RNA–Protein interactions for RNA: ENST00000528232.5

CTNND1-218, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 5,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-218ENST00000528232 NPM1P06748 294 aaKnown RBP eCLIP9.73□□□□□ -0.85
CTNND1-218ENST00000528232 FKBP8Q14318 412 aa9.73□□□□□ -0.85
CTNND1-218ENST00000528232 MIER1Q8N108 512 aa9.71□□□□□ -0.85
CTNND1-218ENST00000528232 CUX2O14529 1486 aa9.71□□□□□ -0.85
CTNND1-218ENST00000528232 SMARCA4P51532 1647 aa9.71□□□□□ -0.85
CTNND1-218ENST00000528232 NCLP19338 710 aaKnown RBP9.71□□□□□ -0.86
CTNND1-218ENST00000528232 VPS8Q8N3P4 1428 aa9.7□□□□□ -0.86
CTNND1-218ENST00000528232 CARMIL1Q5VZK9 1371 aa9.7□□□□□ -0.86
CTNND1-218ENST00000528232 RRP7BPQ9NSQ0 103 aa9.7□□□□□ -0.86
CTNND1-218ENST00000528232 FAM9BQ8IZU0 186 aa9.69□□□□□ -0.86
CTNND1-218ENST00000528232 EIF4G2P78344 907 aaKnown RBP eCLIP9.69□□□□□ -0.86
CTNND1-218ENST00000528232 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.68□□□□□ -0.861e-8■■□□□ 13.5
CTNND1-218ENST00000528232 PLEKHD1A6NEE1 506 aa9.68□□□□□ -0.86
CTNND1-218ENST00000528232 CCNB3Q8WWL7 1395 aa9.68□□□□□ -0.86
CTNND1-218ENST00000528232 CHGAP10645 457 aaKnown RBP9.67□□□□□ -0.86
CTNND1-218ENST00000528232 SCAF1Q9H7N4 1312 aaKnown RBP9.67□□□□□ -0.86
CTNND1-218ENST00000528232 TMC1Q8TDI8 760 aa9.66□□□□□ -0.86
CTNND1-218ENST00000528232 ESF1Q9H501 851 aaKnown RBP9.66□□□□□ -0.86
CTNND1-218ENST00000528232 ERCC6Q03468 1493 aa9.65□□□□□ -0.86
CTNND1-218ENST00000528232 MRS2Q9HD23 443 aa9.65□□□□□ -0.87
CTNND1-218ENST00000528232 EIF4G1Q04637 1599 aaKnown RBP9.65□□□□□ -0.87
CTNND1-218ENST00000528232 TRIM44Q96DX7 344 aaPredicted RBP9.64□□□□□ -0.87
CTNND1-218ENST00000528232 STAG3Q9UJ98 1225 aa9.64□□□□□ -0.87
CTNND1-218ENST00000528232 KDM2AQ9Y2K7 1162 aa9.64□□□□□ -0.87
CTNND1-218ENST00000528232 ERICH6BQ5W0A0 696 aa9.63□□□□□ -0.87
CTNND1-218ENST00000528232 CFDP1Q9UEE9 299 aaPredicted RBP9.63□□□□□ -0.87
CTNND1-218ENST00000528232 ARHGAP35Q9NRY4 1499 aa9.62□□□□□ -0.87
CTNND1-218ENST00000528232 WDR43Q15061 677 aaKnown RBP eCLIP9.61□□□□□ -0.873e-9■■■□□ 15.6
CTNND1-218ENST00000528232 ATAD2BQ9ULI0 1458 aa9.61□□□□□ -0.87
CTNND1-218ENST00000528232 HIRIP3Q9BW71 556 aaPredicted RBP9.6□□□□□ -0.87
CTNND1-218ENST00000528232 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.6□□□□□ -0.87
CTNND1-218ENST00000528232 PDS5BQ9NTI5 1447 aa9.59□□□□□ -0.87
CTNND1-218ENST00000528232 SETD5Q9C0A6 1442 aa9.59□□□□□ -0.87
CTNND1-218ENST00000528232 TIMELESSQ9UNS1 1208 aa9.59□□□□□ -0.87
CTNND1-218ENST00000528232 CCDC136Q96JN2 1154 aa9.57□□□□□ -0.88
CTNND1-218ENST00000528232 SLC24A1O60721 1099 aa9.57□□□□□ -0.88
CTNND1-218ENST00000528232 NPM2Q86SE8 214 aaKnown RBP9.57□□□□□ -0.88
CTNND1-218ENST00000528232 FMN1Q68DA7 1419 aa9.57□□□□□ -0.88
CTNND1-218ENST00000528232 KCNH8Q96L42 1107 aa9.57□□□□□ -0.88
CTNND1-218ENST00000528232 RAPGEF2Q9Y4G8 1499 aa9.56□□□□□ -0.88
CTNND1-218ENST00000528232 SIN3AQ96ST3 1273 aa9.55□□□□□ -0.88
CTNND1-218ENST00000528232 SALL2Q9Y467 1007 aaPredicted RBP9.55□□□□□ -0.88
CTNND1-218ENST00000528232 CADPSQ9ULU8 1353 aa9.55□□□□□ -0.88
CTNND1-218ENST00000528232 CDK11BP21127 795 aaKnown RBP9.53□□□□□ -0.88
CTNND1-218ENST00000528232 CDCA8Q53HL2 280 aa9.53□□□□□ -0.88
CTNND1-218ENST00000528232 UPF2Q9HAU5 1272 aaKnown RBP9.53□□□□□ -0.88
CTNND1-218ENST00000528232 KANK4Q5T7N3 995 aaPredicted RBP9.53□□□□□ -0.88
CTNND1-218ENST00000528232 CARD11Q9BXL7 1154 aa9.52□□□□□ -0.89
CTNND1-218ENST00000528232 DDRGK1Q96HY6 314 aa9.51□□□□□ -0.89
CTNND1-218ENST00000528232 HSP90AA1P07900 732 aaKnown RBP9.51□□□□□ -0.89
CTNND1-218ENST00000528232 PPM1GO15355 546 aaPredicted RBP9.51□□□□□ -0.89
CTNND1-218ENST00000528232 CARMIL2Q6F5E8 1435 aa9.51□□□□□ -0.89
CTNND1-218ENST00000528232 RGL3Q3MIN7 710 aa9.5□□□□□ -0.89
CTNND1-218ENST00000528232 RAB3GAP2Q9H2M9 1393 aa9.49□□□□□ -0.89
CTNND1-218ENST00000528232 IRX6P78412 446 aaPredicted RBP9.48□□□□□ -0.89
CTNND1-218ENST00000528232 KNSTRNQ9Y448 316 aa9.47□□□□□ -0.89
CTNND1-218ENST00000528232 TDRD9Q8NDG6 1382 aaKnown RBP9.47□□□□□ -0.89
CTNND1-218ENST00000528232 RUSC2Q8N2Y8 1516 aa9.47□□□□□ -0.89
CTNND1-218ENST00000528232 CCER2I3L3R5 266 aa9.47□□□□□ -0.89
CTNND1-218ENST00000528232 FHOD3Q2V2M9 1422 aa9.45□□□□□ -0.9
CTNND1-218ENST00000528232 FANCD2Q9BXW9 1451 aa9.45□□□□□ -0.9
CTNND1-218ENST00000528232 KANK1Q14678 1352 aa9.45□□□□□ -0.9
CTNND1-218ENST00000528232 NBR1Q14596 966 aa9.45□□□□□ -0.9
CTNND1-218ENST00000528232 CFAP53Q96M91 514 aa9.45□□□□□ -0.9
CTNND1-218ENST00000528232 PPP1R15AO75807 674 aaPredicted RBP9.43□□□□□ -0.9
CTNND1-218ENST00000528232 CCDC18Q5T9S5 1454 aa9.43□□□□□ -0.9
CTNND1-218ENST00000528232 SUPT16HQ9Y5B9 1047 aaKnown RBP9.42□□□□□ -0.9
CTNND1-218ENST00000528232 PLPPR3Q6T4P5 718 aa9.42□□□□□ -0.9
CTNND1-218ENST00000528232 KIF21BO75037 1637 aa9.41□□□□□ -0.9
CTNND1-218ENST00000528232 ANKRD30AQ9BXX3 1397 aa9.41□□□□□ -0.9
CTNND1-218ENST00000528232 HSPA5P11021 654 aaKnown RBP9.41□□□□□ -0.9
CTNND1-218ENST00000528232 PPP4R2Q9NY27 417 aa9.41□□□□□ -0.9
CTNND1-218ENST00000528232 TMF1P82094 1093 aa9.4□□□□□ -0.9
CTNND1-218ENST00000528232 MYH16Q9H6N6 1097 aa9.4□□□□□ -0.9
CTNND1-218ENST00000528232 DCAF11Q8TEB1 546 aa9.4□□□□□ -0.9
CTNND1-218ENST00000528232 MPHOSPH9Q99550 1183 aa9.39□□□□□ -0.91
CTNND1-218ENST00000528232 NCAPD3P42695 1498 aa9.39□□□□□ -0.91
CTNND1-218ENST00000528232 FGD5Q6ZNL6 1462 aa9.39□□□□□ -0.91
CTNND1-218ENST00000528232 PKD2Q13563 968 aa9.38□□□□□ -0.91
CTNND1-218ENST00000528232 NAP1L5Q96NT1 182 aaPredicted RBP9.38□□□□□ -0.91
CTNND1-218ENST00000528232 DHX57Q6P158 1386 aaKnown RBP9.37□□□□□ -0.91
CTNND1-218ENST00000528232 ERICH3Q5RHP9 1530 aa9.37□□□□□ -0.91
CTNND1-218ENST00000528232 DEKP35659 375 aaKnown RBP9.36□□□□□ -0.91
CTNND1-218ENST00000528232 BECN1Q14457 450 aa9.36□□□□□ -0.91
CTNND1-218ENST00000528232 L1TD1Q5T7N2 865 aaKnown RBP9.36□□□□□ -0.91
CTNND1-218ENST00000528232 PHF23Q9BUL5 403 aaPredicted RBP9.36□□□□□ -0.91
CTNND1-218ENST00000528232 CC2D1BQ5T0F9 858 aaKnown RBP9.35□□□□□ -0.91
CTNND1-218ENST00000528232 RSPH6AQ9H0K4 717 aa9.35□□□□□ -0.91
CTNND1-218ENST00000528232 NUDCQ9Y266 331 aa9.35□□□□□ -0.91
CTNND1-218ENST00000528232 NUP155O75694 1391 aa9.35□□□□□ -0.91
CTNND1-218ENST00000528232 CUX1P39880 1505 aa9.35□□□□□ -0.91
CTNND1-218ENST00000528232 ARXQ96QS3 562 aa9.34□□□□□ -0.91
CTNND1-218ENST00000528232 NOP58Q9Y2X3 529 aaKnown RBP9.34□□□□□ -0.91
CTNND1-218ENST00000528232 KTN1Q86UP2 1357 aaKnown RBP9.34□□□□□ -0.91
CTNND1-218ENST00000528232 MAPK8IP3Q9UPT6 1336 aa9.34□□□□□ -0.91
CTNND1-218ENST00000528232 POGKQ9P215 609 aa9.33□□□□□ -0.92
CTNND1-218ENST00000528232 ROCK2O75116 1388 aaKnown RBP9.33□□□□□ -0.92
CTNND1-218ENST00000528232 IGF1RP08069 1367 aa9.33□□□□□ -0.92
CTNND1-218ENST00000528232 SYNJ1O43426 1573 aa9.33□□□□□ -0.92
CTNND1-218ENST00000528232 FOXD1Q16676 465 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms