RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 ADAMTS12P58397 1594 aa32.07■■■□□ 2.72
VPS28-209ENST00000528142 SNAPC4Q5SXM2 1469 aa32.05■■■□□ 2.72
VPS28-209ENST00000528142 TTBK1Q5TCY1 1321 aaPredicted RBP32.02■■■□□ 2.72
VPS28-209ENST00000528142 FHAD1B1AJZ9 1412 aa32.02■■■□□ 2.72
VPS28-209ENST00000528142 APLP2Q06481 763 aa31.99■■■□□ 2.71
VPS28-209ENST00000528142 CTTNBP2Q8WZ74 1663 aa31.94■■■□□ 2.7
VPS28-209ENST00000528142 MAGI1Q96QZ7 1491 aaPredicted RBP31.93■■■□□ 2.7
VPS28-209ENST00000528142 EFCAB5A4FU69 1503 aa31.87■■■□□ 2.69
VPS28-209ENST00000528142 SYNJ2O15056 1496 aa31.83■■■□□ 2.69
VPS28-209ENST00000528142 GRIN2AQ12879 1464 aa31.81■■■□□ 2.68
VPS28-209ENST00000528142 P3H3Q8IVL6 736 aa31.77■■■□□ 2.68
VPS28-209ENST00000528142 FHOD3Q2V2M9 1422 aa31.76■■■□□ 2.67
VPS28-209ENST00000528142 KANK4Q5T7N3 995 aaPredicted RBP31.76■■■□□ 2.67
VPS28-209ENST00000528142 CHMP7Q8WUX9 453 aaPredicted RBP31.73■■■□□ 2.67
VPS28-209ENST00000528142 MAP3K1Q13233 1512 aa31.72■■■□□ 2.67
VPS28-209ENST00000528142 SAMD9Q5K651 1589 aa31.72■■■□□ 2.67
VPS28-209ENST00000528142 FBLN2P98095 1184 aa31.71■■■□□ 2.67
VPS28-209ENST00000528142 CEP170Q5SW79 1584 aa31.68■■■□□ 2.66
VPS28-209ENST00000528142 CHD1O14646 1710 aa31.64■■■□□ 2.66
VPS28-209ENST00000528142 PCF11O94913 1555 aaKnown RBP31.64■■■□□ 2.66
VPS28-209ENST00000528142 TIAM1Q13009 1591 aa31.63■■■□□ 2.65
VPS28-209ENST00000528142 IQGAP2Q13576 1575 aa31.62■■■□□ 2.65
VPS28-209ENST00000528142 NUP160Q12769 1436 aa31.62■■■□□ 2.65
VPS28-209ENST00000528142 FMN1Q68DA7 1419 aa31.62■■■□□ 2.65
VPS28-209ENST00000528142 CASKIN1Q8WXD9 1431 aa31.62■■■□□ 2.65
VPS28-209ENST00000528142 FYCO1Q9BQS8 1478 aa31.6■■■□□ 2.65
VPS28-209ENST00000528142 KIAA0586Q9BVV6 1533 aa31.58■■■□□ 2.65
VPS28-209ENST00000528142 UGGT2Q9NYU1 1516 aa31.51■■■□□ 2.64
VPS28-209ENST00000528142 LRRC9Q6ZRR7 1453 aa31.51■■■□□ 2.64
VPS28-209ENST00000528142 ZEB1P37275 1124 aaPredicted RBP31.49■■■□□ 2.63
VPS28-209ENST00000528142 CFAP43Q8NDM7 1665 aa31.49■■■□□ 2.63
VPS28-209ENST00000528142 RRBP1Q9P2E9 1410 aaKnown RBP31.45■■■□□ 2.63
VPS28-209ENST00000528142 ATP1B4Q9UN42 357 aaPredicted RBP31.45■■■□□ 2.62
VPS28-209ENST00000528142 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.41■■■□□ 2.62
VPS28-209ENST00000528142 HNRNPUL2Q1KMD3 747 aaKnown RBP31.39■■■□□ 2.62
VPS28-209ENST00000528142 DISP1Q96F81 1524 aa31.38■■■□□ 2.61
VPS28-209ENST00000528142 JPH4Q96JJ6 628 aa31.33■■■□□ 2.61
VPS28-209ENST00000528142 CCNB3Q8WWL7 1395 aa31.32■■■□□ 2.6
VPS28-209ENST00000528142 CCER1Q8TC90 406 aaPredicted RBP31.31■■■□□ 2.6
VPS28-209ENST00000528142 KIAA0556O60303 1618 aa31.31■■■□□ 2.6
VPS28-209ENST00000528142 CLASP1Q7Z460 1538 aa31.29■■■□□ 2.6
VPS28-209ENST00000528142 PHLDB1Q86UU1 1377 aa31.28■■■□□ 2.6
VPS28-209ENST00000528142 LRRIQ1Q96JM4 1722 aa31.27■■■□□ 2.6
VPS28-209ENST00000528142 SHROOM2Q13796 1616 aa31.24■■■□□ 2.59
VPS28-209ENST00000528142 HECW1Q76N89 1606 aa31.21■■■□□ 2.59
VPS28-209ENST00000528142 CCDC18Q5T9S5 1454 aa31.2■■■□□ 2.59
VPS28-209ENST00000528142 MTUS2Q5JR59 1369 aa31.18■■■□□ 2.58
VPS28-209ENST00000528142 PRG4Q92954 1404 aaPredicted RBP31.18■■■□□ 2.58
VPS28-209ENST00000528142 ERCC6L2Q5T890 1561 aa31.15■■■□□ 2.58
VPS28-209ENST00000528142 EPRSP07814 1512 aaKnown RBP31.14■■■□□ 2.58
VPS28-209ENST00000528142 CARMIL2Q6F5E8 1435 aa31.12■■■□□ 2.57
VPS28-209ENST00000528142 EHBP1L1Q8N3D4 1523 aa31.1■■■□□ 2.57
VPS28-209ENST00000528142 MAGI3Q5TCQ9 1506 aa31.09■■■□□ 2.57
VPS28-209ENST00000528142 OSCARQ8IYS5 282 aa31.06■■■□□ 2.56
VPS28-209ENST00000528142 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.04■■■□□ 2.563e-6■■□□□ 12.6
VPS28-209ENST00000528142 NCOA2Q15596 1464 aa31.04■■■□□ 2.56
VPS28-209ENST00000528142 CDK13Q14004 1512 aaKnown RBP31.04■■■□□ 2.56
VPS28-209ENST00000528142 RAPGEF6Q8TEU7 1601 aa31.03■■■□□ 2.56
VPS28-209ENST00000528142 NUP153P49790 1475 aaKnown RBP31.03■■■□□ 2.56
VPS28-209ENST00000528142 ARHGEF11O15085 1522 aa31.01■■■□□ 2.55
VPS28-209ENST00000528142 FGD6Q6ZV73 1430 aa31■■■□□ 2.55
VPS28-209ENST00000528142 SUPT6HQ7KZ85 1726 aaKnown RBP31■■■□□ 2.55
VPS28-209ENST00000528142 PLB1Q6P1J6 1458 aa30.98■■■□□ 2.55
VPS28-209ENST00000528142 FAM50AQ14320 339 aaKnown RBP30.98■■■□□ 2.55
VPS28-209ENST00000528142 ITGAEP38570 1179 aa30.97■■■□□ 2.55
VPS28-209ENST00000528142 MYOM3Q5VTT5 1437 aa30.95■■■□□ 2.55
VPS28-209ENST00000528142 ARID3CA6NKF2 412 aa30.93■■■□□ 2.54
VPS28-209ENST00000528142 PTPRGP23470 1445 aa30.92■■■□□ 2.54
VPS28-209ENST00000528142 ABCA8O94911 1581 aa30.9■■■□□ 2.54
VPS28-209ENST00000528142 DHX57Q6P158 1386 aaKnown RBP30.84■■■□□ 2.53
VPS28-209ENST00000528142 CDK11AQ9UQ88 783 aaPredicted RBP30.82■■■□□ 2.52
VPS28-209ENST00000528142 SETD5Q9C0A6 1442 aa30.8■■■□□ 2.52
VPS28-209ENST00000528142 RAB3GAP2Q9H2M9 1393 aa30.78■■■□□ 2.52
VPS28-209ENST00000528142 TCOF1Q13428 1488 aaKnown RBP30.77■■■□□ 2.52
VPS28-209ENST00000528142 CLSPNQ9HAW4 1339 aa30.76■■■□□ 2.52
VPS28-209ENST00000528142 PTPN23Q9H3S7 1636 aa30.76■■■□□ 2.51
VPS28-209ENST00000528142 MIA2Q96PC5 1412 aa30.75■■■□□ 2.51
VPS28-209ENST00000528142 TROQ12816 1431 aaPredicted RBP30.75■■■□□ 2.51
VPS28-209ENST00000528142 UACAQ9BZF9 1416 aa30.74■■■□□ 2.51
VPS28-209ENST00000528142 PTPRKQ15262 1439 aa30.72■■■□□ 2.51
VPS28-209ENST00000528142 ATP10BO94823 1461 aa30.7■■■□□ 2.51
VPS28-209ENST00000528142 ABCC2Q92887 1545 aa30.67■■■□□ 2.5
VPS28-209ENST00000528142 ADCY10Q96PN6 1610 aa30.62■■■□□ 2.49
VPS28-209ENST00000528142 UHRF1BP1LA0JNW5 1464 aa30.6■■■□□ 2.49
VPS28-209ENST00000528142 HFM1A2PYH4 1435 aa30.6■■■□□ 2.49
VPS28-209ENST00000528142 PLEKHD1A6NEE1 506 aa30.59■■■□□ 2.49
VPS28-209ENST00000528142 KIF14Q15058 1648 aa30.55■■■□□ 2.48
VPS28-209ENST00000528142 GPATCH8Q9UKJ3 1502 aaKnown RBP30.53■■■□□ 2.48
VPS28-209ENST00000528142 NAIPQ13075 1403 aa30.52■■■□□ 2.48
VPS28-209ENST00000528142 KDM5BQ9UGL1 1544 aa30.51■■■□□ 2.47
VPS28-209ENST00000528142 RIMBP3CA6NJZ7 1639 aa30.5■■■□□ 2.47
VPS28-209ENST00000528142 RIMBP3BA6NNM3 1639 aa30.5■■■□□ 2.47
VPS28-209ENST00000528142 RIMBP3Q9UFD9 1639 aa30.5■■■□□ 2.47
VPS28-209ENST00000528142 ZCCHC11Q5TAX3 1644 aaKnown RBP30.49■■■□□ 2.47
VPS28-209ENST00000528142 ABCC10Q5T3U5 1492 aa30.48■■■□□ 2.47
VPS28-209ENST00000528142 MAPKBP1O60336 1514 aa30.48■■■□□ 2.47
VPS28-209ENST00000528142 ZNF644Q9H582 1327 aaPredicted RBP30.47■■■□□ 2.47
VPS28-209ENST00000528142 AKNAQ7Z591 1439 aa30.47■■■□□ 2.47
VPS28-209ENST00000528142 ITSN2Q9NZM3 1697 aa30.46■■■□□ 2.47
VPS28-209ENST00000528142 CFDP1Q9UEE9 299 aaPredicted RBP30.45■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms