RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 RUSC2Q8N2Y8 1516 aa19.49■□□□□ 0.71
LIMCH1-214ENST00000512228 CARMIL1Q5VZK9 1371 aa19.43■□□□□ 0.7
LIMCH1-214ENST00000512228 KIAA0586Q9BVV6 1533 aa19.41■□□□□ 0.7
LIMCH1-214ENST00000512228 CUL7Q14999 1698 aa19.4■□□□□ 0.7
LIMCH1-214ENST00000512228 KIF13AQ9H1H9 1805 aa19.35■□□□□ 0.69
LIMCH1-214ENST00000512228 ADCY10Q96PN6 1610 aa19.32■□□□□ 0.68
LIMCH1-214ENST00000512228 TTBK1Q5TCY1 1321 aaPredicted RBP19.3■□□□□ 0.68
LIMCH1-214ENST00000512228 FAM69CQ0P6D2 419 aa19.25■□□□□ 0.67
LIMCH1-214ENST00000512228 NPM1P06748 294 aaKnown RBP eCLIP19.24■□□□□ 0.67
LIMCH1-214ENST00000512228 PTPRGP23470 1445 aa19.24■□□□□ 0.67
LIMCH1-214ENST00000512228 ABCC10Q5T3U5 1492 aa19.22■□□□□ 0.67
LIMCH1-214ENST00000512228 RAPGEF2Q9Y4G8 1499 aa19.22■□□□□ 0.67
LIMCH1-214ENST00000512228 IQGAP2Q13576 1575 aa19.21■□□□□ 0.67
LIMCH1-214ENST00000512228 DISP1Q96F81 1524 aa19.2■□□□□ 0.66
LIMCH1-214ENST00000512228 MAPKBP1O60336 1514 aa19.2■□□□□ 0.66
LIMCH1-214ENST00000512228 TNIKQ9UKE5 1360 aa19.19■□□□□ 0.66
LIMCH1-214ENST00000512228 DIP2BQ9P265 1576 aa19.16■□□□□ 0.66
LIMCH1-214ENST00000512228 CARMIL2Q6F5E8 1435 aa19.15■□□□□ 0.66
LIMCH1-214ENST00000512228 UGGT2Q9NYU1 1516 aa19.12■□□□□ 0.65
LIMCH1-214ENST00000512228 TSPOAP1O95153 1857 aa19.11■□□□□ 0.65
LIMCH1-214ENST00000512228 ABCC2Q92887 1545 aa19.09■□□□□ 0.65
LIMCH1-214ENST00000512228 PRXQ9BXM0 1461 aa19.09■□□□□ 0.65
LIMCH1-214ENST00000512228 UACAQ9BZF9 1416 aa19.08■□□□□ 0.65
LIMCH1-214ENST00000512228 UHRF1BP1LA0JNW5 1464 aa19.06■□□□□ 0.64
LIMCH1-214ENST00000512228 KIAA0556O60303 1618 aa19.06■□□□□ 0.64
LIMCH1-214ENST00000512228 ASXL2Q76L83 1435 aa19.06■□□□□ 0.64
LIMCH1-214ENST00000512228 CTTNBP2Q8WZ74 1663 aa19.04■□□□□ 0.64
LIMCH1-214ENST00000512228 AEBP2Q6ZN18 517 aaPredicted RBP19.02■□□□□ 0.64
LIMCH1-214ENST00000512228 KDM5BQ9UGL1 1544 aa19■□□□□ 0.63
LIMCH1-214ENST00000512228 PPRC1Q5VV67 1664 aaKnown RBP18.99■□□□□ 0.63
LIMCH1-214ENST00000512228 PLB1Q6P1J6 1458 aa18.99■□□□□ 0.63
LIMCH1-214ENST00000512228 CSRNP3Q8WYN3 585 aa18.99■□□□□ 0.63
LIMCH1-214ENST00000512228 ZCCHC11Q5TAX3 1644 aaKnown RBP18.97■□□□□ 0.63
LIMCH1-214ENST00000512228 P3H3Q8IVL6 736 aa18.97■□□□□ 0.63
LIMCH1-214ENST00000512228 GLI2P10070 1586 aa18.95■□□□□ 0.62
LIMCH1-214ENST00000512228 KDM6BO15054 1643 aa18.94■□□□□ 0.62
LIMCH1-214ENST00000512228 EPRSP07814 1512 aaKnown RBP18.93■□□□□ 0.62
LIMCH1-214ENST00000512228 COL17A1Q9UMD9 1497 aaPredicted RBP18.92■□□□□ 0.62
LIMCH1-214ENST00000512228 FAM9AQ8IZU1 332 aaPredicted RBP18.92■□□□□ 0.62
LIMCH1-214ENST00000512228 ABCA8O94911 1581 aa18.92■□□□□ 0.62
LIMCH1-214ENST00000512228 GOLGA3Q08378 1498 aa18.9■□□□□ 0.62
LIMCH1-214ENST00000512228 KDM4FA0A1W2PPD8 638 aa18.89■□□□□ 0.61
LIMCH1-214ENST00000512228 ARID3CA6NKF2 412 aa18.89■□□□□ 0.61
LIMCH1-214ENST00000512228 MAP3K4Q9Y6R4 1608 aa18.89■□□□□ 0.61
LIMCH1-214ENST00000512228 KCNH8Q96L42 1107 aa18.87■□□□□ 0.61
LIMCH1-214ENST00000512228 RANGAP1P46060 587 aaPredicted RBP18.85■□□□□ 0.61
LIMCH1-214ENST00000512228 WDR7Q9Y4E6 1490 aa18.84■□□□□ 0.61
LIMCH1-214ENST00000512228 ATP10BO94823 1461 aa18.81■□□□□ 0.6
LIMCH1-214ENST00000512228 CHIC1Q5VXU3 224 aa18.79■□□□□ 0.6
LIMCH1-214ENST00000512228 SAMD9Q5K651 1589 aa18.79■□□□□ 0.6
LIMCH1-214ENST00000512228 EHMT2Q96KQ7 1210 aa18.77■□□□□ 0.6
LIMCH1-214ENST00000512228 EEA1Q15075 1411 aa18.75■□□□□ 0.59
LIMCH1-214ENST00000512228 CD109Q6YHK3 1445 aa18.74■□□□□ 0.59
LIMCH1-214ENST00000512228 FHOD3Q2V2M9 1422 aa18.72■□□□□ 0.59
LIMCH1-214ENST00000512228 TEX14Q8IWB6 1497 aa18.71■□□□□ 0.59
LIMCH1-214ENST00000512228 MAGI3Q5TCQ9 1506 aa18.7■□□□□ 0.58
LIMCH1-214ENST00000512228 CFAP43Q8NDM7 1665 aa18.7■□□□□ 0.58
LIMCH1-214ENST00000512228 RAPGEF6Q8TEU7 1601 aa18.69■□□□□ 0.58
LIMCH1-214ENST00000512228 KIF21BO75037 1637 aa18.67■□□□□ 0.58
LIMCH1-214ENST00000512228 NUP153P49790 1475 aaKnown RBP18.67■□□□□ 0.58
LIMCH1-214ENST00000512228 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.65■□□□□ 0.58
LIMCH1-214ENST00000512228 HNRNPUL2Q1KMD3 747 aaKnown RBP18.65■□□□□ 0.58
LIMCH1-214ENST00000512228 ADGRL1O94910 1474 aa18.63■□□□□ 0.57
LIMCH1-214ENST00000512228 ABCA9Q8IUA7 1624 aa18.61■□□□□ 0.57
LIMCH1-214ENST00000512228 UBTFP17480 764 aaKnown RBP18.61■□□□□ 0.57
LIMCH1-214ENST00000512228 RAPGEF3O95398 923 aa18.58■□□□□ 0.56
LIMCH1-214ENST00000512228 ARAP3Q8WWN8 1544 aa18.57■□□□□ 0.56
LIMCH1-214ENST00000512228 PLEKHD1A6NEE1 506 aa18.55■□□□□ 0.56
LIMCH1-214ENST00000512228 EFCAB5A4FU69 1503 aa18.54■□□□□ 0.56
LIMCH1-214ENST00000512228 ARHGAP35Q9NRY4 1499 aa18.52■□□□□ 0.56
LIMCH1-214ENST00000512228 CDK13Q14004 1512 aaKnown RBP18.52■□□□□ 0.56
LIMCH1-214ENST00000512228 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.49■□□□□ 0.55
LIMCH1-214ENST00000512228 ATP1B4Q9UN42 357 aaPredicted RBP18.48■□□□□ 0.55
LIMCH1-214ENST00000512228 FRMPD1Q5SYB0 1578 aa18.47■□□□□ 0.55
LIMCH1-214ENST00000512228 NEO1Q92859 1461 aa18.46■□□□□ 0.55
LIMCH1-214ENST00000512228 PHLDB1Q86UU1 1377 aa18.46■□□□□ 0.55
LIMCH1-214ENST00000512228 TTC37Q6PGP7 1564 aa18.45■□□□□ 0.54
LIMCH1-214ENST00000512228 LRRIQ1Q96JM4 1722 aa18.43■□□□□ 0.54
LIMCH1-214ENST00000512228 AKNAQ7Z591 1439 aa18.42■□□□□ 0.54
LIMCH1-214ENST00000512228 FANCAO15360 1455 aa18.39■□□□□ 0.54
LIMCH1-214ENST00000512228 RICTORQ6R327 1708 aa18.39■□□□□ 0.53
LIMCH1-214ENST00000512228 FMN1Q68DA7 1419 aa18.39■□□□□ 0.53
LIMCH1-214ENST00000512228 PLCH2O75038 1416 aa18.36■□□□□ 0.53
LIMCH1-214ENST00000512228 DENND4BO75064 1496 aaPredicted RBP18.36■□□□□ 0.53
LIMCH1-214ENST00000512228 ADAMTSL3P82987 1691 aa18.35■□□□□ 0.53
LIMCH1-214ENST00000512228 KIF14Q15058 1648 aa18.35■□□□□ 0.53
LIMCH1-214ENST00000512228 SIGLEC1Q9BZZ2 1709 aa18.35■□□□□ 0.53
LIMCH1-214ENST00000512228 HECW1Q76N89 1606 aa18.34■□□□□ 0.53
LIMCH1-214ENST00000512228 HECW2Q9P2P5 1572 aa18.34■□□□□ 0.53
LIMCH1-214ENST00000512228 YEATS2Q9ULM3 1422 aa18.32■□□□□ 0.52
LIMCH1-214ENST00000512228 ARID4BQ4LE39 1312 aaPredicted RBP18.31■□□□□ 0.52
LIMCH1-214ENST00000512228 SCAPERQ9BY12 1400 aa18.31■□□□□ 0.52
LIMCH1-214ENST00000512228 BCORL1Q5H9F3 1711 aa18.3■□□□□ 0.52
LIMCH1-214ENST00000512228 PTPRMP28827 1452 aa18.29■□□□□ 0.52
LIMCH1-214ENST00000512228 TROQ12816 1431 aaPredicted RBP18.29■□□□□ 0.52
LIMCH1-214ENST00000512228 CDK11AQ9UQ88 783 aaPredicted RBP18.28■□□□□ 0.52
LIMCH1-214ENST00000512228 MYO5CQ9NQX4 1742 aa18.27■□□□□ 0.52
LIMCH1-214ENST00000512228 PCF11O94913 1555 aaKnown RBP18.27■□□□□ 0.52
LIMCH1-214ENST00000512228 CFAP74Q9C0B2 1584 aa18.27■□□□□ 0.52
LIMCH1-214ENST00000512228 EFCAB2Q5VUJ9 269 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms