RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 KIAA0586Q9BVV6 1533 aa21.94■■□□□ 1.1
VPS28-216ENST00000533806 JPH4Q96JJ6 628 aa21.93■■□□□ 1.1
VPS28-216ENST00000533806 RAPGEF2Q9Y4G8 1499 aa21.91■■□□□ 1.1
VPS28-216ENST00000533806 ERCC6L2Q5T890 1561 aa21.91■■□□□ 1.1
VPS28-216ENST00000533806 PRXQ9BXM0 1461 aa21.89■■□□□ 1.09
VPS28-216ENST00000533806 PRG4Q92954 1404 aaPredicted RBP21.87■■□□□ 1.09
VPS28-216ENST00000533806 CSRNP3Q8WYN3 585 aa21.84■■□□□ 1.09
VPS28-216ENST00000533806 EEA1Q15075 1411 aa21.82■■□□□ 1.08
VPS28-216ENST00000533806 IQGAP2Q13576 1575 aa21.74■■□□□ 1.07
VPS28-216ENST00000533806 UGGT2Q9NYU1 1516 aa21.69■■□□□ 1.06
VPS28-216ENST00000533806 FAM9AQ8IZU1 332 aaPredicted RBP21.68■■□□□ 1.06
VPS28-216ENST00000533806 DISP1Q96F81 1524 aa21.67■■□□□ 1.06
VPS28-216ENST00000533806 CARMIL2Q6F5E8 1435 aa21.64■■□□□ 1.06
VPS28-216ENST00000533806 TNIKQ9UKE5 1360 aa21.61■■□□□ 1.05
VPS28-216ENST00000533806 PTPRGP23470 1445 aa21.61■■□□□ 1.05
VPS28-216ENST00000533806 CTTNBP2Q8WZ74 1663 aa21.6■■□□□ 1.05
VPS28-216ENST00000533806 KIF21BO75037 1637 aa21.58■■□□□ 1.04
VPS28-216ENST00000533806 KIAA0556O60303 1618 aa21.54■■□□□ 1.04
VPS28-216ENST00000533806 GOLGA3Q08378 1498 aa21.52■■□□□ 1.03
VPS28-216ENST00000533806 ADCY10Q96PN6 1610 aa21.51■■□□□ 1.03
VPS28-216ENST00000533806 UHRF1BP1LA0JNW5 1464 aa21.47■■□□□ 1.03
VPS28-216ENST00000533806 TRHP20396 242 aaPredicted RBP21.46■■□□□ 1.03
VPS28-216ENST00000533806 TTBK1Q5TCY1 1321 aaPredicted RBP21.46■■□□□ 1.03
VPS28-216ENST00000533806 UACAQ9BZF9 1416 aa21.46■■□□□ 1.03
VPS28-216ENST00000533806 NPM1P06748 294 aaKnown RBP eCLIP21.42■■□□□ 1.02
VPS28-216ENST00000533806 SAMD9Q5K651 1589 aa21.42■■□□□ 1.02
VPS28-216ENST00000533806 ABCC2Q92887 1545 aa21.41■■□□□ 1.02
VPS28-216ENST00000533806 MAPKBP1O60336 1514 aa21.4■■□□□ 1.02
VPS28-216ENST00000533806 P3H3Q8IVL6 736 aa21.38■■□□□ 1.01
VPS28-216ENST00000533806 PLB1Q6P1J6 1458 aa21.38■■□□□ 1.01
VPS28-216ENST00000533806 UBTFP17480 764 aaKnown RBP21.37■■□□□ 1.01
VPS28-216ENST00000533806 KDM5BQ9UGL1 1544 aa21.36■■□□□ 1.01
VPS28-216ENST00000533806 EHMT2Q96KQ7 1210 aa21.36■■□□□ 1.01
VPS28-216ENST00000533806 ABCA8O94911 1581 aa21.35■■□□□ 1.01
VPS28-216ENST00000533806 ABCC10Q5T3U5 1492 aa21.32■■□□□ 1
VPS28-216ENST00000533806 RANGAP1P46060 587 aaPredicted RBP21.31■■□□□ 1
VPS28-216ENST00000533806 EFCAB5A4FU69 1503 aa21.29■■□□□ 1
VPS28-216ENST00000533806 FHOD3Q2V2M9 1422 aa21.29■■□□□ 1
VPS28-216ENST00000533806 ASXL2Q76L83 1435 aa21.28■■□□□ 1
VPS28-216ENST00000533806 FAM69CQ0P6D2 419 aa21.25■□□□□ 0.99
VPS28-216ENST00000533806 DIP2BQ9P265 1576 aa21.24■□□□□ 0.99
VPS28-216ENST00000533806 ARHGAP35Q9NRY4 1499 aa21.24■□□□□ 0.99
VPS28-216ENST00000533806 ZCCHC11Q5TAX3 1644 aaKnown RBP21.23■□□□□ 0.99
VPS28-216ENST00000533806 KIF13AQ9H1H9 1805 aa21.23■□□□□ 0.99
VPS28-216ENST00000533806 ATP10BO94823 1461 aa21.2■□□□□ 0.98
VPS28-216ENST00000533806 NUP153P49790 1475 aaKnown RBP21.17■□□□□ 0.98
VPS28-216ENST00000533806 RAPGEF6Q8TEU7 1601 aa21.17■□□□□ 0.98
VPS28-216ENST00000533806 GLI2P10070 1586 aa21.16■□□□□ 0.98
VPS28-216ENST00000533806 EPRSP07814 1512 aaKnown RBP21.16■□□□□ 0.98
VPS28-216ENST00000533806 WDR7Q9Y4E6 1490 aa21.15■□□□□ 0.98
VPS28-216ENST00000533806 FMN1Q68DA7 1419 aa21.12■□□□□ 0.97
VPS28-216ENST00000533806 ARID3CA6NKF2 412 aa21.11■□□□□ 0.97
VPS28-216ENST00000533806 CLIP1P30622 1438 aa21.07■□□□□ 0.96
VPS28-216ENST00000533806 LOC105371045A0A1W2PR82 267 aa21.05■□□□□ 0.96
VPS28-216ENST00000533806 KCNH8Q96L42 1107 aa21.04■□□□□ 0.96
VPS28-216ENST00000533806 MAP3K4Q9Y6R4 1608 aa21.03■□□□□ 0.96
VPS28-216ENST00000533806 PPRC1Q5VV67 1664 aaKnown RBP21■□□□□ 0.95
VPS28-216ENST00000533806 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.99■□□□□ 0.95
VPS28-216ENST00000533806 HNRNPUL2Q1KMD3 747 aaKnown RBP20.99■□□□□ 0.95
VPS28-216ENST00000533806 CASKIN1Q8WXD9 1431 aa20.98■□□□□ 0.95
VPS28-216ENST00000533806 PLEKHD1A6NEE1 506 aa20.98■□□□□ 0.95
VPS28-216ENST00000533806 CDK13Q14004 1512 aaKnown RBP20.98■□□□□ 0.95
VPS28-216ENST00000533806 CEP162Q5TB80 1403 aa20.97■□□□□ 0.95
VPS28-216ENST00000533806 HECW1Q76N89 1606 aa20.96■□□□□ 0.95
VPS28-216ENST00000533806 CD109Q6YHK3 1445 aa20.96■□□□□ 0.95
VPS28-216ENST00000533806 MAGI3Q5TCQ9 1506 aa20.95■□□□□ 0.94
VPS28-216ENST00000533806 TSPOAP1O95153 1857 aa20.94■□□□□ 0.94
VPS28-216ENST00000533806 ATP1B4Q9UN42 357 aaPredicted RBP20.93■□□□□ 0.94
VPS28-216ENST00000533806 CFAP43Q8NDM7 1665 aa20.93■□□□□ 0.94
VPS28-216ENST00000533806 TEX14Q8IWB6 1497 aa20.92■□□□□ 0.94
VPS28-216ENST00000533806 ABCA9Q8IUA7 1624 aa20.92■□□□□ 0.94
VPS28-216ENST00000533806 PCF11O94913 1555 aaKnown RBP20.91■□□□□ 0.94
VPS28-216ENST00000533806 FYCO1Q9BQS8 1478 aa20.9■□□□□ 0.94
VPS28-216ENST00000533806 COL17A1Q9UMD9 1497 aaPredicted RBP20.89■□□□□ 0.94
VPS28-216ENST00000533806 CDK11AQ9UQ88 783 aaPredicted RBP20.87■□□□□ 0.93
VPS28-216ENST00000533806 LRRIQ1Q96JM4 1722 aa20.87■□□□□ 0.93
VPS28-216ENST00000533806 KDM6BO15054 1643 aa20.86■□□□□ 0.93
VPS28-216ENST00000533806 CCDC18Q5T9S5 1454 aa20.85■□□□□ 0.93
VPS28-216ENST00000533806 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.84■□□□□ 0.937e-7■■□□□ 14.3
VPS28-216ENST00000533806 TROQ12816 1431 aaPredicted RBP20.83■□□□□ 0.93
VPS28-216ENST00000533806 PHLDB1Q86UU1 1377 aa20.8■□□□□ 0.92
VPS28-216ENST00000533806 ARAP3Q8WWN8 1544 aa20.78■□□□□ 0.92
VPS28-216ENST00000533806 TTC37Q6PGP7 1564 aa20.78■□□□□ 0.92
VPS28-216ENST00000533806 NEO1Q92859 1461 aa20.77■□□□□ 0.92
VPS28-216ENST00000533806 PLCH2O75038 1416 aa20.76■□□□□ 0.91
VPS28-216ENST00000533806 KIF14Q15058 1648 aa20.74■□□□□ 0.91
VPS28-216ENST00000533806 VPS8Q8N3P4 1428 aa20.73■□□□□ 0.91
VPS28-216ENST00000533806 FANCAO15360 1455 aa20.71■□□□□ 0.91
VPS28-216ENST00000533806 AKNAQ7Z591 1439 aa20.7■□□□□ 0.9
VPS28-216ENST00000533806 RAPGEF3O95398 923 aa20.66■□□□□ 0.9
VPS28-216ENST00000533806 EFCAB2Q5VUJ9 269 aa20.65■□□□□ 0.9
VPS28-216ENST00000533806 CFAP74Q9C0B2 1584 aa20.63■□□□□ 0.89
VPS28-216ENST00000533806 MTUS2Q5JR59 1369 aa20.62■□□□□ 0.89
VPS28-216ENST00000533806 FRMPD1Q5SYB0 1578 aa20.61■□□□□ 0.89
VPS28-216ENST00000533806 DENND4BO75064 1496 aaPredicted RBP20.61■□□□□ 0.89
VPS28-216ENST00000533806 MYO5CQ9NQX4 1742 aa20.61■□□□□ 0.89
VPS28-216ENST00000533806 MAP3K1Q13233 1512 aa20.59■□□□□ 0.89
VPS28-216ENST00000533806 GPATCH8Q9UKJ3 1502 aaKnown RBP20.59■□□□□ 0.89
VPS28-216ENST00000533806 SCAPERQ9BY12 1400 aa20.59■□□□□ 0.89
VPS28-216ENST00000533806 TIAM1Q13009 1591 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms