RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 RUSC2Q8N2Y8 1516 aa22.44■■□□□ 1.18
CPSF1-204ENST00000529288 CARMIL1Q5VZK9 1371 aa22.42■■□□□ 1.18
CPSF1-204ENST00000529288 TTBK1Q5TCY1 1321 aaPredicted RBP22.42■■□□□ 1.18
CPSF1-204ENST00000529288 NPM1P06748 294 aaKnown RBP eCLIP22.42■■□□□ 1.18
CPSF1-204ENST00000529288 KIAA0586Q9BVV6 1533 aa22.4■■□□□ 1.18
CPSF1-204ENST00000529288 CUL7Q14999 1698 aa22.38■■□□□ 1.17
CPSF1-204ENST00000529288 FAM69CQ0P6D2 419 aa22.31■■□□□ 1.16
CPSF1-204ENST00000529288 AEBP2Q6ZN18 517 aaPredicted RBP22.27■■□□□ 1.16
CPSF1-204ENST00000529288 PTPRGP23470 1445 aa22.26■■□□□ 1.15
CPSF1-204ENST00000529288 CARMIL2Q6F5E8 1435 aa22.23■■□□□ 1.15
CPSF1-204ENST00000529288 ADCY10Q96PN6 1610 aa22.21■■□□□ 1.15
CPSF1-204ENST00000529288 TNIKQ9UKE5 1360 aa22.2■■□□□ 1.14
CPSF1-204ENST00000529288 ABCC10Q5T3U5 1492 aa22.19■■□□□ 1.14
CPSF1-204ENST00000529288 RAPGEF2Q9Y4G8 1499 aa22.18■■□□□ 1.14
CPSF1-204ENST00000529288 IQGAP2Q13576 1575 aa22.16■■□□□ 1.14
CPSF1-204ENST00000529288 MAPKBP1O60336 1514 aa22.16■■□□□ 1.14
CPSF1-204ENST00000529288 KIF13AQ9H1H9 1805 aa22.15■■□□□ 1.14
CPSF1-204ENST00000529288 DIP2BQ9P265 1576 aa22.08■■□□□ 1.13
CPSF1-204ENST00000529288 DISP1Q96F81 1524 aa22.07■■□□□ 1.12
CPSF1-204ENST00000529288 UACAQ9BZF9 1416 aa22.06■■□□□ 1.12
CPSF1-204ENST00000529288 ABCC2Q92887 1545 aa22.05■■□□□ 1.12
CPSF1-204ENST00000529288 UGGT2Q9NYU1 1516 aa22.01■■□□□ 1.11
CPSF1-204ENST00000529288 ASXL2Q76L83 1435 aa22.01■■□□□ 1.11
CPSF1-204ENST00000529288 UHRF1BP1LA0JNW5 1464 aa21.98■■□□□ 1.11
CPSF1-204ENST00000529288 PLB1Q6P1J6 1458 aa21.97■■□□□ 1.11
CPSF1-204ENST00000529288 TSPOAP1O95153 1857 aa21.96■■□□□ 1.11
CPSF1-204ENST00000529288 KIAA0556O60303 1618 aa21.95■■□□□ 1.1
CPSF1-204ENST00000529288 KDM6BO15054 1643 aa21.92■■□□□ 1.1
CPSF1-204ENST00000529288 PRXQ9BXM0 1461 aa21.92■■□□□ 1.1
CPSF1-204ENST00000529288 P3H3Q8IVL6 736 aa21.91■■□□□ 1.1
CPSF1-204ENST00000529288 CSRNP3Q8WYN3 585 aa21.9■■□□□ 1.1
CPSF1-204ENST00000529288 GOLGA3Q08378 1498 aa21.9■■□□□ 1.1
CPSF1-204ENST00000529288 KDM5BQ9UGL1 1544 aa21.89■■□□□ 1.09
CPSF1-204ENST00000529288 CTTNBP2Q8WZ74 1663 aa21.88■■□□□ 1.09
CPSF1-204ENST00000529288 FAM9AQ8IZU1 332 aaPredicted RBP21.87■■□□□ 1.09
CPSF1-204ENST00000529288 ARID3CA6NKF2 412 aa21.85■■□□□ 1.09
CPSF1-204ENST00000529288 RANGAP1P46060 587 aaPredicted RBP21.85■■□□□ 1.09
CPSF1-204ENST00000529288 KCNH8Q96L42 1107 aa21.85■■□□□ 1.09
CPSF1-204ENST00000529288 EPRSP07814 1512 aaKnown RBP21.85■■□□□ 1.09
CPSF1-204ENST00000529288 ZCCHC11Q5TAX3 1644 aaKnown RBP21.84■■□□□ 1.09
CPSF1-204ENST00000529288 GLI2P10070 1586 aa21.84■■□□□ 1.09
CPSF1-204ENST00000529288 WDR7Q9Y4E6 1490 aa21.77■■□□□ 1.08
CPSF1-204ENST00000529288 KDM4FA0A1W2PPD8 638 aa21.76■■□□□ 1.07
CPSF1-204ENST00000529288 PPRC1Q5VV67 1664 aaKnown RBP21.75■■□□□ 1.07
CPSF1-204ENST00000529288 ABCA8O94911 1581 aa21.74■■□□□ 1.07
CPSF1-204ENST00000529288 TEX14Q8IWB6 1497 aa21.73■■□□□ 1.07
CPSF1-204ENST00000529288 MAP3K4Q9Y6R4 1608 aa21.71■■□□□ 1.07
CPSF1-204ENST00000529288 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.71■■□□□ 1.07
CPSF1-204ENST00000529288 HNRNPUL2Q1KMD3 747 aaKnown RBP21.71■■□□□ 1.07
CPSF1-204ENST00000529288 EHMT2Q96KQ7 1210 aa21.71■■□□□ 1.07
CPSF1-204ENST00000529288 COL17A1Q9UMD9 1497 aaPredicted RBP21.71■■□□□ 1.07
CPSF1-204ENST00000529288 EEA1Q15075 1411 aa21.7■■□□□ 1.06
CPSF1-204ENST00000529288 CD109Q6YHK3 1445 aa21.7■■□□□ 1.06
CPSF1-204ENST00000529288 ATP10BO94823 1461 aa21.64■■□□□ 1.05
CPSF1-204ENST00000529288 FHOD3Q2V2M9 1422 aa21.59■■□□□ 1.05
CPSF1-204ENST00000529288 SAMD9Q5K651 1589 aa21.59■■□□□ 1.05
CPSF1-204ENST00000529288 MAGI3Q5TCQ9 1506 aa21.59■■□□□ 1.05
CPSF1-204ENST00000529288 UBTFP17480 764 aaKnown RBP21.56■■□□□ 1.04
CPSF1-204ENST00000529288 CHIC1Q5VXU3 224 aa21.56■■□□□ 1.04
CPSF1-204ENST00000529288 ADGRL1O94910 1474 aa21.56■■□□□ 1.04
CPSF1-204ENST00000529288 CFAP43Q8NDM7 1665 aa21.56■■□□□ 1.04
CPSF1-204ENST00000529288 RAPGEF6Q8TEU7 1601 aa21.54■■□□□ 1.04
CPSF1-204ENST00000529288 PLEKHD1A6NEE1 506 aa21.5■■□□□ 1.03
CPSF1-204ENST00000529288 ATP1B4Q9UN42 357 aaPredicted RBP21.49■■□□□ 1.03
CPSF1-204ENST00000529288 NUP153P49790 1475 aaKnown RBP21.49■■□□□ 1.03
CPSF1-204ENST00000529288 KIF21BO75037 1637 aa21.47■■□□□ 1.03
CPSF1-204ENST00000529288 RAPGEF3O95398 923 aa21.44■■□□□ 1.02
CPSF1-204ENST00000529288 ABCA9Q8IUA7 1624 aa21.41■■□□□ 1.02
CPSF1-204ENST00000529288 EFCAB5A4FU69 1503 aa21.41■■□□□ 1.02
CPSF1-204ENST00000529288 ARAP3Q8WWN8 1544 aa21.4■■□□□ 1.02
CPSF1-204ENST00000529288 PHLDB1Q86UU1 1377 aa21.4■■□□□ 1.02
CPSF1-204ENST00000529288 NEO1Q92859 1461 aa21.35■■□□□ 1.01
CPSF1-204ENST00000529288 ARID4BQ4LE39 1312 aaPredicted RBP21.33■■□□□ 1.01
CPSF1-204ENST00000529288 CDK13Q14004 1512 aaKnown RBP21.33■■□□□ 1
CPSF1-204ENST00000529288 FMN1Q68DA7 1419 aa21.29■■□□□ 1
CPSF1-204ENST00000529288 ARHGAP35Q9NRY4 1499 aa21.29■■□□□ 1
CPSF1-204ENST00000529288 AKNAQ7Z591 1439 aa21.29■■□□□ 1
CPSF1-204ENST00000529288 CDK11AQ9UQ88 783 aaPredicted RBP21.27■■□□□ 1
CPSF1-204ENST00000529288 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.27■■□□□ 1
CPSF1-204ENST00000529288 FANCAO15360 1455 aa21.26■□□□□ 0.99
CPSF1-204ENST00000529288 DENND4BO75064 1496 aaPredicted RBP21.26■□□□□ 0.99
CPSF1-204ENST00000529288 TTC37Q6PGP7 1564 aa21.23■□□□□ 0.99
CPSF1-204ENST00000529288 FRMPD1Q5SYB0 1578 aa21.21■□□□□ 0.99
CPSF1-204ENST00000529288 HECW2Q9P2P5 1572 aa21.21■□□□□ 0.99
CPSF1-204ENST00000529288 HECW1Q76N89 1606 aa21.21■□□□□ 0.99
CPSF1-204ENST00000529288 EFCAB2Q5VUJ9 269 aa21.18■□□□□ 0.98
CPSF1-204ENST00000529288 PLPPR3Q6T4P5 718 aa21.18■□□□□ 0.98
CPSF1-204ENST00000529288 PLCH2O75038 1416 aa21.18■□□□□ 0.98
CPSF1-204ENST00000529288 SCAPERQ9BY12 1400 aa21.17■□□□□ 0.98
CPSF1-204ENST00000529288 CFAP74Q9C0B2 1584 aa21.17■□□□□ 0.98
CPSF1-204ENST00000529288 MLECQ14165 292 aa21.15■□□□□ 0.98
CPSF1-204ENST00000529288 PTPRMP28827 1452 aa21.13■□□□□ 0.97
CPSF1-204ENST00000529288 MYT1LQ9UL68 1186 aa21.13■□□□□ 0.97
CPSF1-204ENST00000529288 CLIP1P30622 1438 aa21.12■□□□□ 0.97
CPSF1-204ENST00000529288 TROQ12816 1431 aaPredicted RBP21.12■□□□□ 0.97
CPSF1-204ENST00000529288 YEATS2Q9ULM3 1422 aa21.12■□□□□ 0.97
CPSF1-204ENST00000529288 ARHGEF40Q8TER5 1519 aa21.1■□□□□ 0.97
CPSF1-204ENST00000529288 RICTORQ6R327 1708 aa21.1■□□□□ 0.97
CPSF1-204ENST00000529288 ADAMTSL3P82987 1691 aa21.1■□□□□ 0.97
CPSF1-204ENST00000529288 ZFYVE16Q7Z3T8 1539 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms