RNA–Protein interactions for RNA: ENST00000530961.5

CCS-206, Transcript of copper chaperone for superoxide dismutase, humanhuman

TSL 5

Gene CCS, Length 1,214 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-206ENST00000530961 CSRNP3Q8WYN3 585 aa25.46■■□□□ 1.67
CCS-206ENST00000530961 NUP160Q12769 1436 aa25.41■■□□□ 1.66
CCS-206ENST00000530961 CUL7Q14999 1698 aa25.38■■□□□ 1.65
CCS-206ENST00000530961 FAM9AQ8IZU1 332 aaPredicted RBP25.36■■□□□ 1.65
CCS-206ENST00000530961 RAPGEF2Q9Y4G8 1499 aa25.35■■□□□ 1.65
CCS-206ENST00000530961 PRXQ9BXM0 1461 aa25.34■■□□□ 1.65
CCS-206ENST00000530961 KDM4FA0A1W2PPD8 638 aa25.3■■□□□ 1.64
CCS-206ENST00000530961 CEP170Q5SW79 1584 aa25.27■■□□□ 1.64
CCS-206ENST00000530961 JPH4Q96JJ6 628 aa25.25■■□□□ 1.63
CCS-206ENST00000530961 KIAA0586Q9BVV6 1533 aa25.24■■□□□ 1.63
CCS-206ENST00000530961 PRG4Q92954 1404 aaPredicted RBP25.1■■□□□ 1.61
CCS-206ENST00000530961 KIF13AQ9H1H9 1805 aa25.09■■□□□ 1.61
CCS-206ENST00000530961 SHROOM2Q13796 1616 aa25.03■■□□□ 1.6
CCS-206ENST00000530961 ERCC6L2Q5T890 1561 aa25.02■■□□□ 1.6
CCS-206ENST00000530961 UBTFP17480 764 aaKnown RBP25.02■■□□□ 1.6
CCS-206ENST00000530961 KIF21BO75037 1637 aa25.01■■□□□ 1.59
CCS-206ENST00000530961 IQGAP2Q13576 1575 aa25.01■■□□□ 1.59
CCS-206ENST00000530961 CARMIL2Q6F5E8 1435 aa25■■□□□ 1.59
CCS-206ENST00000530961 GOLGA3Q08378 1498 aa25■■□□□ 1.59
CCS-206ENST00000530961 FAM69CQ0P6D2 419 aa24.97■■□□□ 1.59
CCS-206ENST00000530961 FBXO41Q8TF61 875 aa24.97■■□□□ 1.59
CCS-206ENST00000530961 EHMT2Q96KQ7 1210 aa24.97■■□□□ 1.59
CCS-206ENST00000530961 UGGT2Q9NYU1 1516 aa24.95■■□□□ 1.58
CCS-206ENST00000530961 KDM6BO15054 1643 aa24.94■■□□□ 1.58
CCS-206ENST00000530961 TNIKQ9UKE5 1360 aa24.9■■□□□ 1.58
CCS-206ENST00000530961 ABCC10Q5T3U5 1492 aa24.89■■□□□ 1.58
CCS-206ENST00000530961 HECW2Q9P2P5 1572 aa24.88■■□□□ 1.57
CCS-206ENST00000530961 PTPRGP23470 1445 aa24.87■■□□□ 1.57
CCS-206ENST00000530961 DISP1Q96F81 1524 aa24.87■■□□□ 1.57
CCS-206ENST00000530961 RANGAP1P46060 587 aaPredicted RBP24.82■■□□□ 1.56
CCS-206ENST00000530961 CTTNBP2Q8WZ74 1663 aa24.8■■□□□ 1.56
CCS-206ENST00000530961 TTBK1Q5TCY1 1321 aaPredicted RBP24.8■■□□□ 1.56
CCS-206ENST00000530961 ADGRL1O94910 1474 aa24.78■■□□□ 1.56
CCS-206ENST00000530961 NPM1P06748 294 aaKnown RBP eCLIP24.78■■□□□ 1.56
CCS-206ENST00000530961 P3H3Q8IVL6 736 aa24.77■■□□□ 1.56
CCS-206ENST00000530961 LMTK3Q96Q04 1460 aa24.75■■□□□ 1.55
CCS-206ENST00000530961 KIAA0556O60303 1618 aa24.75■■□□□ 1.55
CCS-206ENST00000530961 DIP2BQ9P265 1576 aa24.74■■□□□ 1.55
CCS-206ENST00000530961 MAPKBP1O60336 1514 aa24.71■■□□□ 1.55
CCS-206ENST00000530961 LOC105371045A0A1W2PR82 267 aa24.71■■□□□ 1.55
CCS-206ENST00000530961 UACAQ9BZF9 1416 aa24.69■■□□□ 1.54
CCS-206ENST00000530961 EFCAB5A4FU69 1503 aa24.66■■□□□ 1.54
CCS-206ENST00000530961 SAMD9Q5K651 1589 aa24.65■■□□□ 1.54
CCS-206ENST00000530961 UHRF1BP1LA0JNW5 1464 aa24.63■■□□□ 1.53
CCS-206ENST00000530961 FHOD3Q2V2M9 1422 aa24.62■■□□□ 1.53
CCS-206ENST00000530961 ARHGAP35Q9NRY4 1499 aa24.6■■□□□ 1.53
CCS-206ENST00000530961 CLIP1P30622 1438 aa24.58■■□□□ 1.53
CCS-206ENST00000530961 PLB1Q6P1J6 1458 aa24.58■■□□□ 1.52
CCS-206ENST00000530961 TSPOAP1O95153 1857 aa24.57■■□□□ 1.52
CCS-206ENST00000530961 SOCS7O14512 581 aa24.56■■□□□ 1.52
CCS-206ENST00000530961 ABCC2Q92887 1545 aa24.56■■□□□ 1.52
CCS-206ENST00000530961 FMN1Q68DA7 1419 aa24.53■■□□□ 1.52
CCS-206ENST00000530961 ADCY10Q96PN6 1610 aa24.52■■□□□ 1.52
CCS-206ENST00000530961 CEP162Q5TB80 1403 aa24.51■■□□□ 1.51
CCS-206ENST00000530961 ABCA8O94911 1581 aa24.5■■□□□ 1.51
CCS-206ENST00000530961 KDM5BQ9UGL1 1544 aa24.49■■□□□ 1.51
CCS-206ENST00000530961 ARID3CA6NKF2 412 aa24.4■■□□□ 1.5
CCS-206ENST00000530961 ATP1B4Q9UN42 357 aaPredicted RBP24.4■■□□□ 1.5
CCS-206ENST00000530961 ATP10BO94823 1461 aa24.39■■□□□ 1.5
CCS-206ENST00000530961 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.39■■□□□ 1.49
CCS-206ENST00000530961 HNRNPUL2Q1KMD3 747 aaKnown RBP24.39■■□□□ 1.49
CCS-206ENST00000530961 NUP153P49790 1475 aaKnown RBP24.38■■□□□ 1.49
CCS-206ENST00000530961 ASXL2Q76L83 1435 aa24.38■■□□□ 1.49
CCS-206ENST00000530961 RAPGEF6Q8TEU7 1601 aa24.36■■□□□ 1.49
CCS-206ENST00000530961 ILDR2Q71H61 639 aa24.36■■□□□ 1.49
CCS-206ENST00000530961 CASKIN1Q8WXD9 1431 aa24.35■■□□□ 1.49
CCS-206ENST00000530961 DISP3Q9P2K9 1392 aa24.32■■□□□ 1.48
CCS-206ENST00000530961 PLEKHD1A6NEE1 506 aa24.31■■□□□ 1.48
CCS-206ENST00000530961 CDK11AQ9UQ88 783 aaPredicted RBP24.3■■□□□ 1.48
CCS-206ENST00000530961 WDR7Q9Y4E6 1490 aa24.29■■□□□ 1.48
CCS-206ENST00000530961 ZCCHC11Q5TAX3 1644 aaKnown RBP24.27■■□□□ 1.48
CCS-206ENST00000530961 KCNH8Q96L42 1107 aa24.26■■□□□ 1.47
CCS-206ENST00000530961 EPRSP07814 1512 aaKnown RBP24.25■■□□□ 1.47
CCS-206ENST00000530961 FYCO1Q9BQS8 1478 aa24.25■■□□□ 1.47
CCS-206ENST00000530961 HECW1Q76N89 1606 aa24.23■■□□□ 1.47
CCS-206ENST00000530961 PPRC1Q5VV67 1664 aaKnown RBP24.23■■□□□ 1.47
CCS-206ENST00000530961 COL17A1Q9UMD9 1497 aaPredicted RBP24.22■■□□□ 1.47
CCS-206ENST00000530961 VPS8Q8N3P4 1428 aa24.21■■□□□ 1.47
CCS-206ENST00000530961 GLI2P10070 1586 aa24.2■■□□□ 1.47
CCS-206ENST00000530961 CCDC18Q5T9S5 1454 aa24.19■■□□□ 1.46
CCS-206ENST00000530961 CDK13Q14004 1512 aaKnown RBP24.17■■□□□ 1.46
CCS-206ENST00000530961 PCF11O94913 1555 aaKnown RBP24.16■■□□□ 1.46
CCS-206ENST00000530961 TEX14Q8IWB6 1497 aa24.14■■□□□ 1.46
CCS-206ENST00000530961 TROQ12816 1431 aaPredicted RBP24.1■■□□□ 1.45
CCS-206ENST00000530961 CD109Q6YHK3 1445 aa24.09■■□□□ 1.45
CCS-206ENST00000530961 APLP2Q06481 763 aa24.05■■□□□ 1.44
CCS-206ENST00000530961 MTUS2Q5JR59 1369 aa24.03■■□□□ 1.44
CCS-206ENST00000530961 CERKQ8TCT0 537 aa24■■□□□ 1.43
CCS-206ENST00000530961 MAGI3Q5TCQ9 1506 aa24■■□□□ 1.43
CCS-206ENST00000530961 MAP3K4Q9Y6R4 1608 aa23.99■■□□□ 1.43
CCS-206ENST00000530961 MAP3K1Q13233 1512 aa23.96■■□□□ 1.43
CCS-206ENST00000530961 ABCA9Q8IUA7 1624 aa23.95■■□□□ 1.42
CCS-206ENST00000530961 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.94■■□□□ 1.42
CCS-206ENST00000530961 PHLDB1Q86UU1 1377 aa23.94■■□□□ 1.42
CCS-206ENST00000530961 SPATA31D1Q6ZQQ2 1576 aa23.94■■□□□ 1.42
CCS-206ENST00000530961 PTPRMP28827 1452 aa23.93■■□□□ 1.42
CCS-206ENST00000530961 PLCH2O75038 1416 aa23.93■■□□□ 1.42
CCS-206ENST00000530961 KANK4Q5T7N3 995 aaPredicted RBP23.9■■□□□ 1.42
CCS-206ENST00000530961 EFCAB2Q5VUJ9 269 aa23.9■■□□□ 1.42
CCS-206ENST00000530961 LRRIQ1Q96JM4 1722 aa23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms