RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 KIAA0586Q9BVV6 1533 aa35.16■■■■□ 3.22
VPS28-206ENST00000526734 JPH4Q96JJ6 628 aa35.15■■■■□ 3.22
VPS28-206ENST00000526734 PRG4Q92954 1404 aaPredicted RBP35.13■■■■□ 3.21
VPS28-206ENST00000526734 RAPGEF2Q9Y4G8 1499 aa34.99■■■■□ 3.19
VPS28-206ENST00000526734 TRHP20396 242 aaPredicted RBP34.91■■■■□ 3.18
VPS28-206ENST00000526734 IQGAP2Q13576 1575 aa34.88■■■■□ 3.17
VPS28-206ENST00000526734 CARMIL2Q6F5E8 1435 aa34.82■■■■□ 3.17
VPS28-206ENST00000526734 PRXQ9BXM0 1461 aa34.78■■■■□ 3.16
VPS28-206ENST00000526734 EEA1Q15075 1411 aa34.73■■■■□ 3.15
VPS28-206ENST00000526734 UGGT2Q9NYU1 1516 aa34.71■■■■□ 3.15
VPS28-206ENST00000526734 TNIKQ9UKE5 1360 aa34.7■■■■□ 3.15
VPS28-206ENST00000526734 PTPRGP23470 1445 aa34.69■■■■□ 3.14
VPS28-206ENST00000526734 NPM1P06748 294 aaKnown RBP eCLIP34.64■■■■□ 3.14
VPS28-206ENST00000526734 CTTNBP2Q8WZ74 1663 aa34.63■■■■□ 3.13
VPS28-206ENST00000526734 CSRNP3Q8WYN3 585 aa34.63■■■■□ 3.13
VPS28-206ENST00000526734 DISP1Q96F81 1524 aa34.63■■■■□ 3.13
VPS28-206ENST00000526734 ADCY10Q96PN6 1610 aa34.62■■■■□ 3.13
VPS28-206ENST00000526734 MAPKBP1O60336 1514 aa34.56■■■■□ 3.12
VPS28-206ENST00000526734 KIAA0556O60303 1618 aa34.55■■■■□ 3.12
VPS28-206ENST00000526734 GOLGA3Q08378 1498 aa34.53■■■■□ 3.12
VPS28-206ENST00000526734 UHRF1BP1LA0JNW5 1464 aa34.48■■■■□ 3.11
VPS28-206ENST00000526734 CHIC1Q5VXU3 224 aa34.46■■■■□ 3.11
VPS28-206ENST00000526734 UACAQ9BZF9 1416 aa34.46■■■■□ 3.11
VPS28-206ENST00000526734 ABCC2Q92887 1545 aa34.45■■■■□ 3.1
VPS28-206ENST00000526734 TTBK1Q5TCY1 1321 aaPredicted RBP34.44■■■■□ 3.1
VPS28-206ENST00000526734 ABCC10Q5T3U5 1492 aa34.41■■■■□ 3.1
VPS28-206ENST00000526734 KIF13AQ9H1H9 1805 aa34.35■■■■□ 3.09
VPS28-206ENST00000526734 DIP2BQ9P265 1576 aa34.32■■■■□ 3.09
VPS28-206ENST00000526734 KIF21BO75037 1637 aa34.32■■■■□ 3.08
VPS28-206ENST00000526734 FAM9AQ8IZU1 332 aaPredicted RBP34.3■■■■□ 3.08
VPS28-206ENST00000526734 FAM69CQ0P6D2 419 aa34.29■■■■□ 3.08
VPS28-206ENST00000526734 KDM5BQ9UGL1 1544 aa34.29■■■■□ 3.08
VPS28-206ENST00000526734 PLB1Q6P1J6 1458 aa34.27■■■■□ 3.08
VPS28-206ENST00000526734 ASXL2Q76L83 1435 aa34.22■■■■□ 3.07
VPS28-206ENST00000526734 SAMD9Q5K651 1589 aa34.2■■■■□ 3.07
VPS28-206ENST00000526734 ABCA8O94911 1581 aa34.19■■■■□ 3.06
VPS28-206ENST00000526734 ZCCHC11Q5TAX3 1644 aaKnown RBP34.15■■■■□ 3.06
VPS28-206ENST00000526734 GLI2P10070 1586 aa34.12■■■■□ 3.05
VPS28-206ENST00000526734 P3H3Q8IVL6 736 aa34.06■■■■□ 3.04
VPS28-206ENST00000526734 EFCAB5A4FU69 1503 aa34.05■■■■□ 3.04
VPS28-206ENST00000526734 WDR7Q9Y4E6 1490 aa34.03■■■■□ 3.04
VPS28-206ENST00000526734 EPRSP07814 1512 aaKnown RBP34.03■■■■□ 3.04
VPS28-206ENST00000526734 UBTFP17480 764 aaKnown RBP33.96■■■■□ 3.03
VPS28-206ENST00000526734 FHOD3Q2V2M9 1422 aa33.94■■■■□ 3.02
VPS28-206ENST00000526734 RAPGEF6Q8TEU7 1601 aa33.93■■■■□ 3.02
VPS28-206ENST00000526734 RANGAP1P46060 587 aaPredicted RBP33.91■■■■□ 3.02
VPS28-206ENST00000526734 TSPOAP1O95153 1857 aa33.9■■■■□ 3.02
VPS28-206ENST00000526734 MAP3K4Q9Y6R4 1608 aa33.9■■■■□ 3.02
VPS28-206ENST00000526734 ATP10BO94823 1461 aa33.88■■■■□ 3.01
VPS28-206ENST00000526734 KDM6BO15054 1643 aa33.87■■■■□ 3.01
VPS28-206ENST00000526734 TEX14Q8IWB6 1497 aa33.86■■■■□ 3.01
VPS28-206ENST00000526734 PPRC1Q5VV67 1664 aaKnown RBP33.84■■■■□ 3.01
VPS28-206ENST00000526734 NUP153P49790 1475 aaKnown RBP33.8■■■■□ 3
VPS28-206ENST00000526734 EHMT2Q96KQ7 1210 aa33.79■■■■□ 3
VPS28-206ENST00000526734 CFAP43Q8NDM7 1665 aa33.77■■■■□ 3
VPS28-206ENST00000526734 FMN1Q68DA7 1419 aa33.74■■■□□ 2.99
VPS28-206ENST00000526734 ARID3CA6NKF2 412 aa33.74■■■□□ 2.99
VPS28-206ENST00000526734 KCNH8Q96L42 1107 aa33.74■■■□□ 2.99
VPS28-206ENST00000526734 MAGI3Q5TCQ9 1506 aa33.74■■■□□ 2.99
VPS28-206ENST00000526734 CD109Q6YHK3 1445 aa33.73■■■□□ 2.99
VPS28-206ENST00000526734 ARHGAP35Q9NRY4 1499 aa33.73■■■□□ 2.99
VPS28-206ENST00000526734 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.69■■■□□ 2.98
VPS28-206ENST00000526734 HNRNPUL2Q1KMD3 747 aaKnown RBP33.69■■■□□ 2.98
VPS28-206ENST00000526734 ABCA9Q8IUA7 1624 aa33.62■■■□□ 2.97
VPS28-206ENST00000526734 PLEKHD1A6NEE1 506 aa33.59■■■□□ 2.97
VPS28-206ENST00000526734 HECW1Q76N89 1606 aa33.59■■■□□ 2.97
VPS28-206ENST00000526734 COL17A1Q9UMD9 1497 aaPredicted RBP33.54■■■□□ 2.96
VPS28-206ENST00000526734 PHLDB1Q86UU1 1377 aa33.52■■■□□ 2.96
VPS28-206ENST00000526734 CDK13Q14004 1512 aaKnown RBP33.48■■■□□ 2.95
VPS28-206ENST00000526734 AEBP2Q6ZN18 517 aaPredicted RBP33.45■■■□□ 2.95
VPS28-206ENST00000526734 CLIP1P30622 1438 aa33.45■■■□□ 2.94
VPS28-206ENST00000526734 NEO1Q92859 1461 aa33.44■■■□□ 2.94
VPS28-206ENST00000526734 ARAP3Q8WWN8 1544 aa33.44■■■□□ 2.94
VPS28-206ENST00000526734 CDK11AQ9UQ88 783 aaPredicted RBP33.44■■■□□ 2.94
VPS28-206ENST00000526734 ATP1B4Q9UN42 357 aaPredicted RBP33.43■■■□□ 2.94
VPS28-206ENST00000526734 CASKIN1Q8WXD9 1431 aa33.39■■■□□ 2.94
VPS28-206ENST00000526734 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.37■■■□□ 2.937e-7■■□□□ 14.3
VPS28-206ENST00000526734 CCDC18Q5T9S5 1454 aa33.35■■■□□ 2.93
VPS28-206ENST00000526734 PCF11O94913 1555 aaKnown RBP33.33■■■□□ 2.93
VPS28-206ENST00000526734 FYCO1Q9BQS8 1478 aa33.32■■■□□ 2.92
VPS28-206ENST00000526734 CFAP74Q9C0B2 1584 aa33.31■■■□□ 2.92
VPS28-206ENST00000526734 TTC37Q6PGP7 1564 aa33.3■■■□□ 2.92
VPS28-206ENST00000526734 TROQ12816 1431 aaPredicted RBP33.29■■■□□ 2.92
VPS28-206ENST00000526734 FANCAO15360 1455 aa33.26■■■□□ 2.92
VPS28-206ENST00000526734 KIF14Q15058 1648 aa33.24■■■□□ 2.91
VPS28-206ENST00000526734 LRRIQ1Q96JM4 1722 aa33.22■■■□□ 2.91
VPS28-206ENST00000526734 PLCH2O75038 1416 aa33.21■■■□□ 2.91
VPS28-206ENST00000526734 AKNAQ7Z591 1439 aa33.2■■■□□ 2.91
VPS28-206ENST00000526734 CEP162Q5TB80 1403 aa33.19■■■□□ 2.9
VPS28-206ENST00000526734 KDM4FA0A1W2PPD8 638 aa33.18■■■□□ 2.9
VPS28-206ENST00000526734 DENND4BO75064 1496 aaPredicted RBP33.17■■■□□ 2.9
VPS28-206ENST00000526734 MYO5CQ9NQX4 1742 aa33.14■■■□□ 2.89
VPS28-206ENST00000526734 ADGRL1O94910 1474 aa33.13■■■□□ 2.89
VPS28-206ENST00000526734 RAPGEF3O95398 923 aa33.13■■■□□ 2.89
VPS28-206ENST00000526734 FRMPD1Q5SYB0 1578 aa33.13■■■□□ 2.89
VPS28-206ENST00000526734 EFCAB2Q5VUJ9 269 aa33.1■■■□□ 2.89
VPS28-206ENST00000526734 RICTORQ6R327 1708 aa33.05■■■□□ 2.88
VPS28-206ENST00000526734 ZMYM4Q5VZL5 1548 aa33.03■■■□□ 2.88
VPS28-206ENST00000526734 ARHGAP5Q13017 1502 aa33.02■■■□□ 2.88
VPS28-206ENST00000526734 SCAPERQ9BY12 1400 aa33.02■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 472.6 ms