RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 PABPN1Q86U42 306 aaKnown RBP eCLIP9□□□□□ -0.97
CPNE3-204ENST00000517862 PHF12Q96QT6 1004 aa8.96□□□□□ -0.98
CPNE3-204ENST00000517862 ATMINO43313 823 aaPredicted RBP8.94□□□□□ -0.98
CPNE3-204ENST00000517862 ST18O60284 1047 aa8.9□□□□□ -0.98
CPNE3-204ENST00000517862 ILDR1Q86SU0 546 aaPredicted RBP8.9□□□□□ -0.98
CPNE3-204ENST00000517862 NISCHQ9Y2I1 1504 aa8.87□□□□□ -0.99
CPNE3-204ENST00000517862 FOXD4L1Q9NU39 408 aa8.84□□□□□ -0.99
CPNE3-204ENST00000517862 MKRN4PQ13434 485 aaPredicted RBP8.83□□□□□ -1
CPNE3-204ENST00000517862 MS4A3Q96HJ5 214 aa8.81□□□□□ -1
CPNE3-204ENST00000517862 TMEM121BQ9BXQ6 578 aaPredicted RBP8.78□□□□□ -1
CPNE3-204ENST00000517862 ATN1P54259 1190 aaPredicted RBP8.77□□□□□ -1.01
CPNE3-204ENST00000517862 POTEFA5A3E0 1075 aa8.75□□□□□ -1.01
CPNE3-204ENST00000517862 CREBZFQ9NS37 354 aa8.75□□□□□ -1.01
CPNE3-204ENST00000517862 SLAIN1Q8ND83 568 aa8.74□□□□□ -1.01
CPNE3-204ENST00000517862 SEC24BO95487 1268 aa8.72□□□□□ -1.01
CPNE3-204ENST00000517862 ATXN8OSP0DMR3 200 aa8.69□□□□□ -1.02
CPNE3-204ENST00000517862 NPM1P06748 294 aaKnown RBP eCLIP8.68□□□□□ -1.02
CPNE3-204ENST00000517862 CECR2Q9BXF3 1484 aa8.68□□□□□ -1.02
CPNE3-204ENST00000517862 CUX2O14529 1486 aa8.66□□□□□ -1.02
CPNE3-204ENST00000517862 MARVELD3Q96A59 401 aa8.64□□□□□ -1.03
CPNE3-204ENST00000517862 SNPHO15079 494 aa8.63□□□□□ -1.03
CPNE3-204ENST00000517862 COLQQ9Y215 455 aaPredicted RBP8.61□□□□□ -1.03
CPNE3-204ENST00000517862 BMP2KQ9NSY1 1161 aaPredicted RBP8.59□□□□□ -1.03
CPNE3-204ENST00000517862 STAG3Q9UJ98 1225 aa8.58□□□□□ -1.04
CPNE3-204ENST00000517862 KRTAP3-3Q9BYR6 98 aa8.56□□□□□ -1.04
CPNE3-204ENST00000517862 KRTAP3-2Q9BYR7 98 aa8.56□□□□□ -1.04
CPNE3-204ENST00000517862 EMP3P54852 163 aa8.54□□□□□ -1.04
CPNE3-204ENST00000517862 TIE1P35590 1138 aa8.53□□□□□ -1.04
CPNE3-204ENST00000517862 RNF166Q96A37 237 aaPredicted RBP8.53□□□□□ -1.04
CPNE3-204ENST00000517862 CC2D2AQ9P2K1 1620 aa8.51□□□□□ -1.05
CPNE3-204ENST00000517862 IER5LQ5T953 404 aa8.5□□□□□ -1.05
CPNE3-204ENST00000517862 RB1CC1Q8TDY2 1594 aa8.48□□□□□ -1.05
CPNE3-204ENST00000517862 HS3ST6Q96QI5 342 aa8.48□□□□□ -1.05
CPNE3-204ENST00000517862 FAM205CA6NFA0 338 aa8.44□□□□□ -1.06
CPNE3-204ENST00000517862 TRPC6Q9Y210 931 aa8.44□□□□□ -1.06
CPNE3-204ENST00000517862 TSPYL2Q9H2G4 693 aaPredicted RBP8.43□□□□□ -1.06
CPNE3-204ENST00000517862 TTLL13PA6NNM8 815 aa8.42□□□□□ -1.06
CPNE3-204ENST00000517862 KIF12Q96FN5 646 aa8.42□□□□□ -1.06
CPNE3-204ENST00000517862 MNX1P50219 401 aaPredicted RBP8.41□□□□□ -1.06
CPNE3-204ENST00000517862 TRIM35Q9UPQ4 493 aa8.4□□□□□ -1.06
CPNE3-204ENST00000517862 CCDC61Q9Y6R9 512 aa8.39□□□□□ -1.07
CPNE3-204ENST00000517862 POTEB3A0JP26 581 aa8.38□□□□□ -1.07
CPNE3-204ENST00000517862 PLCG2P16885 1265 aa8.38□□□□□ -1.07
CPNE3-204ENST00000517862 POTEBQ6S5H4 581 aa8.38□□□□□ -1.07
CPNE3-204ENST00000517862 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.38□□□□□ -1.07
CPNE3-204ENST00000517862 MYT1LQ9UL68 1186 aa8.37□□□□□ -1.07
CPNE3-204ENST00000517862 SLC4A1APQ9BWU0 796 aaKnown RBP8.36□□□□□ -1.07
CPNE3-204ENST00000517862 SOCS7O14512 581 aa8.35□□□□□ -1.07
CPNE3-204ENST00000517862 LMTK3Q96Q04 1460 aa8.33□□□□□ -1.08
CPNE3-204ENST00000517862 UNC13AQ9UPW8 1703 aa8.32□□□□□ -1.08
CPNE3-204ENST00000517862 MAP3K13O43283 966 aa8.32□□□□□ -1.08
CPNE3-204ENST00000517862 ERCC6Q03468 1493 aa8.31□□□□□ -1.08
CPNE3-204ENST00000517862 CCDC180Q9P1Z9 1646 aa8.27□□□□□ -1.09
CPNE3-204ENST00000517862 BICRAQ9NZM4 1560 aa8.27□□□□□ -1.09
CPNE3-204ENST00000517862 ZBTB22O15209 634 aa8.21□□□□□ -1.1
CPNE3-204ENST00000517862 PTGER2P43116 358 aa8.21□□□□□ -1.1
CPNE3-204ENST00000517862 IRX5P78411 483 aaPredicted RBP8.2□□□□□ -1.1
CPNE3-204ENST00000517862 EHMT2Q96KQ7 1210 aa8.2□□□□□ -1.1
CPNE3-204ENST00000517862 ILDR2Q71H61 639 aa8.19□□□□□ -1.1
CPNE3-204ENST00000517862 PLA2G2EQ9NZK7 142 aa8.19□□□□□ -1.1
CPNE3-204ENST00000517862 OCEL1Q9H607 264 aa8.18□□□□□ -1.1
CPNE3-204ENST00000517862 EIF4G1Q04637 1599 aaKnown RBP8.18□□□□□ -1.1
CPNE3-204ENST00000517862 C3orf67Q6ZVT6 689 aa8.17□□□□□ -1.1
CPNE3-204ENST00000517862 SGIP1Q9BQI5 828 aa8.15□□□□□ -1.1
CPNE3-204ENST00000517862 FBXO41Q8TF61 875 aa8.14□□□□□ -1.11
CPNE3-204ENST00000517862 ERBB3P21860 1342 aa8.13□□□□□ -1.11
CPNE3-204ENST00000517862 TMEM106CQ9BVX2 250 aa8.13□□□□□ -1.11
CPNE3-204ENST00000517862 PCDHB13Q9Y5F0 798 aa8.13□□□□□ -1.11
CPNE3-204ENST00000517862 RIMBP3CA6NJZ7 1639 aa8.12□□□□□ -1.11
CPNE3-204ENST00000517862 RIMBP3BA6NNM3 1639 aa8.12□□□□□ -1.11
CPNE3-204ENST00000517862 RIMBP3Q9UFD9 1639 aa8.12□□□□□ -1.11
CPNE3-204ENST00000517862 NACADO15069 1562 aa8.11□□□□□ -1.11
CPNE3-204ENST00000517862 IRX2Q9BZI1 471 aaPredicted RBP8.05□□□□□ -1.12
CPNE3-204ENST00000517862 DISP3Q9P2K9 1392 aa8.03□□□□□ -1.12
CPNE3-204ENST00000517862 HOXB1P14653 301 aaPredicted RBP8.03□□□□□ -1.12
CPNE3-204ENST00000517862 ZNF710Q8N1W2 664 aa8.03□□□□□ -1.12
CPNE3-204ENST00000517862 CYB5RLQ6IPT4 315 aa8.02□□□□□ -1.13
CPNE3-204ENST00000517862 VARS2Q5ST30 1063 aaKnown RBP8.01□□□□□ -1.13
CPNE3-204ENST00000517862 L3MBTL3Q96JM7 780 aaPredicted RBP8.01□□□□□ -1.13
CPNE3-204ENST00000517862 BAZ1AQ9NRL2 1556 aaPredicted RBP8.01□□□□□ -1.13
CPNE3-204ENST00000517862 IFNL1Q8IU54 200 aa8□□□□□ -1.13
CPNE3-204ENST00000517862 RASEFQ8IZ41 740 aa7.99□□□□□ -1.13
CPNE3-204ENST00000517862 SHROOM4Q9ULL8 1493 aa7.99□□□□□ -1.13
CPNE3-204ENST00000517862 ZNF687Q8N1G0 1237 aa7.97□□□□□ -1.13
CPNE3-204ENST00000517862 ERCC6L2Q5T890 1561 aa7.97□□□□□ -1.13
CPNE3-204ENST00000517862 HCSTQ9UBK5 93 aa7.96□□□□□ -1.14
CPNE3-204ENST00000517862 ARHGEF11O15085 1522 aa7.95□□□□□ -1.14
CPNE3-204ENST00000517862 ANKRD13DQ6ZTN6 518 aa7.95□□□□□ -1.14
CPNE3-204ENST00000517862 THOC2Q8NI27 1593 aaKnown RBP7.95□□□□□ -1.14
CPNE3-204ENST00000517862 SPDYE4A6NLX3 237 aa7.94□□□□□ -1.14
CPNE3-204ENST00000517862 PLEKHG5O94827 1062 aa7.94□□□□□ -1.14
CPNE3-204ENST00000517862 HOXB3P14651 431 aaPredicted RBP7.93□□□□□ -1.14
CPNE3-204ENST00000517862 DOK7Q18PE1 504 aa7.93□□□□□ -1.14
CPNE3-204ENST00000517862 DCAF8L2P0C7V8 631 aa7.92□□□□□ -1.14
CPNE3-204ENST00000517862 RGS20O76081 388 aa7.91□□□□□ -1.14
CPNE3-204ENST00000517862 RIMBP2O15034 1052 aa7.9□□□□□ -1.14
CPNE3-204ENST00000517862 KDM4FA0A1W2PPD8 638 aa7.88□□□□□ -1.15
CPNE3-204ENST00000517862 PDCD7Q8N8D1 485 aaKnown RBP7.88□□□□□ -1.15
CPNE3-204ENST00000517862 CSRNP3Q8WYN3 585 aa7.83□□□□□ -1.16
CPNE3-204ENST00000517862 HECW2Q9P2P5 1572 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms