RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 ADAMTS12P58397 1594 aa17.19■□□□□ 0.34
NUP54-211ENST00000512151 DIP2BQ9P265 1576 aa17.17■□□□□ 0.34
NUP54-211ENST00000512151 KDM6BO15054 1643 aa17.16■□□□□ 0.34
NUP54-211ENST00000512151 PRG4Q92954 1404 aaPredicted RBP17.15■□□□□ 0.34
NUP54-211ENST00000512151 MAPKBP1O60336 1514 aa17.12■□□□□ 0.33
NUP54-211ENST00000512151 FHAD1B1AJZ9 1412 aa17.09■□□□□ 0.33
NUP54-211ENST00000512151 TSPOAP1O95153 1857 aa17.08■□□□□ 0.33
NUP54-211ENST00000512151 MSH5O43196 834 aa17.06■□□□□ 0.32
NUP54-211ENST00000512151 JPH4Q96JJ6 628 aa17.06■□□□□ 0.32
NUP54-211ENST00000512151 ADCY10Q96PN6 1610 aa17.06■□□□□ 0.32
NUP54-211ENST00000512151 NPM1P06748 294 aaKnown RBP eCLIP17.04■□□□□ 0.32
NUP54-211ENST00000512151 ADGRL1O94910 1474 aa17.03■□□□□ 0.32
NUP54-211ENST00000512151 HECW2Q9P2P5 1572 aa17.02■□□□□ 0.32
NUP54-211ENST00000512151 WRNQ14191 1432 aaPredicted RBP eCLIP16.99■□□□□ 0.31
NUP54-211ENST00000512151 ERICH3Q5RHP9 1530 aa16.96■□□□□ 0.31
NUP54-211ENST00000512151 RUSC2Q8N2Y8 1516 aa16.96■□□□□ 0.31
NUP54-211ENST00000512151 PPRC1Q5VV67 1664 aaKnown RBP16.92■□□□□ 0.3
NUP54-211ENST00000512151 COL17A1Q9UMD9 1497 aaPredicted RBP16.9■□□□□ 0.3
NUP54-211ENST00000512151 TOP2BQ02880 1626 aa16.87■□□□□ 0.29
NUP54-211ENST00000512151 BIVM-ERCC5R4GMW8 1640 aa16.87■□□□□ 0.29
NUP54-211ENST00000512151 FBXO41Q8TF61 875 aa16.86■□□□□ 0.29
NUP54-211ENST00000512151 GLI2P10070 1586 aa16.81■□□□□ 0.28
NUP54-211ENST00000512151 ASXL2Q76L83 1435 aa16.8■□□□□ 0.28
NUP54-211ENST00000512151 KIAA0586Q9BVV6 1533 aa16.78■□□□□ 0.28
NUP54-211ENST00000512151 ABCC2Q92887 1545 aa16.77■□□□□ 0.27
NUP54-211ENST00000512151 PTPRGP23470 1445 aa16.77■□□□□ 0.27
NUP54-211ENST00000512151 TTBK1Q5TCY1 1321 aaPredicted RBP16.76■□□□□ 0.27
NUP54-211ENST00000512151 PLB1Q6P1J6 1458 aa16.75■□□□□ 0.27
NUP54-211ENST00000512151 MAP3K4Q9Y6R4 1608 aa16.71■□□□□ 0.27
NUP54-211ENST00000512151 CUL7Q14999 1698 aa16.71■□□□□ 0.27
NUP54-211ENST00000512151 EPRSP07814 1512 aaKnown RBP16.7■□□□□ 0.26
NUP54-211ENST00000512151 TNIKQ9UKE5 1360 aa16.66■□□□□ 0.26
NUP54-211ENST00000512151 UHRF1BP1LA0JNW5 1464 aa16.66■□□□□ 0.26
NUP54-211ENST00000512151 TEX14Q8IWB6 1497 aa16.65■□□□□ 0.26
NUP54-211ENST00000512151 IGF1RP08069 1367 aa16.65■□□□□ 0.26
NUP54-211ENST00000512151 UACAQ9BZF9 1416 aa16.62■□□□□ 0.25
NUP54-211ENST00000512151 LMTK3Q96Q04 1460 aa16.62■□□□□ 0.25
NUP54-211ENST00000512151 KDM5BQ9UGL1 1544 aa16.6■□□□□ 0.25
NUP54-211ENST00000512151 CARMIL2Q6F5E8 1435 aa16.59■□□□□ 0.25
NUP54-211ENST00000512151 KIF21BO75037 1637 aa16.57■□□□□ 0.24
NUP54-211ENST00000512151 ZCCHC11Q5TAX3 1644 aaKnown RBP16.57■□□□□ 0.24
NUP54-211ENST00000512151 DISP1Q96F81 1524 aa16.54■□□□□ 0.24
NUP54-211ENST00000512151 ILDR2Q71H61 639 aa16.53■□□□□ 0.24
NUP54-211ENST00000512151 IQGAP2Q13576 1575 aa16.51■□□□□ 0.23
NUP54-211ENST00000512151 PTPRMP28827 1452 aa16.51■□□□□ 0.23
NUP54-211ENST00000512151 SUPT5HO00267 1087 aaKnown RBP16.51■□□□□ 0.23
NUP54-211ENST00000512151 WDR7Q9Y4E6 1490 aa16.5■□□□□ 0.23
NUP54-211ENST00000512151 KIF27Q86VH2 1401 aa16.49■□□□□ 0.23
NUP54-211ENST00000512151 CARMIL1Q5VZK9 1371 aa16.49■□□□□ 0.23
NUP54-211ENST00000512151 MAGI3Q5TCQ9 1506 aa16.49■□□□□ 0.23
NUP54-211ENST00000512151 ADAMTSL3P82987 1691 aa16.48■□□□□ 0.23
NUP54-211ENST00000512151 CD109Q6YHK3 1445 aa16.48■□□□□ 0.23
NUP54-211ENST00000512151 SOCS7O14512 581 aa16.47■□□□□ 0.23
NUP54-211ENST00000512151 PCF11O94913 1555 aaKnown RBP16.45■□□□□ 0.22
NUP54-211ENST00000512151 CFAP43Q8NDM7 1665 aa16.44■□□□□ 0.22
NUP54-211ENST00000512151 KCNH8Q96L42 1107 aa16.41■□□□□ 0.22
NUP54-211ENST00000512151 DISP3Q9P2K9 1392 aa16.41■□□□□ 0.22
NUP54-211ENST00000512151 UGGT2Q9NYU1 1516 aa16.4■□□□□ 0.22
NUP54-211ENST00000512151 KIAA0556O60303 1618 aa16.4■□□□□ 0.22
NUP54-211ENST00000512151 ARAP3Q8WWN8 1544 aa16.39■□□□□ 0.21
NUP54-211ENST00000512151 CERKQ8TCT0 537 aa16.38■□□□□ 0.21
NUP54-211ENST00000512151 MADDQ8WXG6 1647 aa16.37■□□□□ 0.21
NUP54-211ENST00000512151 HSPA2P54652 639 aa16.37■□□□□ 0.21
NUP54-211ENST00000512151 BCORL1Q5H9F3 1711 aa16.35■□□□□ 0.21
NUP54-211ENST00000512151 ABCA8O94911 1581 aa16.31■□□□□ 0.2
NUP54-211ENST00000512151 RAPGEF3O95398 923 aa16.31■□□□□ 0.2
NUP54-211ENST00000512151 RIMS1Q86UR5 1692 aaKnown RBP16.28■□□□□ 0.2
NUP54-211ENST00000512151 FRMPD1Q5SYB0 1578 aa16.27■□□□□ 0.19
NUP54-211ENST00000512151 ARID4BQ4LE39 1312 aaPredicted RBP16.27■□□□□ 0.19
NUP54-211ENST00000512151 RAPGEF2Q9Y4G8 1499 aa16.24■□□□□ 0.19
NUP54-211ENST00000512151 PLPPR3Q6T4P5 718 aa16.24■□□□□ 0.19
NUP54-211ENST00000512151 SPATA31D1Q6ZQQ2 1576 aa16.23■□□□□ 0.19
NUP54-211ENST00000512151 ARID3CA6NKF2 412 aa16.22■□□□□ 0.19
NUP54-211ENST00000512151 PIAS4Q8N2W9 510 aaPredicted RBP16.21■□□□□ 0.19
NUP54-211ENST00000512151 PHLDB1Q86UU1 1377 aa16.21■□□□□ 0.19
NUP54-211ENST00000512151 ABCA9Q8IUA7 1624 aa16.2■□□□□ 0.18
NUP54-211ENST00000512151 ATP10BO94823 1461 aa16.18■□□□□ 0.18
NUP54-211ENST00000512151 NEO1Q92859 1461 aa16.18■□□□□ 0.18
NUP54-211ENST00000512151 ARHGEF40Q8TER5 1519 aa16.17■□□□□ 0.18
NUP54-211ENST00000512151 SIGLEC1Q9BZZ2 1709 aa16.17■□□□□ 0.18
NUP54-211ENST00000512151 GOLGA3Q08378 1498 aa16.14■□□□□ 0.17
NUP54-211ENST00000512151 CTTNBP2Q8WZ74 1663 aa16.13■□□□□ 0.17
NUP54-211ENST00000512151 RICTORQ6R327 1708 aa16.1■□□□□ 0.17
NUP54-211ENST00000512151 STRCQ7RTU9 1775 aa16.09■□□□□ 0.17
NUP54-211ENST00000512151 DENND4BO75064 1496 aaPredicted RBP16.07■□□□□ 0.16
NUP54-211ENST00000512151 YEATS2Q9ULM3 1422 aa16.07■□□□□ 0.16
NUP54-211ENST00000512151 MLECQ14165 292 aa16.07■□□□□ 0.16
NUP54-211ENST00000512151 TTC37Q6PGP7 1564 aa16.06■□□□□ 0.16
NUP54-211ENST00000512151 FANCAO15360 1455 aa16.06■□□□□ 0.16
NUP54-211ENST00000512151 FHOD3Q2V2M9 1422 aa16.06■□□□□ 0.16
NUP54-211ENST00000512151 POGZQ7Z3K3 1410 aa16.05■□□□□ 0.16
NUP54-211ENST00000512151 FER1L4A9Z1Z3 1794 aa16.05■□□□□ 0.16
NUP54-211ENST00000512151 P3H3Q8IVL6 736 aa16.05■□□□□ 0.16
NUP54-211ENST00000512151 AKNAQ7Z591 1439 aa16.05■□□□□ 0.16
NUP54-211ENST00000512151 PREX1Q8TCU6 1659 aa16.03■□□□□ 0.16
NUP54-211ENST00000512151 ZMYM4Q5VZL5 1548 aa16.02■□□□□ 0.16
NUP54-211ENST00000512151 CEBPAP49715 358 aaPredicted RBP16.02■□□□□ 0.16
NUP54-211ENST00000512151 ZFYVE16Q7Z3T8 1539 aa16.02■□□□□ 0.15
NUP54-211ENST00000512151 ARHGEF12Q9NZN5 1544 aa15.99■□□□□ 0.15
NUP54-211ENST00000512151 LTBP4Q8N2S1 1624 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms