RNA–Protein interactions for RNA: ENST00000531539.5

FOXR1-202, Transcript of forkhead box R1, humanhuman

TSL 1 (best)

Gene FOXR1, Length 1,053 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXR1-202ENST00000531539 PRG4Q92954 1404 aaPredicted RBP24.27■■□□□ 1.48
FOXR1-202ENST00000531539 ERCC6L2Q5T890 1561 aa24.26■■□□□ 1.47
FOXR1-202ENST00000531539 KIAA0586Q9BVV6 1533 aa24.25■■□□□ 1.47
FOXR1-202ENST00000531539 RAPGEF2Q9Y4G8 1499 aa24.25■■□□□ 1.47
FOXR1-202ENST00000531539 CSRNP3Q8WYN3 585 aa24.23■■□□□ 1.47
FOXR1-202ENST00000531539 FAM9AQ8IZU1 332 aaPredicted RBP24.22■■□□□ 1.47
FOXR1-202ENST00000531539 SHROOM2Q13796 1616 aa24.21■■□□□ 1.47
FOXR1-202ENST00000531539 TRHP20396 242 aaPredicted RBP24.12■■□□□ 1.45
FOXR1-202ENST00000531539 TTBK1Q5TCY1 1321 aaPredicted RBP24.11■■□□□ 1.45
FOXR1-202ENST00000531539 PRXQ9BXM0 1461 aa24.1■■□□□ 1.45
FOXR1-202ENST00000531539 EEA1Q15075 1411 aa24.07■■□□□ 1.44
FOXR1-202ENST00000531539 IQGAP2Q13576 1575 aa24.04■■□□□ 1.44
FOXR1-202ENST00000531539 CARMIL2Q6F5E8 1435 aa24.04■■□□□ 1.44
FOXR1-202ENST00000531539 PTPRGP23470 1445 aa24.01■■□□□ 1.43
FOXR1-202ENST00000531539 NPM1P06748 294 aaKnown RBP eCLIP23.98■■□□□ 1.43
FOXR1-202ENST00000531539 EHMT2Q96KQ7 1210 aa23.97■■□□□ 1.43
FOXR1-202ENST00000531539 TNIKQ9UKE5 1360 aa23.97■■□□□ 1.43
FOXR1-202ENST00000531539 DISP1Q96F81 1524 aa23.92■■□□□ 1.42
FOXR1-202ENST00000531539 UGGT2Q9NYU1 1516 aa23.92■■□□□ 1.42
FOXR1-202ENST00000531539 RANGAP1P46060 587 aaPredicted RBP23.9■■□□□ 1.42
FOXR1-202ENST00000531539 P3H3Q8IVL6 736 aa23.88■■□□□ 1.41
FOXR1-202ENST00000531539 CTTNBP2Q8WZ74 1663 aa23.88■■□□□ 1.41
FOXR1-202ENST00000531539 UBTFP17480 764 aaKnown RBP23.84■■□□□ 1.41
FOXR1-202ENST00000531539 GOLGA3Q08378 1498 aa23.83■■□□□ 1.41
FOXR1-202ENST00000531539 KIAA0556O60303 1618 aa23.81■■□□□ 1.4
FOXR1-202ENST00000531539 ADCY10Q96PN6 1610 aa23.8■■□□□ 1.4
FOXR1-202ENST00000531539 UACAQ9BZF9 1416 aa23.79■■□□□ 1.4
FOXR1-202ENST00000531539 KIF21BO75037 1637 aa23.76■■□□□ 1.39
FOXR1-202ENST00000531539 FAM69CQ0P6D2 419 aa23.73■■□□□ 1.39
FOXR1-202ENST00000531539 UHRF1BP1LA0JNW5 1464 aa23.7■■□□□ 1.38
FOXR1-202ENST00000531539 ABCC2Q92887 1545 aa23.69■■□□□ 1.38
FOXR1-202ENST00000531539 PLB1Q6P1J6 1458 aa23.67■■□□□ 1.38
FOXR1-202ENST00000531539 MAPKBP1O60336 1514 aa23.64■■□□□ 1.38
FOXR1-202ENST00000531539 ARID3CA6NKF2 412 aa23.63■■□□□ 1.37
FOXR1-202ENST00000531539 ABCC10Q5T3U5 1492 aa23.62■■□□□ 1.37
FOXR1-202ENST00000531539 ASXL2Q76L83 1435 aa23.6■■□□□ 1.37
FOXR1-202ENST00000531539 KDM5BQ9UGL1 1544 aa23.59■■□□□ 1.37
FOXR1-202ENST00000531539 SAMD9Q5K651 1589 aa23.59■■□□□ 1.37
FOXR1-202ENST00000531539 FHOD3Q2V2M9 1422 aa23.59■■□□□ 1.37
FOXR1-202ENST00000531539 ABCA8O94911 1581 aa23.57■■□□□ 1.36
FOXR1-202ENST00000531539 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.54■■□□□ 1.36
FOXR1-202ENST00000531539 HNRNPUL2Q1KMD3 747 aaKnown RBP23.54■■□□□ 1.36
FOXR1-202ENST00000531539 KCNH8Q96L42 1107 aa23.54■■□□□ 1.36
FOXR1-202ENST00000531539 KIF13AQ9H1H9 1805 aa23.54■■□□□ 1.36
FOXR1-202ENST00000531539 ZCCHC11Q5TAX3 1644 aaKnown RBP23.51■■□□□ 1.35
FOXR1-202ENST00000531539 DIP2BQ9P265 1576 aa23.5■■□□□ 1.35
FOXR1-202ENST00000531539 EFCAB5A4FU69 1503 aa23.49■■□□□ 1.35
FOXR1-202ENST00000531539 ATP1B4Q9UN42 357 aaPredicted RBP23.48■■□□□ 1.35
FOXR1-202ENST00000531539 ATP10BO94823 1461 aa23.47■■□□□ 1.35
FOXR1-202ENST00000531539 EPRSP07814 1512 aaKnown RBP23.43■■□□□ 1.34
FOXR1-202ENST00000531539 ARHGAP35Q9NRY4 1499 aa23.43■■□□□ 1.34
FOXR1-202ENST00000531539 RAPGEF6Q8TEU7 1601 aa23.43■■□□□ 1.34
FOXR1-202ENST00000531539 WDR7Q9Y4E6 1490 aa23.42■■□□□ 1.34
FOXR1-202ENST00000531539 LOC105371045A0A1W2PR82 267 aa23.4■■□□□ 1.34
FOXR1-202ENST00000531539 TSPOAP1O95153 1857 aa23.39■■□□□ 1.33
FOXR1-202ENST00000531539 PLEKHD1A6NEE1 506 aa23.38■■□□□ 1.33
FOXR1-202ENST00000531539 GLI2P10070 1586 aa23.38■■□□□ 1.33
FOXR1-202ENST00000531539 NUP153P49790 1475 aaKnown RBP23.37■■□□□ 1.33
FOXR1-202ENST00000531539 FMN1Q68DA7 1419 aa23.36■■□□□ 1.33
FOXR1-202ENST00000531539 CLIP1P30622 1438 aa23.32■■□□□ 1.32
FOXR1-202ENST00000531539 CD109Q6YHK3 1445 aa23.3■■□□□ 1.32
FOXR1-202ENST00000531539 MAP3K4Q9Y6R4 1608 aa23.24■■□□□ 1.31
FOXR1-202ENST00000531539 CDK11AQ9UQ88 783 aaPredicted RBP23.24■■□□□ 1.31
FOXR1-202ENST00000531539 TEX14Q8IWB6 1497 aa23.22■■□□□ 1.31
FOXR1-202ENST00000531539 CDK13Q14004 1512 aaKnown RBP23.22■■□□□ 1.31
FOXR1-202ENST00000531539 PPRC1Q5VV67 1664 aaKnown RBP23.21■■□□□ 1.31
FOXR1-202ENST00000531539 KDM6BO15054 1643 aa23.19■■□□□ 1.3
FOXR1-202ENST00000531539 HECW1Q76N89 1606 aa23.18■■□□□ 1.3
FOXR1-202ENST00000531539 CFAP43Q8NDM7 1665 aa23.17■■□□□ 1.3
FOXR1-202ENST00000531539 MAGI3Q5TCQ9 1506 aa23.17■■□□□ 1.3
FOXR1-202ENST00000531539 CEP162Q5TB80 1403 aa23.16■■□□□ 1.3
FOXR1-202ENST00000531539 CASKIN1Q8WXD9 1431 aa23.16■■□□□ 1.3
FOXR1-202ENST00000531539 COL17A1Q9UMD9 1497 aaPredicted RBP23.14■■□□□ 1.29
FOXR1-202ENST00000531539 ABCA9Q8IUA7 1624 aa23.11■■□□□ 1.29
FOXR1-202ENST00000531539 PCF11O94913 1555 aaKnown RBP23.08■■□□□ 1.29
FOXR1-202ENST00000531539 FYCO1Q9BQS8 1478 aa23.05■■□□□ 1.28
FOXR1-202ENST00000531539 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.05■■□□□ 1.28
FOXR1-202ENST00000531539 TROQ12816 1431 aaPredicted RBP23.04■■□□□ 1.28
FOXR1-202ENST00000531539 CCDC18Q5T9S5 1454 aa23.04■■□□□ 1.28
FOXR1-202ENST00000531539 PHLDB1Q86UU1 1377 aa23.03■■□□□ 1.28
FOXR1-202ENST00000531539 LRRIQ1Q96JM4 1722 aa23.02■■□□□ 1.28
FOXR1-202ENST00000531539 RAPGEF3O95398 923 aa23.02■■□□□ 1.28
FOXR1-202ENST00000531539 NEO1Q92859 1461 aa22.98■■□□□ 1.27
FOXR1-202ENST00000531539 EFCAB2Q5VUJ9 269 aa22.98■■□□□ 1.27
FOXR1-202ENST00000531539 PLCH2O75038 1416 aa22.98■■□□□ 1.27
FOXR1-202ENST00000531539 ARAP3Q8WWN8 1544 aa22.98■■□□□ 1.27
FOXR1-202ENST00000531539 TTC37Q6PGP7 1564 aa22.97■■□□□ 1.27
FOXR1-202ENST00000531539 AEBP2Q6ZN18 517 aaPredicted RBP22.97■■□□□ 1.27
FOXR1-202ENST00000531539 AKNAQ7Z591 1439 aa22.97■■□□□ 1.27
FOXR1-202ENST00000531539 FANCAO15360 1455 aa22.96■■□□□ 1.27
FOXR1-202ENST00000531539 KIF14Q15058 1648 aa22.93■■□□□ 1.26
FOXR1-202ENST00000531539 MTUS2Q5JR59 1369 aa22.9■■□□□ 1.26
FOXR1-202ENST00000531539 DENND4BO75064 1496 aaPredicted RBP22.88■■□□□ 1.25
FOXR1-202ENST00000531539 VPS8Q8N3P4 1428 aa22.88■■□□□ 1.25
FOXR1-202ENST00000531539 SCAPERQ9BY12 1400 aa22.87■■□□□ 1.25
FOXR1-202ENST00000531539 KDM4FA0A1W2PPD8 638 aa22.86■■□□□ 1.25
FOXR1-202ENST00000531539 ZNF777Q9ULD5 760 aaPredicted RBP22.86■■□□□ 1.25
FOXR1-202ENST00000531539 ARHGAP5Q13017 1502 aa22.84■■□□□ 1.25
FOXR1-202ENST00000531539 MYO5CQ9NQX4 1742 aa22.83■■□□□ 1.25
FOXR1-202ENST00000531539 ADGRL1O94910 1474 aa22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms