RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 TMC1Q8TDI8 760 aa15.96■□□□□ 0.15
SYNPO-204ENST00000519664 CHMP7Q8WUX9 453 aaPredicted RBP15.95■□□□□ 0.14
SYNPO-204ENST00000519664 WIZO95785 1651 aa15.94■□□□□ 0.14
SYNPO-204ENST00000519664 EIF4G2P78344 907 aaKnown RBP eCLIP15.94■□□□□ 0.14
SYNPO-204ENST00000519664 TSPY4P0CV99 314 aa15.92■□□□□ 0.14
SYNPO-204ENST00000519664 TSPY10P0CW01 314 aa15.92■□□□□ 0.14
SYNPO-204ENST00000519664 CANXP27824 592 aaKnown RBP15.92■□□□□ 0.14
SYNPO-204ENST00000519664 SENP3Q9H4L4 574 aaPredicted RBP15.92■□□□□ 0.14
SYNPO-204ENST00000519664 RGL3Q3MIN7 710 aa15.9■□□□□ 0.14
SYNPO-204ENST00000519664 RUSC2Q8N2Y8 1516 aa15.88■□□□□ 0.13
SYNPO-204ENST00000519664 CCNB3Q8WWL7 1395 aa15.88■□□□□ 0.13
SYNPO-204ENST00000519664 CCDC136Q96JN2 1154 aa15.87■□□□□ 0.13
SYNPO-204ENST00000519664 SUPT16HQ9Y5B9 1047 aaKnown RBP15.87■□□□□ 0.13
SYNPO-204ENST00000519664 KCNH8Q96L42 1107 aa15.87■□□□□ 0.13
SYNPO-204ENST00000519664 ANP32AP39687 249 aaKnown RBP15.86■□□□□ 0.13
SYNPO-204ENST00000519664 VPS8Q8N3P4 1428 aa15.84■□□□□ 0.13
SYNPO-204ENST00000519664 CARMIL1Q5VZK9 1371 aa15.84■□□□□ 0.13
SYNPO-204ENST00000519664 CUX2O14529 1486 aa15.84■□□□□ 0.13
SYNPO-204ENST00000519664 CFDP1Q9UEE9 299 aaPredicted RBP15.8■□□□□ 0.12
SYNPO-204ENST00000519664 SLC24A1O60721 1099 aa15.8■□□□□ 0.12
SYNPO-204ENST00000519664 NBR1Q14596 966 aa15.79■□□□□ 0.12
SYNPO-204ENST00000519664 FOXD1Q16676 465 aa15.79■□□□□ 0.12
SYNPO-204ENST00000519664 PLEKHD1A6NEE1 506 aa15.77■□□□□ 0.12
SYNPO-204ENST00000519664 PLPPR3Q6T4P5 718 aa15.75■□□□□ 0.11
SYNPO-204ENST00000519664 RAPGEF2Q9Y4G8 1499 aa15.73■□□□□ 0.11
SYNPO-204ENST00000519664 RAB3GAP2Q9H2M9 1393 aa15.7■□□□□ 0.1
SYNPO-204ENST00000519664 TDRD9Q8NDG6 1382 aaKnown RBP15.7■□□□□ 0.1
SYNPO-204ENST00000519664 CARD11Q9BXL7 1154 aa15.7■□□□□ 0.1
SYNPO-204ENST00000519664 WDR43Q15061 677 aaKnown RBP eCLIP15.68■□□□□ 0.1
SYNPO-204ENST00000519664 NEFMP07197 916 aa15.68■□□□□ 0.1
SYNPO-204ENST00000519664 ZBTB47Q9UFB7 747 aaPredicted RBP15.67■□□□□ 0.1
SYNPO-204ENST00000519664 STAG3Q9UJ98 1225 aa15.67■□□□□ 0.1
SYNPO-204ENST00000519664 TOP2AP11388 1531 aaKnown RBP15.67■□□□□ 0.1
SYNPO-204ENST00000519664 SETD5Q9C0A6 1442 aa15.66■□□□□ 0.1
SYNPO-204ENST00000519664 NPM1P06748 294 aaKnown RBP eCLIP15.66■□□□□ 0.1
SYNPO-204ENST00000519664 FHAD1B1AJZ9 1412 aa15.65■□□□□ 0.1
SYNPO-204ENST00000519664 B4GALNT3Q6L9W6 998 aa15.65■□□□□ 0.1
SYNPO-204ENST00000519664 HSPA5P11021 654 aaKnown RBP15.62■□□□□ 0.09
SYNPO-204ENST00000519664 EIF4G1Q04637 1599 aaKnown RBP15.61■□□□□ 0.09
SYNPO-204ENST00000519664 EIF5BO60841 1220 aaKnown RBP15.6■□□□□ 0.09
SYNPO-204ENST00000519664 DCAF11Q8TEB1 546 aa15.6■□□□□ 0.09
SYNPO-204ENST00000519664 PPP1R15AO75807 674 aaPredicted RBP15.59■□□□□ 0.09
SYNPO-204ENST00000519664 CC2D1BQ5T0F9 858 aaKnown RBP15.57■□□□□ 0.08
SYNPO-204ENST00000519664 ATAD2BQ9ULI0 1458 aa15.57■□□□□ 0.08
SYNPO-204ENST00000519664 FHOD3Q2V2M9 1422 aa15.56■□□□□ 0.08
SYNPO-204ENST00000519664 NEUROD2Q15784 382 aa15.56■□□□□ 0.08
SYNPO-204ENST00000519664 ARXQ96QS3 562 aa15.56■□□□□ 0.08
SYNPO-204ENST00000519664 ESF1Q9H501 851 aaKnown RBP15.56■□□□□ 0.08
SYNPO-204ENST00000519664 DHX57Q6P158 1386 aaKnown RBP15.55■□□□□ 0.08
SYNPO-204ENST00000519664 SMARCA2P51531 1590 aa15.54■□□□□ 0.08
SYNPO-204ENST00000519664 ARHGAP35Q9NRY4 1499 aa15.53■□□□□ 0.08
SYNPO-204ENST00000519664 PKD2Q13563 968 aa15.53■□□□□ 0.08
SYNPO-204ENST00000519664 SMARCA4P51532 1647 aa15.53■□□□□ 0.08
SYNPO-204ENST00000519664 TNNT2P45379 298 aaPredicted RBP15.53■□□□□ 0.08
SYNPO-204ENST00000519664 MPHOSPH9Q99550 1183 aa15.53■□□□□ 0.08
SYNPO-204ENST00000519664 TIMELESSQ9UNS1 1208 aa15.53■□□□□ 0.08
SYNPO-204ENST00000519664 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.51■□□□□ 0.07
SYNPO-204ENST00000519664 GLIPR1L2Q4G1C9 344 aa15.51■□□□□ 0.07
SYNPO-204ENST00000519664 L3MBTL2Q969R5 705 aa15.51■□□□□ 0.07
SYNPO-204ENST00000519664 KNSTRNQ9Y448 316 aa15.51■□□□□ 0.07
SYNPO-204ENST00000519664 PPP4R2Q9NY27 417 aa15.5■□□□□ 0.07
SYNPO-204ENST00000519664 CCER2I3L3R5 266 aa15.48■□□□□ 0.07
SYNPO-204ENST00000519664 PLEKHG5O94827 1062 aa15.48■□□□□ 0.07
SYNPO-204ENST00000519664 CADPSQ9ULU8 1353 aa15.48■□□□□ 0.07
SYNPO-204ENST00000519664 HSP90AA1P07900 732 aaKnown RBP15.47■□□□□ 0.07
SYNPO-204ENST00000519664 RBM19Q9Y4C8 960 aaKnown RBP15.47■□□□□ 0.07
SYNPO-204ENST00000519664 UPF2Q9HAU5 1272 aaKnown RBP15.46■□□□□ 0.07
SYNPO-204ENST00000519664 PPM1GO15355 546 aaPredicted RBP15.44■□□□□ 0.06
SYNPO-204ENST00000519664 ERCC6Q03468 1493 aa15.43■□□□□ 0.06
SYNPO-204ENST00000519664 RGS3P49796 1198 aa15.43■□□□□ 0.06
SYNPO-204ENST00000519664 TSHZ2Q9NRE2 1034 aa15.43■□□□□ 0.06
SYNPO-204ENST00000519664 FMN1Q68DA7 1419 aa15.4■□□□□ 0.06
SYNPO-204ENST00000519664 LAS1LQ9Y4W2 734 aaKnown RBP15.4■□□□□ 0.06
SYNPO-204ENST00000519664 FRAT1Q92837 279 aaPredicted RBP15.38■□□□□ 0.05
SYNPO-204ENST00000519664 NUP155O75694 1391 aa15.38■□□□□ 0.05
SYNPO-204ENST00000519664 HNRNPMP52272 730 aaKnown RBP eCLIP15.38■□□□□ 0.05
SYNPO-204ENST00000519664 IGF1RP08069 1367 aa15.37■□□□□ 0.05
SYNPO-204ENST00000519664 SAFB2Q14151 953 aaKnown RBP eCLIP15.37■□□□□ 0.05
SYNPO-204ENST00000519664 CDCA8Q53HL2 280 aa15.33■□□□□ 0.05
SYNPO-204ENST00000519664 TMF1P82094 1093 aa15.33■□□□□ 0.04
SYNPO-204ENST00000519664 PDS5BQ9NTI5 1447 aa15.32■□□□□ 0.04
SYNPO-204ENST00000519664 GGT6Q6P531 493 aa15.3■□□□□ 0.04
SYNPO-204ENST00000519664 PHLDB1Q86UU1 1377 aa15.3■□□□□ 0.04
SYNPO-204ENST00000519664 U2SURPO15042 1029 aaKnown RBP15.29■□□□□ 0.04
SYNPO-204ENST00000519664 ZNF644Q9H582 1327 aaPredicted RBP15.29■□□□□ 0.04
SYNPO-204ENST00000519664 RAD54L2Q9Y4B4 1467 aa15.28■□□□□ 0.04
SYNPO-204ENST00000519664 ZBTB7CA1YPR0 619 aa15.28■□□□□ 0.04
SYNPO-204ENST00000519664 NOP58Q9Y2X3 529 aaKnown RBP15.28■□□□□ 0.04
SYNPO-204ENST00000519664 KIF21BO75037 1637 aa15.28■□□□□ 0.04
SYNPO-204ENST00000519664 CFAP53Q96M91 514 aa15.28■□□□□ 0.04
SYNPO-204ENST00000519664 ST20-MTHFSA0A0A6YYL1 179 aa15.27■□□□□ 0.04
SYNPO-204ENST00000519664 JPH4Q96JJ6 628 aa15.27■□□□□ 0.04
SYNPO-204ENST00000519664 DEKP35659 375 aaKnown RBP15.27■□□□□ 0.04
SYNPO-204ENST00000519664 C14orf37Q86TY3 774 aa15.26■□□□□ 0.03
SYNPO-204ENST00000519664 FANCD2Q9BXW9 1451 aa15.26■□□□□ 0.03
SYNPO-204ENST00000519664 RTN4Q9NQC3 1192 aaKnown RBP15.25■□□□□ 0.03
SYNPO-204ENST00000519664 ROCK2O75116 1388 aaKnown RBP15.25■□□□□ 0.03
SYNPO-204ENST00000519664 POGKQ9P215 609 aa15.25■□□□□ 0.03
SYNPO-204ENST00000519664 FTSJ3Q8IY81 847 aaKnown RBP15.25■□□□□ 0.03
SYNPO-204ENST00000519664 ARAP1Q96P48 1450 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms