RNA–Protein interactions for RNA: ENST00000524330.1

VPS13B-212, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 5

Gene VPS13B, Length 218 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-212ENST00000524330 MAGI1Q96QZ7 1491 aaPredicted RBP15.37■□□□□ 0.05
VPS13B-212ENST00000524330 ARHGAP35Q9NRY4 1499 aa15.37■□□□□ 0.05
VPS13B-212ENST00000524330 EIF4G3O43432 1585 aaKnown RBP15.36■□□□□ 0.05
VPS13B-212ENST00000524330 ZNF608Q9ULD9 1512 aaPredicted RBP15.35■□□□□ 0.05
VPS13B-212ENST00000524330 SNAPC4Q5SXM2 1469 aa15.32■□□□□ 0.04
VPS13B-212ENST00000524330 FMN1Q68DA7 1419 aa15.29■□□□□ 0.04
VPS13B-212ENST00000524330 PPARGC1BQ86YN6 1023 aaKnown RBP15.28■□□□□ 0.04
VPS13B-212ENST00000524330 CHMP7Q8WUX9 453 aaPredicted RBP15.28■□□□□ 0.04
VPS13B-212ENST00000524330 SYNJ2O15056 1496 aa15.27■□□□□ 0.04
VPS13B-212ENST00000524330 IQGAP2Q13576 1575 aa15.27■□□□□ 0.03
VPS13B-212ENST00000524330 MAP3K1Q13233 1512 aa15.26■□□□□ 0.03
VPS13B-212ENST00000524330 GRIN2AQ12879 1464 aa15.26■□□□□ 0.03
VPS13B-212ENST00000524330 KIAA0586Q9BVV6 1533 aa15.24■□□□□ 0.03
VPS13B-212ENST00000524330 SAMD9Q5K651 1589 aa15.24■□□□□ 0.03
VPS13B-212ENST00000524330 FYCO1Q9BQS8 1478 aa15.21■□□□□ 0.03
VPS13B-212ENST00000524330 FHOD3Q2V2M9 1422 aa15.21■□□□□ 0.03
VPS13B-212ENST00000524330 CASKIN1Q8WXD9 1431 aa15.2■□□□□ 0.02
VPS13B-212ENST00000524330 P3H3Q8IVL6 736 aa15.2■□□□□ 0.02
VPS13B-212ENST00000524330 UGGT2Q9NYU1 1516 aa15.19■□□□□ 0.02
VPS13B-212ENST00000524330 FBLN2P98095 1184 aa15.19■□□□□ 0.02
VPS13B-212ENST00000524330 TTBK1Q5TCY1 1321 aaPredicted RBP15.18■□□□□ 0.02
VPS13B-212ENST00000524330 TIAM1Q13009 1591 aa15.16■□□□□ 0.02
VPS13B-212ENST00000524330 ATP1B4Q9UN42 357 aaPredicted RBP15.16■□□□□ 0.02
VPS13B-212ENST00000524330 PCF11O94913 1555 aaKnown RBP15.15■□□□□ 0.02
VPS13B-212ENST00000524330 ZEB1P37275 1124 aaPredicted RBP15.14■□□□□ 0.01
VPS13B-212ENST00000524330 CARMIL2Q6F5E8 1435 aa15.14■□□□□ 0.01
VPS13B-212ENST00000524330 NUP160Q12769 1436 aa15.13■□□□□ 0.01
VPS13B-212ENST00000524330 CFAP43Q8NDM7 1665 aa15.12■□□□□ 0.01
VPS13B-212ENST00000524330 HRCP23327 699 aa15.12■□□□□ 0.01
VPS13B-212ENST00000524330 CCDC18Q5T9S5 1454 aa15.11■□□□□ 0.01
VPS13B-212ENST00000524330 LRRC9Q6ZRR7 1453 aa15.09■□□□□ 0.01
VPS13B-212ENST00000524330 CEP170Q5SW79 1584 aa15.09■□□□□ 0.01
VPS13B-212ENST00000524330 HECW1Q76N89 1606 aa15.09■□□□□ 0.01
VPS13B-212ENST00000524330 KIAA0556O60303 1618 aa15.08■□□□□ 0
VPS13B-212ENST00000524330 KANK4Q5T7N3 995 aaPredicted RBP15.07■□□□□ 0
VPS13B-212ENST00000524330 JPH4Q96JJ6 628 aa15.06■□□□□ 0
VPS13B-212ENST00000524330 MTUS2Q5JR59 1369 aa15.04■□□□□ -0
VPS13B-212ENST00000524330 DISP1Q96F81 1524 aa15.02■□□□□ -0
VPS13B-212ENST00000524330 RRBP1Q9P2E9 1410 aaKnown RBP15.02■□□□□ -0
VPS13B-212ENST00000524330 CDK11AQ9UQ88 783 aaPredicted RBP15.02■□□□□ -0
VPS13B-212ENST00000524330 CHD1O14646 1710 aa15.01□□□□□ -0.01
VPS13B-212ENST00000524330 EHBP1L1Q8N3D4 1523 aa15.01□□□□□ -0.01
VPS13B-212ENST00000524330 CCNB3Q8WWL7 1395 aa15□□□□□ -0.01
VPS13B-212ENST00000524330 RAPGEF6Q8TEU7 1601 aa14.98□□□□□ -0.01
VPS13B-212ENST00000524330 EPRSP07814 1512 aaKnown RBP14.97□□□□□ -0.01
VPS13B-212ENST00000524330 SUPT6HQ7KZ85 1726 aaKnown RBP14.96□□□□□ -0.01
VPS13B-212ENST00000524330 HNRNPUL2Q1KMD3 747 aaKnown RBP14.95□□□□□ -0.02
VPS13B-212ENST00000524330 CCER1Q8TC90 406 aaPredicted RBP14.95□□□□□ -0.02
VPS13B-212ENST00000524330 PRG4Q92954 1404 aaPredicted RBP14.93□□□□□ -0.02
VPS13B-212ENST00000524330 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.93□□□□□ -0.02
VPS13B-212ENST00000524330 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.91□□□□□ -0.02
VPS13B-212ENST00000524330 SHROOM2Q13796 1616 aa14.9□□□□□ -0.02
VPS13B-212ENST00000524330 PTPRGP23470 1445 aa14.9□□□□□ -0.02
VPS13B-212ENST00000524330 LRRIQ1Q96JM4 1722 aa14.89□□□□□ -0.03
VPS13B-212ENST00000524330 NCOA2Q15596 1464 aa14.89□□□□□ -0.03
VPS13B-212ENST00000524330 PHLDB1Q86UU1 1377 aa14.88□□□□□ -0.03
VPS13B-212ENST00000524330 FAM50AQ14320 339 aaKnown RBP14.88□□□□□ -0.03
VPS13B-212ENST00000524330 NUP153P49790 1475 aaKnown RBP14.88□□□□□ -0.03
VPS13B-212ENST00000524330 MYOM3Q5VTT5 1437 aa14.86□□□□□ -0.03
VPS13B-212ENST00000524330 FGD6Q6ZV73 1430 aa14.86□□□□□ -0.03
VPS13B-212ENST00000524330 ABCA8O94911 1581 aa14.85□□□□□ -0.03
VPS13B-212ENST00000524330 CDK13Q14004 1512 aaKnown RBP14.85□□□□□ -0.03
VPS13B-212ENST00000524330 CLASP1Q7Z460 1538 aa14.85□□□□□ -0.03
VPS13B-212ENST00000524330 PLB1Q6P1J6 1458 aa14.83□□□□□ -0.03
VPS13B-212ENST00000524330 PLEKHD1A6NEE1 506 aa14.83□□□□□ -0.04
VPS13B-212ENST00000524330 TROQ12816 1431 aaPredicted RBP14.83□□□□□ -0.04
VPS13B-212ENST00000524330 MIA2Q96PC5 1412 aa14.83□□□□□ -0.04
VPS13B-212ENST00000524330 ARHGEF11O15085 1522 aa14.82□□□□□ -0.04
VPS13B-212ENST00000524330 ITGAEP38570 1179 aa14.81□□□□□ -0.04
VPS13B-212ENST00000524330 UACAQ9BZF9 1416 aa14.81□□□□□ -0.04
VPS13B-212ENST00000524330 ARID3CA6NKF2 412 aa14.79□□□□□ -0.04
VPS13B-212ENST00000524330 CLSPNQ9HAW4 1339 aa14.79□□□□□ -0.04
VPS13B-212ENST00000524330 MAGI3Q5TCQ9 1506 aa14.78□□□□□ -0.04
VPS13B-212ENST00000524330 ACIN1Q9UKV3 1341 aaKnown RBP14.78□□□□□ -0.04
VPS13B-212ENST00000524330 OSCARQ8IYS5 282 aa14.78□□□□□ -0.04
VPS13B-212ENST00000524330 PTPN23Q9H3S7 1636 aa14.77□□□□□ -0.04
VPS13B-212ENST00000524330 SETD5Q9C0A6 1442 aa14.76□□□□□ -0.05
VPS13B-212ENST00000524330 ITSN2Q9NZM3 1697 aa14.76□□□□□ -0.05
VPS13B-212ENST00000524330 ADCY10Q96PN6 1610 aa14.76□□□□□ -0.05
VPS13B-212ENST00000524330 TCOF1Q13428 1488 aaKnown RBP14.76□□□□□ -0.05
VPS13B-212ENST00000524330 ATP10BO94823 1461 aa14.75□□□□□ -0.05
VPS13B-212ENST00000524330 KIF14Q15058 1648 aa14.74□□□□□ -0.05
VPS13B-212ENST00000524330 ABCC2Q92887 1545 aa14.74□□□□□ -0.05
VPS13B-212ENST00000524330 UHRF1BP1LA0JNW5 1464 aa14.73□□□□□ -0.05
VPS13B-212ENST00000524330 CFDP1Q9UEE9 299 aaPredicted RBP14.69□□□□□ -0.06
VPS13B-212ENST00000524330 RAB3GAP2Q9H2M9 1393 aa14.68□□□□□ -0.06
VPS13B-212ENST00000524330 AKNAQ7Z591 1439 aa14.66□□□□□ -0.06
VPS13B-212ENST00000524330 ERCC6L2Q5T890 1561 aa14.66□□□□□ -0.06
VPS13B-212ENST00000524330 HFM1A2PYH4 1435 aa14.65□□□□□ -0.06
VPS13B-212ENST00000524330 DHX57Q6P158 1386 aaKnown RBP14.64□□□□□ -0.07
VPS13B-212ENST00000524330 GPATCH8Q9UKJ3 1502 aaKnown RBP14.64□□□□□ -0.07
VPS13B-212ENST00000524330 KDM5BQ9UGL1 1544 aa14.62□□□□□ -0.07
VPS13B-212ENST00000524330 NPM1P06748 294 aaKnown RBP eCLIP14.62□□□□□ -0.07
VPS13B-212ENST00000524330 ABCC10Q5T3U5 1492 aa14.62□□□□□ -0.07
VPS13B-212ENST00000524330 ROCK1Q13464 1354 aa14.61□□□□□ -0.07
VPS13B-212ENST00000524330 RSPH4AQ5TD94 716 aa14.61□□□□□ -0.07
VPS13B-212ENST00000524330 DNMT1P26358 1616 aaKnown RBP14.61□□□□□ -0.07
VPS13B-212ENST00000524330 DAPK1P53355 1430 aa14.6□□□□□ -0.07
VPS13B-212ENST00000524330 CAMSAP2Q08AD1 1489 aa14.6□□□□□ -0.07
VPS13B-212ENST00000524330 ZCCHC11Q5TAX3 1644 aaKnown RBP14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 173.3 ms