RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 CARMIL1Q5VZK9 1371 aa23.4■■□□□ 1.34
TCOF1-215ENST00000515516 CUL7Q14999 1698 aa23.39■■□□□ 1.34
TCOF1-215ENST00000515516 KIAA0586Q9BVV6 1533 aa23.36■■□□□ 1.33
TCOF1-215ENST00000515516 RUSC2Q8N2Y8 1516 aa23.35■■□□□ 1.33
TCOF1-215ENST00000515516 NPM1P06748 294 aaKnown RBP eCLIP23.29■■□□□ 1.32
TCOF1-215ENST00000515516 RAPGEF2Q9Y4G8 1499 aa23.19■■□□□ 1.3
TCOF1-215ENST00000515516 CARMIL2Q6F5E8 1435 aa23.19■■□□□ 1.3
TCOF1-215ENST00000515516 TTBK1Q5TCY1 1321 aaPredicted RBP23.17■■□□□ 1.3
TCOF1-215ENST00000515516 PTPRGP23470 1445 aa23.16■■□□□ 1.3
TCOF1-215ENST00000515516 TNIKQ9UKE5 1360 aa23.13■■□□□ 1.29
TCOF1-215ENST00000515516 IQGAP2Q13576 1575 aa23.12■■□□□ 1.29
TCOF1-215ENST00000515516 FAM69CQ0P6D2 419 aa23.08■■□□□ 1.29
TCOF1-215ENST00000515516 ADCY10Q96PN6 1610 aa23.04■■□□□ 1.28
TCOF1-215ENST00000515516 MAPKBP1O60336 1514 aa23.02■■□□□ 1.28
TCOF1-215ENST00000515516 ABCC10Q5T3U5 1492 aa23.01■■□□□ 1.27
TCOF1-215ENST00000515516 DISP1Q96F81 1524 aa22.99■■□□□ 1.27
TCOF1-215ENST00000515516 UGGT2Q9NYU1 1516 aa22.99■■□□□ 1.27
TCOF1-215ENST00000515516 PRXQ9BXM0 1461 aa22.97■■□□□ 1.27
TCOF1-215ENST00000515516 CSRNP3Q8WYN3 585 aa22.96■■□□□ 1.27
TCOF1-215ENST00000515516 UACAQ9BZF9 1416 aa22.96■■□□□ 1.27
TCOF1-215ENST00000515516 ABCC2Q92887 1545 aa22.94■■□□□ 1.26
TCOF1-215ENST00000515516 UHRF1BP1LA0JNW5 1464 aa22.92■■□□□ 1.26
TCOF1-215ENST00000515516 FAM9AQ8IZU1 332 aaPredicted RBP22.91■■□□□ 1.26
TCOF1-215ENST00000515516 GOLGA3Q08378 1498 aa22.91■■□□□ 1.26
TCOF1-215ENST00000515516 KIF13AQ9H1H9 1805 aa22.89■■□□□ 1.26
TCOF1-215ENST00000515516 KIAA0556O60303 1618 aa22.89■■□□□ 1.25
TCOF1-215ENST00000515516 DIP2BQ9P265 1576 aa22.89■■□□□ 1.25
TCOF1-215ENST00000515516 PLB1Q6P1J6 1458 aa22.87■■□□□ 1.25
TCOF1-215ENST00000515516 EEA1Q15075 1411 aa22.86■■□□□ 1.25
TCOF1-215ENST00000515516 ASXL2Q76L83 1435 aa22.86■■□□□ 1.25
TCOF1-215ENST00000515516 AEBP2Q6ZN18 517 aaPredicted RBP22.83■■□□□ 1.25
TCOF1-215ENST00000515516 CTTNBP2Q8WZ74 1663 aa22.83■■□□□ 1.24
TCOF1-215ENST00000515516 KDM5BQ9UGL1 1544 aa22.8■■□□□ 1.24
TCOF1-215ENST00000515516 P3H3Q8IVL6 736 aa22.77■■□□□ 1.24
TCOF1-215ENST00000515516 GLI2P10070 1586 aa22.71■■□□□ 1.23
TCOF1-215ENST00000515516 RANGAP1P46060 587 aaPredicted RBP22.7■■□□□ 1.22
TCOF1-215ENST00000515516 EPRSP07814 1512 aaKnown RBP22.7■■□□□ 1.22
TCOF1-215ENST00000515516 ZCCHC11Q5TAX3 1644 aaKnown RBP22.69■■□□□ 1.22
TCOF1-215ENST00000515516 CHIC1Q5VXU3 224 aa22.69■■□□□ 1.22
TCOF1-215ENST00000515516 KDM6BO15054 1643 aa22.67■■□□□ 1.22
TCOF1-215ENST00000515516 ABCA8O94911 1581 aa22.67■■□□□ 1.22
TCOF1-215ENST00000515516 WDR7Q9Y4E6 1490 aa22.66■■□□□ 1.22
TCOF1-215ENST00000515516 TSPOAP1O95153 1857 aa22.66■■□□□ 1.22
TCOF1-215ENST00000515516 KCNH8Q96L42 1107 aa22.66■■□□□ 1.22
TCOF1-215ENST00000515516 ARID3CA6NKF2 412 aa22.63■■□□□ 1.21
TCOF1-215ENST00000515516 TEX14Q8IWB6 1497 aa22.6■■□□□ 1.21
TCOF1-215ENST00000515516 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.58■■□□□ 1.21
TCOF1-215ENST00000515516 UBTFP17480 764 aaKnown RBP22.58■■□□□ 1.21
TCOF1-215ENST00000515516 HNRNPUL2Q1KMD3 747 aaKnown RBP22.58■■□□□ 1.21
TCOF1-215ENST00000515516 EHMT2Q96KQ7 1210 aa22.57■■□□□ 1.2
TCOF1-215ENST00000515516 SAMD9Q5K651 1589 aa22.57■■□□□ 1.2
TCOF1-215ENST00000515516 KIF21BO75037 1637 aa22.55■■□□□ 1.2
TCOF1-215ENST00000515516 CD109Q6YHK3 1445 aa22.55■■□□□ 1.2
TCOF1-215ENST00000515516 ATP10BO94823 1461 aa22.54■■□□□ 1.2
TCOF1-215ENST00000515516 MAP3K4Q9Y6R4 1608 aa22.54■■□□□ 1.2
TCOF1-215ENST00000515516 FHOD3Q2V2M9 1422 aa22.52■■□□□ 1.2
TCOF1-215ENST00000515516 PPRC1Q5VV67 1664 aaKnown RBP22.51■■□□□ 1.19
TCOF1-215ENST00000515516 RAPGEF6Q8TEU7 1601 aa22.47■■□□□ 1.19
TCOF1-215ENST00000515516 MAGI3Q5TCQ9 1506 aa22.47■■□□□ 1.19
TCOF1-215ENST00000515516 EFCAB5A4FU69 1503 aa22.46■■□□□ 1.19
TCOF1-215ENST00000515516 COL17A1Q9UMD9 1497 aaPredicted RBP22.45■■□□□ 1.18
TCOF1-215ENST00000515516 PLEKHD1A6NEE1 506 aa22.43■■□□□ 1.18
TCOF1-215ENST00000515516 CFAP43Q8NDM7 1665 aa22.42■■□□□ 1.18
TCOF1-215ENST00000515516 NUP153P49790 1475 aaKnown RBP22.41■■□□□ 1.18
TCOF1-215ENST00000515516 KDM4FA0A1W2PPD8 638 aa22.41■■□□□ 1.18
TCOF1-215ENST00000515516 ATP1B4Q9UN42 357 aaPredicted RBP22.37■■□□□ 1.17
TCOF1-215ENST00000515516 PHLDB1Q86UU1 1377 aa22.35■■□□□ 1.17
TCOF1-215ENST00000515516 FMN1Q68DA7 1419 aa22.32■■□□□ 1.16
TCOF1-215ENST00000515516 ABCA9Q8IUA7 1624 aa22.31■■□□□ 1.16
TCOF1-215ENST00000515516 ARHGAP35Q9NRY4 1499 aa22.28■■□□□ 1.16
TCOF1-215ENST00000515516 ARAP3Q8WWN8 1544 aa22.27■■□□□ 1.16
TCOF1-215ENST00000515516 CDK11AQ9UQ88 783 aaPredicted RBP22.27■■□□□ 1.16
TCOF1-215ENST00000515516 ADGRL1O94910 1474 aa22.25■■□□□ 1.15
TCOF1-215ENST00000515516 NEO1Q92859 1461 aa22.25■■□□□ 1.15
TCOF1-215ENST00000515516 RAPGEF3O95398 923 aa22.22■■□□□ 1.15
TCOF1-215ENST00000515516 CDK13Q14004 1512 aaKnown RBP22.21■■□□□ 1.15
TCOF1-215ENST00000515516 HECW1Q76N89 1606 aa22.19■■□□□ 1.14
TCOF1-215ENST00000515516 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.16■■□□□ 1.14
TCOF1-215ENST00000515516 FANCAO15360 1455 aa22.15■■□□□ 1.14
TCOF1-215ENST00000515516 AKNAQ7Z591 1439 aa22.14■■□□□ 1.14
TCOF1-215ENST00000515516 DENND4BO75064 1496 aaPredicted RBP22.12■■□□□ 1.13
TCOF1-215ENST00000515516 CLIP1P30622 1438 aa22.11■■□□□ 1.13
TCOF1-215ENST00000515516 PLCH2O75038 1416 aa22.09■■□□□ 1.13
TCOF1-215ENST00000515516 EFCAB2Q5VUJ9 269 aa22.09■■□□□ 1.13
TCOF1-215ENST00000515516 ARID4BQ4LE39 1312 aaPredicted RBP22.08■■□□□ 1.13
TCOF1-215ENST00000515516 TTC37Q6PGP7 1564 aa22.08■■□□□ 1.13
TCOF1-215ENST00000515516 CFAP74Q9C0B2 1584 aa22.08■■□□□ 1.13
TCOF1-215ENST00000515516 TROQ12816 1431 aaPredicted RBP22.07■■□□□ 1.12
TCOF1-215ENST00000515516 CASKIN1Q8WXD9 1431 aa22.07■■□□□ 1.12
TCOF1-215ENST00000515516 CCDC18Q5T9S5 1454 aa22.03■■□□□ 1.12
TCOF1-215ENST00000515516 SCAPERQ9BY12 1400 aa22.02■■□□□ 1.12
TCOF1-215ENST00000515516 FRMPD1Q5SYB0 1578 aa22.01■■□□□ 1.11
TCOF1-215ENST00000515516 KIF14Q15058 1648 aa22.01■■□□□ 1.11
TCOF1-215ENST00000515516 PCF11O94913 1555 aaKnown RBP21.98■■□□□ 1.11
TCOF1-215ENST00000515516 FYCO1Q9BQS8 1478 aa21.97■■□□□ 1.11
TCOF1-215ENST00000515516 MAGI2Q86UL8 1455 aa21.96■■□□□ 1.11
TCOF1-215ENST00000515516 ARHGAP5Q13017 1502 aa21.96■■□□□ 1.11
TCOF1-215ENST00000515516 POGZQ7Z3K3 1410 aa21.95■■□□□ 1.1
TCOF1-215ENST00000515516 MYT1LQ9UL68 1186 aa21.94■■□□□ 1.1
TCOF1-215ENST00000515516 RICTORQ6R327 1708 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms