RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 CEP170Q5SW79 1584 aa22.89■■□□□ 1.25
TRIM3-212ENST00000533064 NUP160Q12769 1436 aa22.86■■□□□ 1.25
TRIM3-212ENST00000533064 IQGAP2Q13576 1575 aa22.86■■□□□ 1.25
TRIM3-212ENST00000533064 KIAA0586Q9BVV6 1533 aa22.83■■□□□ 1.24
TRIM3-212ENST00000533064 CEP162Q5TB80 1403 aa22.79■■□□□ 1.24
TRIM3-212ENST00000533064 RANGAP1P46060 587 aaPredicted RBP22.77■■□□□ 1.24
TRIM3-212ENST00000533064 CLIP1P30622 1438 aa22.73■■□□□ 1.23
TRIM3-212ENST00000533064 OSCARQ8IYS5 282 aa22.71■■□□□ 1.23
TRIM3-212ENST00000533064 CLASP1Q7Z460 1538 aa22.71■■□□□ 1.23
TRIM3-212ENST00000533064 EFCAB5A4FU69 1503 aa22.7■■□□□ 1.22
TRIM3-212ENST00000533064 UGGT2Q9NYU1 1516 aa22.69■■□□□ 1.22
TRIM3-212ENST00000533064 SAMD9Q5K651 1589 aa22.67■■□□□ 1.22
TRIM3-212ENST00000533064 SHROOM2Q13796 1616 aa22.67■■□□□ 1.22
TRIM3-212ENST00000533064 JPH4Q96JJ6 628 aa22.65■■□□□ 1.22
TRIM3-212ENST00000533064 ARHGAP35Q9NRY4 1499 aa22.63■■□□□ 1.21
TRIM3-212ENST00000533064 KIAA0556O60303 1618 aa22.61■■□□□ 1.21
TRIM3-212ENST00000533064 CARMIL2Q6F5E8 1435 aa22.6■■□□□ 1.21
TRIM3-212ENST00000533064 DISP1Q96F81 1524 aa22.57■■□□□ 1.2
TRIM3-212ENST00000533064 P3H3Q8IVL6 736 aa22.56■■□□□ 1.2
TRIM3-212ENST00000533064 PRG4Q92954 1404 aaPredicted RBP22.56■■□□□ 1.2
TRIM3-212ENST00000533064 ARAP1Q96P48 1450 aa22.55■■□□□ 1.2
TRIM3-212ENST00000533064 FHOD3Q2V2M9 1422 aa22.54■■□□□ 1.2
TRIM3-212ENST00000533064 FMN1Q68DA7 1419 aa22.48■■□□□ 1.19
TRIM3-212ENST00000533064 VPS8Q8N3P4 1428 aa22.47■■□□□ 1.19
TRIM3-212ENST00000533064 ERCC6L2Q5T890 1561 aa22.46■■□□□ 1.19
TRIM3-212ENST00000533064 TTBK1Q5TCY1 1321 aaPredicted RBP22.41■■□□□ 1.18
TRIM3-212ENST00000533064 PCF11O94913 1555 aaKnown RBP22.39■■□□□ 1.17
TRIM3-212ENST00000533064 PTPRGP23470 1445 aa22.37■■□□□ 1.17
TRIM3-212ENST00000533064 RAPGEF6Q8TEU7 1601 aa22.37■■□□□ 1.17
TRIM3-212ENST00000533064 FYCO1Q9BQS8 1478 aa22.35■■□□□ 1.17
TRIM3-212ENST00000533064 ARHGEF11O15085 1522 aa22.35■■□□□ 1.17
TRIM3-212ENST00000533064 CASKIN1Q8WXD9 1431 aa22.34■■□□□ 1.17
TRIM3-212ENST00000533064 HECW1Q76N89 1606 aa22.34■■□□□ 1.17
TRIM3-212ENST00000533064 RIMBP3CA6NJZ7 1639 aa22.33■■□□□ 1.16
TRIM3-212ENST00000533064 RIMBP3BA6NNM3 1639 aa22.33■■□□□ 1.16
TRIM3-212ENST00000533064 RIMBP3Q9UFD9 1639 aa22.33■■□□□ 1.16
TRIM3-212ENST00000533064 ATP1B4Q9UN42 357 aaPredicted RBP22.31■■□□□ 1.16
TRIM3-212ENST00000533064 LRRIQ1Q96JM4 1722 aa22.3■■□□□ 1.16
TRIM3-212ENST00000533064 APLP2Q06481 763 aa22.3■■□□□ 1.16
TRIM3-212ENST00000533064 ABCA8O94911 1581 aa22.29■■□□□ 1.16
TRIM3-212ENST00000533064 PLB1Q6P1J6 1458 aa22.28■■□□□ 1.16
TRIM3-212ENST00000533064 CFAP43Q8NDM7 1665 aa22.25■■□□□ 1.15
TRIM3-212ENST00000533064 UACAQ9BZF9 1416 aa22.24■■□□□ 1.15
TRIM3-212ENST00000533064 CCDC18Q5T9S5 1454 aa22.23■■□□□ 1.15
TRIM3-212ENST00000533064 ABCC2Q92887 1545 aa22.22■■□□□ 1.15
TRIM3-212ENST00000533064 TIAM1Q13009 1591 aa22.2■■□□□ 1.14
TRIM3-212ENST00000533064 NUP153P49790 1475 aaKnown RBP22.2■■□□□ 1.14
TRIM3-212ENST00000533064 MAP3K1Q13233 1512 aa22.19■■□□□ 1.14
TRIM3-212ENST00000533064 EPRSP07814 1512 aaKnown RBP22.19■■□□□ 1.14
TRIM3-212ENST00000533064 UHRF1BP1LA0JNW5 1464 aa22.18■■□□□ 1.14
TRIM3-212ENST00000533064 ADCY10Q96PN6 1610 aa22.17■■□□□ 1.14
TRIM3-212ENST00000533064 CDK13Q14004 1512 aaKnown RBP22.15■■□□□ 1.14
TRIM3-212ENST00000533064 ARID3CA6NKF2 412 aa22.13■■□□□ 1.13
TRIM3-212ENST00000533064 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.13■■□□□ 1.13
TRIM3-212ENST00000533064 HNRNPUL2Q1KMD3 747 aaKnown RBP22.13■■□□□ 1.13
TRIM3-212ENST00000533064 ZCCHC11Q5TAX3 1644 aaKnown RBP22.12■■□□□ 1.13
TRIM3-212ENST00000533064 CYB5RLQ6IPT4 315 aa22.11■■□□□ 1.13
TRIM3-212ENST00000533064 ATP10BO94823 1461 aa22.09■■□□□ 1.13
TRIM3-212ENST00000533064 CDK11AQ9UQ88 783 aaPredicted RBP22.08■■□□□ 1.13
TRIM3-212ENST00000533064 KDM5BQ9UGL1 1544 aa22.08■■□□□ 1.12
TRIM3-212ENST00000533064 LRRC9Q6ZRR7 1453 aa22.06■■□□□ 1.12
TRIM3-212ENST00000533064 MTUS2Q5JR59 1369 aa22.06■■□□□ 1.12
TRIM3-212ENST00000533064 EHBP1L1Q8N3D4 1523 aa22.05■■□□□ 1.12
TRIM3-212ENST00000533064 PPARGC1BQ86YN6 1023 aaKnown RBP22.04■■□□□ 1.12
TRIM3-212ENST00000533064 NPM1P06748 294 aaKnown RBP eCLIP22.04■■□□□ 1.12
TRIM3-212ENST00000533064 DNAJC5Q9H3Z4 198 aa22.03■■□□□ 1.12
TRIM3-212ENST00000533064 SUPT6HQ7KZ85 1726 aaKnown RBP22.03■■□□□ 1.12
TRIM3-212ENST00000533064 KANK4Q5T7N3 995 aaPredicted RBP22.01■■□□□ 1.11
TRIM3-212ENST00000533064 PLEKHD1A6NEE1 506 aa22■■□□□ 1.11
TRIM3-212ENST00000533064 MAGI3Q5TCQ9 1506 aa21.99■■□□□ 1.11
TRIM3-212ENST00000533064 TROQ12816 1431 aaPredicted RBP21.96■■□□□ 1.11
TRIM3-212ENST00000533064 KIF14Q15058 1648 aa21.95■■□□□ 1.1
TRIM3-212ENST00000533064 WDR7Q9Y4E6 1490 aa21.9■■□□□ 1.1
TRIM3-212ENST00000533064 ASXL2Q76L83 1435 aa21.89■■□□□ 1.09
TRIM3-212ENST00000533064 MAPKBP1O60336 1514 aa21.89■■□□□ 1.09
TRIM3-212ENST00000533064 NCOA2Q15596 1464 aa21.88■■□□□ 1.09
TRIM3-212ENST00000533064 ITSN2Q9NZM3 1697 aa21.86■■□□□ 1.09
TRIM3-212ENST00000533064 KCNH8Q96L42 1107 aa21.84■■□□□ 1.09
TRIM3-212ENST00000533064 CDC42BPAQ5VT25 1732 aa21.83■■□□□ 1.09
TRIM3-212ENST00000533064 MYO5CQ9NQX4 1742 aa21.82■■□□□ 1.08
TRIM3-212ENST00000533064 CCNB3Q8WWL7 1395 aa21.8■■□□□ 1.08
TRIM3-212ENST00000533064 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.79■■□□□ 1.08
TRIM3-212ENST00000533064 PHLDB1Q86UU1 1377 aa21.79■■□□□ 1.08
TRIM3-212ENST00000533064 TTC37Q6PGP7 1564 aa21.79■■□□□ 1.08
TRIM3-212ENST00000533064 MYOM3Q5VTT5 1437 aa21.77■■□□□ 1.08
TRIM3-212ENST00000533064 ABCC10Q5T3U5 1492 aa21.77■■□□□ 1.08
TRIM3-212ENST00000533064 ABCA9Q8IUA7 1624 aa21.77■■□□□ 1.08
TRIM3-212ENST00000533064 PREX2Q70Z35 1606 aa21.76■■□□□ 1.07
TRIM3-212ENST00000533064 CDC42BPBQ9Y5S2 1711 aa21.76■■□□□ 1.07
TRIM3-212ENST00000533064 TRIM26Q12899 539 aaPredicted RBP21.73■■□□□ 1.07
TRIM3-212ENST00000533064 FGD6Q6ZV73 1430 aa21.71■■□□□ 1.07
TRIM3-212ENST00000533064 PTPN23Q9H3S7 1636 aa21.71■■□□□ 1.07
TRIM3-212ENST00000533064 DIP2BQ9P265 1576 aa21.71■■□□□ 1.07
TRIM3-212ENST00000533064 GPATCH8Q9UKJ3 1502 aaKnown RBP21.71■■□□□ 1.07
TRIM3-212ENST00000533064 KIF13AQ9H1H9 1805 aa21.71■■□□□ 1.07
TRIM3-212ENST00000533064 MIA2Q96PC5 1412 aa21.7■■□□□ 1.06
TRIM3-212ENST00000533064 RRBP1Q9P2E9 1410 aaKnown RBP21.7■■□□□ 1.06
TRIM3-212ENST00000533064 GLI2P10070 1586 aa21.69■■□□□ 1.06
TRIM3-212ENST00000533064 PCGF6Q9BYE7 350 aa21.67■■□□□ 1.06
TRIM3-212ENST00000533064 CFDP1Q9UEE9 299 aaPredicted RBP21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms