RNA–Protein interactions for RNA: ENST00000533476.5

UBXN1-215, Transcript of UBX domain protein 1, human

TSL 2

Gene UBXN1, Length 1,912 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBXN1-215	ENST00000533476	FHAD1	B1AJZ9	1412 aa		28.92	■■■□□ 2.22
UBXN1-215	ENST00000533476	CFAP43	Q8NDM7	1665 aa		28.86	■■■□□ 2.21
UBXN1-215	ENST00000533476	GAPVD1	Q14C86	1478 aa		28.86	■■■□□ 2.21
UBXN1-215	ENST00000533476	PCF11	O94913	1555 aa	Known RBP	28.85	■■■□□ 2.21
UBXN1-215	ENST00000533476	TARBP1	Q13395	1621 aa	Known RBP	28.83	■■■□□ 2.21
UBXN1-215	ENST00000533476	TDRD9	Q8NDG6	1382 aa	Known RBP	28.81	■■■□□ 2.2
UBXN1-215	ENST00000533476	CCNB3	Q8WWL7	1395 aa		28.81	■■■□□ 2.2
UBXN1-215	ENST00000533476	LRRC9	Q6ZRR7	1453 aa		28.8	■■■□□ 2.2
UBXN1-215	ENST00000533476	AQR	O60306	1485 aa	Known RBP eCLIP	28.78	■■■□□ 2.2	8e-8	■■■■□ 24
UBXN1-215	ENST00000533476	FYCO1	Q9BQS8	1478 aa		28.78	■■■□□ 2.2
UBXN1-215	ENST00000533476	FHOD3	Q2V2M9	1422 aa		28.77	■■■□□ 2.2
UBXN1-215	ENST00000533476	CASKIN1	Q8WXD9	1431 aa		28.72	■■■□□ 2.19
UBXN1-215	ENST00000533476	MRC2	Q9UBG0	1479 aa		28.71	■■■□□ 2.19
UBXN1-215	ENST00000533476	CLSPN	Q9HAW4	1339 aa		28.71	■■■□□ 2.19
UBXN1-215	ENST00000533476	SAMD9	Q5K651	1589 aa		28.7	■■■□□ 2.19
UBXN1-215	ENST00000533476	P3H3	Q8IVL6	736 aa		28.68	■■■□□ 2.18
UBXN1-215	ENST00000533476	THOC2	Q8NI27	1593 aa	Known RBP	28.67	■■■□□ 2.18
UBXN1-215	ENST00000533476	DHX57	Q6P158	1386 aa	Known RBP	28.66	■■■□□ 2.18
UBXN1-215	ENST00000533476	PBRM1	Q86U86	1689 aa		28.66	■■■□□ 2.18
UBXN1-215	ENST00000533476	FMN1	Q68DA7	1419 aa		28.66	■■■□□ 2.18
UBXN1-215	ENST00000533476	SNAPC4	Q5SXM2	1469 aa		28.61	■■■□□ 2.17
UBXN1-215	ENST00000533476	PHLDB1	Q86UU1	1377 aa		28.6	■■■□□ 2.17
UBXN1-215	ENST00000533476	ZNF316	A6NFI3	1004 aa	Predicted RBP	28.59	■■■□□ 2.17
UBXN1-215	ENST00000533476	DIEXF	Q68CQ4	756 aa	Known RBP	28.59	■■■□□ 2.17
UBXN1-215	ENST00000533476	ADAMTS12	P58397	1594 aa		28.55	■■■□□ 2.16
UBXN1-215	ENST00000533476	WDR62	O43379	1518 aa		28.53	■■■□□ 2.16
UBXN1-215	ENST00000533476	ATP1B4	Q9UN42	357 aa	Predicted RBP	28.49	■■■□□ 2.15
UBXN1-215	ENST00000533476	GRIN2B	Q13224	1484 aa		28.48	■■■□□ 2.15
UBXN1-215	ENST00000533476	IFT140	Q96RY7	1462 aa		28.48	■■■□□ 2.15
UBXN1-215	ENST00000533476	LRRIQ1	Q96JM4	1722 aa		28.44	■■■□□ 2.14
UBXN1-215	ENST00000533476	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	28.44	■■■□□ 2.14
UBXN1-215	ENST00000533476	ITGAE	P38570	1179 aa		28.43	■■■□□ 2.14
UBXN1-215	ENST00000533476	IQGAP2	Q13576	1575 aa		28.43	■■■□□ 2.14
UBXN1-215	ENST00000533476	RAB3GAP2	Q9H2M9	1393 aa		28.42	■■■□□ 2.14
UBXN1-215	ENST00000533476	SETD5	Q9C0A6	1442 aa		28.4	■■■□□ 2.14
UBXN1-215	ENST00000533476	FAM50A	Q14320	339 aa	Known RBP	28.35	■■■□□ 2.13
UBXN1-215	ENST00000533476	ZNF608	Q9ULD9	1512 aa	Predicted RBP	28.35	■■■□□ 2.13
UBXN1-215	ENST00000533476	MTUS2	Q5JR59	1369 aa		28.34	■■■□□ 2.13
UBXN1-215	ENST00000533476	FGD6	Q6ZV73	1430 aa		28.33	■■■□□ 2.13
UBXN1-215	ENST00000533476	EHBP1L1	Q8N3D4	1523 aa		28.32	■■■□□ 2.12
UBXN1-215	ENST00000533476	CCDC18	Q5T9S5	1454 aa		28.31	■■■□□ 2.12
UBXN1-215	ENST00000533476	MAPKBP1	O60336	1514 aa		28.3	■■■□□ 2.12
UBXN1-215	ENST00000533476	UGGT2	Q9NYU1	1516 aa		28.29	■■■□□ 2.12
UBXN1-215	ENST00000533476	HECW1	Q76N89	1606 aa		28.29	■■■□□ 2.12
UBXN1-215	ENST00000533476	SUPT6H	Q7KZ85	1726 aa	Known RBP	28.29	■■■□□ 2.12
UBXN1-215	ENST00000533476	EIF4G3	O43432	1585 aa	Known RBP	28.27	■■■□□ 2.12
UBXN1-215	ENST00000533476	NCOA2	Q15596	1464 aa		28.25	■■■□□ 2.11
UBXN1-215	ENST00000533476	SCAF1	Q9H7N4	1312 aa	Known RBP	28.25	■■■□□ 2.11
UBXN1-215	ENST00000533476	MYOM3	Q5VTT5	1437 aa		28.21	■■■□□ 2.11
UBXN1-215	ENST00000533476	ARHGEF11	O15085	1522 aa		28.21	■■■□□ 2.11
UBXN1-215	ENST00000533476	KIAA0586	Q9BVV6	1533 aa		28.2	■■■□□ 2.1
UBXN1-215	ENST00000533476	MAGI3	Q5TCQ9	1506 aa		28.19	■■■□□ 2.1
UBXN1-215	ENST00000533476	GRIN2A	Q12879	1464 aa		28.17	■■■□□ 2.1
UBXN1-215	ENST00000533476	ACIN1	Q9UKV3	1341 aa	Known RBP	28.16	■■■□□ 2.1
UBXN1-215	ENST00000533476	EPRS	P07814	1512 aa	Known RBP	28.15	■■■□□ 2.1
UBXN1-215	ENST00000533476	KIAA0556	O60303	1618 aa		28.14	■■■□□ 2.09
UBXN1-215	ENST00000533476	MAGI1	Q96QZ7	1491 aa	Predicted RBP	28.13	■■■□□ 2.09
UBXN1-215	ENST00000533476	PTPN23	Q9H3S7	1636 aa		28.1	■■■□□ 2.09
UBXN1-215	ENST00000533476	DISP1	Q96F81	1524 aa		28.1	■■■□□ 2.09
UBXN1-215	ENST00000533476	HFM1	A2PYH4	1435 aa		28.08	■■■□□ 2.09
UBXN1-215	ENST00000533476	CENPB	P07199	599 aa	Predicted RBP	28.08	■■■□□ 2.09
UBXN1-215	ENST00000533476	PTPRK	Q15262	1439 aa		28.06	■■■□□ 2.08
UBXN1-215	ENST00000533476	TCOF1	Q13428	1488 aa	Known RBP	28.06	■■■□□ 2.08
UBXN1-215	ENST00000533476	CDK13	Q14004	1512 aa	Known RBP	28.05	■■■□□ 2.08
UBXN1-215	ENST00000533476	SYNJ2	O15056	1496 aa		28.03	■■■□□ 2.08
UBXN1-215	ENST00000533476	NEUROD1	Q13562	356 aa		28	■■■□□ 2.07
UBXN1-215	ENST00000533476	MIER1	Q8N108	512 aa		28	■■■□□ 2.07
UBXN1-215	ENST00000533476	CEP170	Q5SW79	1584 aa		27.98	■■■□□ 2.07
UBXN1-215	ENST00000533476	RAPGEF6	Q8TEU7	1601 aa		27.97	■■■□□ 2.07
UBXN1-215	ENST00000533476	NAIP	Q13075	1403 aa		27.97	■■■□□ 2.07
UBXN1-215	ENST00000533476	MIA2	Q96PC5	1412 aa		27.96	■■■□□ 2.07
UBXN1-215	ENST00000533476	TIMELESS	Q9UNS1	1208 aa		27.95	■■■□□ 2.06
UBXN1-215	ENST00000533476	UACA	Q9BZF9	1416 aa		27.94	■■■□□ 2.06
UBXN1-215	ENST00000533476	NUP153	P49790	1475 aa	Known RBP	27.93	■■■□□ 2.06
UBXN1-215	ENST00000533476	PELP1	Q8IZL8	1130 aa	Known RBP	27.93	■■■□□ 2.06
UBXN1-215	ENST00000533476	GCC2	Q8IWJ2	1684 aa		27.91	■■■□□ 2.06
UBXN1-215	ENST00000533476	NUP160	Q12769	1436 aa		27.9	■■■□□ 2.06
UBXN1-215	ENST00000533476	AKNA	Q7Z591	1439 aa		27.9	■■■□□ 2.06
UBXN1-215	ENST00000533476	CHMP7	Q8WUX9	453 aa	Predicted RBP	27.9	■■■□□ 2.06
UBXN1-215	ENST00000533476	SIN3A	Q96ST3	1273 aa		27.88	■■■□□ 2.05
UBXN1-215	ENST00000533476	ARID3C	A6NKF2	412 aa		27.79	■■■□□ 2.04
UBXN1-215	ENST00000533476	CARMIL2	Q6F5E8	1435 aa		27.79	■■■□□ 2.04
UBXN1-215	ENST00000533476	CDK11A	Q9UQ88	783 aa	Predicted RBP	27.77	■■■□□ 2.04
UBXN1-215	ENST00000533476	FBLN2	P98095	1184 aa		27.73	■■■□□ 2.03
UBXN1-215	ENST00000533476	DNMT1	P26358	1616 aa	Known RBP	27.73	■■■□□ 2.03
UBXN1-215	ENST00000533476	TRO	Q12816	1431 aa	Predicted RBP	27.73	■■■□□ 2.03
UBXN1-215	ENST00000533476	PLB1	Q6P1J6	1458 aa		27.73	■■■□□ 2.03
UBXN1-215	ENST00000533476	ADCY10	Q96PN6	1610 aa		27.72	■■■□□ 2.03
UBXN1-215	ENST00000533476	PPP1R15A	O75807	674 aa	Predicted RBP	27.71	■■■□□ 2.03
UBXN1-215	ENST00000533476	JPH4	Q96JJ6	628 aa		27.71	■■■□□ 2.03
UBXN1-215	ENST00000533476	YTHDC1	Q96MU7	727 aa	Known RBP	27.71	■■■□□ 2.03
UBXN1-215	ENST00000533476	GTF3C3	Q9Y5Q9	886 aa		27.71	■■■□□ 2.03
UBXN1-215	ENST00000533476	RRP7BP	Q9NSQ0	103 aa		27.7	■■■□□ 2.02
UBXN1-215	ENST00000533476	DAPK1	P53355	1430 aa		27.69	■■■□□ 2.02
UBXN1-215	ENST00000533476	ROCK1	Q13464	1354 aa		27.69	■■■□□ 2.02
UBXN1-215	ENST00000533476	CHIC2	Q9UKJ5	165 aa		27.69	■■■□□ 2.02
UBXN1-215	ENST00000533476	KDM6B	O15054	1643 aa		27.68	■■■□□ 2.02
UBXN1-215	ENST00000533476	TONSL	Q96HA7	1378 aa		27.68	■■■□□ 2.02
UBXN1-215	ENST00000533476	ITSN2	Q9NZM3	1697 aa		27.68	■■■□□ 2.02
UBXN1-215	ENST00000533476	PRG4	Q92954	1404 aa	Predicted RBP	27.65	■■■□□ 2.02

Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms