RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 IGF1RP08069 1367 aa25.49■■□□□ 1.67
CPSF1-201ENST00000526271 ADCY10Q96PN6 1610 aa25.48■■□□□ 1.67
CPSF1-201ENST00000526271 KIAA0586Q9BVV6 1533 aa25.42■■□□□ 1.66
CPSF1-201ENST00000526271 ABCC10Q5T3U5 1492 aa25.41■■□□□ 1.66
CPSF1-201ENST00000526271 MAPKBP1O60336 1514 aa25.41■■□□□ 1.66
CPSF1-201ENST00000526271 DIP2BQ9P265 1576 aa25.4■■□□□ 1.66
CPSF1-201ENST00000526271 AEBP2Q6ZN18 517 aaPredicted RBP25.39■■□□□ 1.66
CPSF1-201ENST00000526271 CUL7Q14999 1698 aa25.39■■□□□ 1.65
CPSF1-201ENST00000526271 KIF27Q86VH2 1401 aa25.36■■□□□ 1.65
CPSF1-201ENST00000526271 FAM69CQ0P6D2 419 aa25.31■■□□□ 1.64
CPSF1-201ENST00000526271 CARMIL1Q5VZK9 1371 aa25.24■■□□□ 1.63
CPSF1-201ENST00000526271 TSPOAP1O95153 1857 aa25.22■■□□□ 1.63
CPSF1-201ENST00000526271 NPM1P06748 294 aaKnown RBP eCLIP25.18■■□□□ 1.62
CPSF1-201ENST00000526271 PTPRGP23470 1445 aa25.17■■□□□ 1.62
CPSF1-201ENST00000526271 IQGAP2Q13576 1575 aa25.15■■□□□ 1.62
CPSF1-201ENST00000526271 PPRC1Q5VV67 1664 aaKnown RBP25.15■■□□□ 1.62
CPSF1-201ENST00000526271 KDM6BO15054 1643 aa25.15■■□□□ 1.62
CPSF1-201ENST00000526271 DISP1Q96F81 1524 aa25.14■■□□□ 1.62
CPSF1-201ENST00000526271 ABCC2Q92887 1545 aa25.12■■□□□ 1.61
CPSF1-201ENST00000526271 TNIKQ9UKE5 1360 aa25.11■■□□□ 1.61
CPSF1-201ENST00000526271 TTBK1Q5TCY1 1321 aaPredicted RBP25.09■■□□□ 1.61
CPSF1-201ENST00000526271 KDM4FA0A1W2PPD8 638 aa25.07■■□□□ 1.6
CPSF1-201ENST00000526271 UHRF1BP1LA0JNW5 1464 aa25.06■■□□□ 1.6
CPSF1-201ENST00000526271 ASXL2Q76L83 1435 aa25.05■■□□□ 1.6
CPSF1-201ENST00000526271 CARMIL2Q6F5E8 1435 aa25.04■■□□□ 1.6
CPSF1-201ENST00000526271 GLI2P10070 1586 aa25.04■■□□□ 1.6
CPSF1-201ENST00000526271 UGGT2Q9NYU1 1516 aa25.02■■□□□ 1.6
CPSF1-201ENST00000526271 UACAQ9BZF9 1416 aa25■■□□□ 1.59
CPSF1-201ENST00000526271 RAPGEF2Q9Y4G8 1499 aa24.99■■□□□ 1.59
CPSF1-201ENST00000526271 KDM5BQ9UGL1 1544 aa24.98■■□□□ 1.59
CPSF1-201ENST00000526271 COL17A1Q9UMD9 1497 aaPredicted RBP24.98■■□□□ 1.59
CPSF1-201ENST00000526271 KIAA0556O60303 1618 aa24.97■■□□□ 1.59
CPSF1-201ENST00000526271 PLB1Q6P1J6 1458 aa24.97■■□□□ 1.59
CPSF1-201ENST00000526271 ZCCHC11Q5TAX3 1644 aaKnown RBP24.95■■□□□ 1.58
CPSF1-201ENST00000526271 MAP3K4Q9Y6R4 1608 aa24.94■■□□□ 1.58
CPSF1-201ENST00000526271 EPRSP07814 1512 aaKnown RBP24.93■■□□□ 1.58
CPSF1-201ENST00000526271 CTTNBP2Q8WZ74 1663 aa24.87■■□□□ 1.57
CPSF1-201ENST00000526271 ABCA8O94911 1581 aa24.8■■□□□ 1.56
CPSF1-201ENST00000526271 PRXQ9BXM0 1461 aa24.77■■□□□ 1.56
CPSF1-201ENST00000526271 ADGRL1O94910 1474 aa24.77■■□□□ 1.56
CPSF1-201ENST00000526271 WDR7Q9Y4E6 1490 aa24.76■■□□□ 1.55
CPSF1-201ENST00000526271 TEX14Q8IWB6 1497 aa24.7■■□□□ 1.54
CPSF1-201ENST00000526271 CFAP43Q8NDM7 1665 aa24.65■■□□□ 1.54
CPSF1-201ENST00000526271 GOLGA3Q08378 1498 aa24.64■■□□□ 1.54
CPSF1-201ENST00000526271 MAGI3Q5TCQ9 1506 aa24.64■■□□□ 1.53
CPSF1-201ENST00000526271 CD109Q6YHK3 1445 aa24.6■■□□□ 1.53
CPSF1-201ENST00000526271 KCNH8Q96L42 1107 aa24.56■■□□□ 1.52
CPSF1-201ENST00000526271 ATP10BO94823 1461 aa24.56■■□□□ 1.52
CPSF1-201ENST00000526271 SAMD9Q5K651 1589 aa24.54■■□□□ 1.52
CPSF1-201ENST00000526271 HECW2Q9P2P5 1572 aa24.52■■□□□ 1.52
CPSF1-201ENST00000526271 ARID3CA6NKF2 412 aa24.51■■□□□ 1.51
CPSF1-201ENST00000526271 P3H3Q8IVL6 736 aa24.51■■□□□ 1.51
CPSF1-201ENST00000526271 KIF21BO75037 1637 aa24.5■■□□□ 1.51
CPSF1-201ENST00000526271 ABCA9Q8IUA7 1624 aa24.47■■□□□ 1.51
CPSF1-201ENST00000526271 ARAP3Q8WWN8 1544 aa24.46■■□□□ 1.51
CPSF1-201ENST00000526271 ILDR1Q86SU0 546 aaPredicted RBP24.44■■□□□ 1.5
CPSF1-201ENST00000526271 RAPGEF6Q8TEU7 1601 aa24.43■■□□□ 1.5
CPSF1-201ENST00000526271 CSRNP3Q8WYN3 585 aa24.4■■□□□ 1.5
CPSF1-201ENST00000526271 NUP153P49790 1475 aaKnown RBP24.39■■□□□ 1.5
CPSF1-201ENST00000526271 FRMPD1Q5SYB0 1578 aa24.38■■□□□ 1.49
CPSF1-201ENST00000526271 FHOD3Q2V2M9 1422 aa24.33■■□□□ 1.49
CPSF1-201ENST00000526271 ADAMTSL3P82987 1691 aa24.33■■□□□ 1.49
CPSF1-201ENST00000526271 RAPGEF3O95398 923 aa24.3■■□□□ 1.48
CPSF1-201ENST00000526271 NEO1Q92859 1461 aa24.27■■□□□ 1.48
CPSF1-201ENST00000526271 PHLDB1Q86UU1 1377 aa24.24■■□□□ 1.47
CPSF1-201ENST00000526271 BCORL1Q5H9F3 1711 aa24.22■■□□□ 1.47
CPSF1-201ENST00000526271 RICTORQ6R327 1708 aa24.22■■□□□ 1.47
CPSF1-201ENST00000526271 SIGLEC1Q9BZZ2 1709 aa24.22■■□□□ 1.47
CPSF1-201ENST00000526271 RANGAP1P46060 587 aaPredicted RBP24.22■■□□□ 1.47
CPSF1-201ENST00000526271 PTPRMP28827 1452 aa24.21■■□□□ 1.47
CPSF1-201ENST00000526271 EEA1Q15075 1411 aa24.21■■□□□ 1.47
CPSF1-201ENST00000526271 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.2■■□□□ 1.46
CPSF1-201ENST00000526271 MADDQ8WXG6 1647 aa24.19■■□□□ 1.46
CPSF1-201ENST00000526271 TTC37Q6PGP7 1564 aa24.19■■□□□ 1.46
CPSF1-201ENST00000526271 ARHGEF40Q8TER5 1519 aa24.16■■□□□ 1.46
CPSF1-201ENST00000526271 FAM9AQ8IZU1 332 aaPredicted RBP24.16■■□□□ 1.46
CPSF1-201ENST00000526271 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.15■■□□□ 1.46
CPSF1-201ENST00000526271 HNRNPUL2Q1KMD3 747 aaKnown RBP24.15■■□□□ 1.46
CPSF1-201ENST00000526271 EFCAB5A4FU69 1503 aa24.14■■□□□ 1.45
CPSF1-201ENST00000526271 CDK13Q14004 1512 aaKnown RBP24.14■■□□□ 1.45
CPSF1-201ENST00000526271 AKNAQ7Z591 1439 aa24.11■■□□□ 1.45
CPSF1-201ENST00000526271 FANCAO15360 1455 aa24.09■■□□□ 1.45
CPSF1-201ENST00000526271 DENND4BO75064 1496 aaPredicted RBP24.09■■□□□ 1.45
CPSF1-201ENST00000526271 ZMYM4Q5VZL5 1548 aa24.08■■□□□ 1.45
CPSF1-201ENST00000526271 RIMS1Q86UR5 1692 aaKnown RBP24.07■■□□□ 1.44
CPSF1-201ENST00000526271 YEATS2Q9ULM3 1422 aa24.07■■□□□ 1.44
CPSF1-201ENST00000526271 PLEKHD1A6NEE1 506 aa24.06■■□□□ 1.44
CPSF1-201ENST00000526271 LMTK3Q96Q04 1460 aa24.06■■□□□ 1.44
CPSF1-201ENST00000526271 PCF11O94913 1555 aaKnown RBP24.03■■□□□ 1.44
CPSF1-201ENST00000526271 CFAP74Q9C0B2 1584 aa24.03■■□□□ 1.44
CPSF1-201ENST00000526271 HECW1Q76N89 1606 aa24.02■■□□□ 1.44
CPSF1-201ENST00000526271 LRRIQ1Q96JM4 1722 aa24.01■■□□□ 1.43
CPSF1-201ENST00000526271 ARHGAP35Q9NRY4 1499 aa24.01■■□□□ 1.43
CPSF1-201ENST00000526271 KIF14Q15058 1648 aa23.99■■□□□ 1.43
CPSF1-201ENST00000526271 ZFYVE16Q7Z3T8 1539 aa23.98■■□□□ 1.43
CPSF1-201ENST00000526271 PLCH2O75038 1416 aa23.97■■□□□ 1.43
CPSF1-201ENST00000526271 ARID4BQ4LE39 1312 aaPredicted RBP23.97■■□□□ 1.43
CPSF1-201ENST00000526271 EHMT2Q96KQ7 1210 aa23.95■■□□□ 1.42
CPSF1-201ENST00000526271 POGZQ7Z3K3 1410 aa23.94■■□□□ 1.42
CPSF1-201ENST00000526271 SCAPERQ9BY12 1400 aa23.93■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms