205ENST00000535452 MAPKBP1O60336 1514 aa22.54■■□□□ 1.2
CLSTN3-205ENST00000535452 TNIKQ9UKE5 1360 aa22.53■■□□□ 1.2
CLSTN3-205ENST00000535452 IQGAP2Q13576 1575 aa22.53■■□□□ 1.2
CLSTN3-205ENST00000535452 ABCC10Q5T3U5 1492 aa22.52■■□□□ 1.2
CLSTN3-205ENST00000535452 RAPGEF2Q9Y4G8 1499 aa22.5■■□□□ 1.19
CLSTN3-205ENST00000535452 FAM9AQ8IZU1 332 aaPredicted RBP22.5■■□□□ 1.19
CLSTN3-205ENST00000535452 ADCY10Q96PN6 1610 aa22.49■■□□□ 1.19
CLSTN3-205ENST00000535452 KIF13AQ9H1H9 1805 aa22.47■■□□□ 1.19
CLSTN3-205ENST00000535452 DIP2BQ9P265 1576 aa22.42■■□□□ 1.18
CLSTN3-205ENST00000535452 ABCC2Q92887 1545 aa22.39■■□□□ 1.17
CLSTN3-205ENST00000535452 UACAQ9BZF9 1416 aa22.38■■□□□ 1.17
CLSTN3-205ENST00000535452 PLB1Q6P1J6 1458 aa22.37■■□□□ 1.17
CLSTN3-205ENST00000535452 UGGT2Q9NYU1 1516 aa22.33■■□□□ 1.17
CLSTN3-205ENST00000535452 UHRF1BP1LA0JNW5 1464 aa22.33■■□□□ 1.16
CLSTN3-205ENST00000535452 GOLGA3Q08378 1498 aa22.33■■□□□ 1.16
CLSTN3-205ENST00000535452 ASXL2Q76L83 1435 aa22.31■■□□□ 1.16
CLSTN3-205ENST00000535452 KDM6BO15054 1643 aa22.31■■□□□ 1.16
CLSTN3-205ENST00000535452 DISP1Q96F81 1524 aa22.3■■□□□ 1.16
CLSTN3-205ENST00000535452 TSPOAP1O95153 1857 aa22.28■■□□□ 1.16
CLSTN3-205ENST00000535452 KIAA0556O60303 1618 aa22.28■■□□□ 1.16
CLSTN3-205ENST00000535452 CTTNBP2Q8WZ74 1663 aa22.25■■□□□ 1.15
CLSTN3-205ENST00000535452 KDM5BQ9UGL1 1544 aa22.21■■□□□ 1.15
CLSTN3-205ENST00000535452 GLI2P10070 1586 aa22.21■■□□□ 1.15
CLSTN3-205ENST00000535452 TEX14Q8IWB6 1497 aa22.2■■□□□ 1.14
CLSTN3-205ENST00000535452 PRXQ9BXM0 1461 aa22.16■■□□□ 1.14
CLSTN3-205ENST00000535452 ZCCHC11Q5TAX3 1644 aaKnown RBP22.16■■□□□ 1.14
CLSTN3-205ENST00000535452 CSRNP3Q8WYN3 585 aa22.15■■□□□ 1.14
CLSTN3-205ENST00000535452 EPRSP07814 1512 aaKnown RBP22.15■■□□□ 1.14
CLSTN3-205ENST00000535452 WDR7Q9Y4E6 1490 aa22.13■■□□□ 1.13
CLSTN3-205ENST00000535452 EEA1Q15075 1411 aa22.12■■□□□ 1.13
CLSTN3-205ENST00000535452 KCNH8Q96L42 1107 aa22.1■■□□□ 1.13
CLSTN3-205ENST00000535452 P3H3Q8IVL6 736 aa22.07■■□□□ 1.12
CLSTN3-205ENST00000535452 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.06■■□□□ 1.12
CLSTN3-205ENST00000535452 HNRNPUL2Q1KMD3 747 aaKnown RBP22.06■■□□□ 1.12
CLSTN3-205ENST00000535452 MAP3K4Q9Y6R4 1608 aa22.05■■□□□ 1.12
CLSTN3-205ENST00000535452 ABCA8O94911 1581 aa22.03■■□□□ 1.12
CLSTN3-205ENST00000535452 CD109Q6YHK3 1445 aa22.02■■□□□ 1.12
CLSTN3-205ENST00000535452 RANGAP1P46060 587 aaPredicted RBP22.01■■□□□ 1.11
CLSTN3-205ENST00000535452 ARID3CA6NKF2 412 aa21.99■■□□□ 1.11
CLSTN3-205ENST00000535452 PPRC1Q5VV67 1664 aaKnown RBP21.98■■□□□ 1.11
CLSTN3-205ENST00000535452 CFAP43Q8NDM7 1665 aa21.97■■□□□ 1.11
CLSTN3-205ENST00000535452 KDM4FA0A1W2PPD8 638 aa21.96■■□□□ 1.11
CLSTN3-205ENST00000535452 MAGI3Q5TCQ9 1506 aa21.94■■□□□ 1.1
CLSTN3-205ENST00000535452 SAMD9Q5K651 1589 aa21.88■■□□□ 1.09
CLSTN3-205ENST00000535452 ADGRL1O94910 1474 aa21.88■■□□□ 1.09
CLSTN3-205ENST00000535452 ATP10BO94823 1461 aa21.87■■□□□ 1.09
CLSTN3-205ENST00000535452 RAPGEF6Q8TEU7 1601 aa21.87■■□□□ 1.09
CLSTN3-205ENST00000535452 PHLDB1Q86UU1 1377 aa21.87■■□□□ 1.09
CLSTN3-205ENST00000535452 COL17A1Q9UMD9 1497 aaPredicted RBP21.86■■□□□ 1.09
CLSTN3-205ENST00000535452 PLEKHD1A6NEE1 506 aa21.85■■□□□ 1.09
CLSTN3-205ENST00000535452 UBTFP17480 764 aaKnown RBP21.85■■□□□ 1.09
CLSTN3-205ENST00000535452 FHOD3Q2V2M9 1422 aa21.81■■□□□ 1.08
CLSTN3-205ENST00000535452 EFCAB5A4FU69 1503 aa21.81■■□□□ 1.08
CLSTN3-205ENST00000535452 KIF21BO75037 1637 aa21.8■■□□□ 1.08
CLSTN3-205ENST00000535452 EHMT2Q96KQ7 1210 aa21.77■■□□□ 1.08
CLSTN3-205ENST00000535452 ATP1B4Q9UN42 357 aaPredicted RBP21.76■■□□□ 1.07
CLSTN3-205ENST00000535452 ABCA9Q8IUA7 1624 aa21.76■■□□□ 1.07
CLSTN3-205ENST00000535452 ARAP3Q8WWN8 1544 aa21.75■■□□□ 1.07
CLSTN3-205ENST00000535452 NEO1Q92859 1461 aa21.74■■□□□ 1.07
CLSTN3-205ENST00000535452 NUP153P49790 1475 aaKnown RBP21.73■■□□□ 1.07
CLSTN3-205ENST00000535452 CDK11AQ9UQ88 783 aaPredicted RBP21.72■■□□□ 1.07
CLSTN3-205ENST00000535452 ARID4BQ4LE39 1312 aaPredicted RBP21.69■■□□□ 1.06
CLSTN3-205ENST00000535452 FMN1Q68DA7 1419 aa21.69■■□□□ 1.06
CLSTN3-205ENST00000535452 CHIC1Q5VXU3 224 aa21.67■■□□□ 1.06
CLSTN3-205ENST00000535452 RAPGEF3O95398 923 aa21.65■■□□□ 1.06
CLSTN3-205ENST00000535452 CFAP74Q9C0B2 1584 aa21.65■■□□□ 1.06
CLSTN3-205ENST00000535452 DENND4BO75064 1496 aaPredicted RBP21.61■■□□□ 1.05
CLSTN3-205ENST00000535452 FANCAO15360 1455 aa21.6■■□□□ 1.05
CLSTN3-205ENST00000535452 HECW1Q76N89 1606 aa21.59■■□□□ 1.05
CLSTN3-205ENST00000535452 AKNAQ7Z591 1439 aa21.57■■□□□ 1.04
CLSTN3-205ENST00000535452 CLIP1P30622 1438 aa21.55■■□□□ 1.04
CLSTN3-205ENST00000535452 POGZQ7Z3K3 1410 aa21.55■■□□□ 1.04
CLSTN3-205ENST00000535452 CDK13Q14004 1512 aaKnown RBP21.54■■□□□ 1.04
CLSTN3-205ENST00000535452 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.54■■□□□ 1.04
CLSTN3-205ENST00000535452 HECW2Q9P2P5 1572 aa21.53■■□□□ 1.04
CLSTN3-205ENST00000535452 EFCAB2Q5VUJ9 269 aa21.52■■□□□ 1.04
CLSTN3-205ENST00000535452 MYT1LQ9UL68 1186 aa21.51■■□□□ 1.03
CLSTN3-205ENST00000535452 ARHGAP35Q9NRY4 1499 aa21.51■■□□□ 1.03
CLSTN3-205ENST00000535452 TTC37Q6PGP7 1564 aa21.48■■□□□ 1.03
CLSTN3-205ENST00000535452 PLCH2O75038 1416 aa21.47■■□□□ 1.03
CLSTN3-205ENST00000535452 MAGI2Q86UL8 1455 aa21.46■■□□□ 1.03
CLSTN3-205ENST00000535452 ARHGEF40Q8TER5 1519 aa21.46■■□□□ 1.03
CLSTN3-205ENST00000535452 KIF14Q15058 1648 aa21.46■■□□□ 1.03
CLSTN3-205ENST00000535452 PTPRMP28827 1452 aa21.45■■□□□ 1.03
CLSTN3-205ENST00000535452 SCAPERQ9BY12 1400 aa21.45■■□□□ 1.02
CLSTN3-205ENST00000535452 ZFYVE16Q7Z3T8 1539 aa21.45■■□□□ 1.02
CLSTN3-205ENST00000535452 FRMPD1Q5SYB0 1578 aa21.44■■□□□ 1.02
CLSTN3-205ENST00000535452 TROQ12816 1431 aaPredicted RBP21.43■■□□□ 1.02
CLSTN3-205ENST00000535452 CCDC18Q5T9S5 1454 aa21.42■■□□□ 1.02
CLSTN3-205ENST00000535452 RICTORQ6R327 1708 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 118 ms