RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 NPM1P06748 294 aaKnown RBP eCLIP22.44■■□□□ 1.18
TCOF1-209ENST00000506630 FAM69CQ0P6D2 419 aa22.39■■□□□ 1.17
TCOF1-209ENST00000506630 KIF27Q86VH2 1401 aa22.39■■□□□ 1.17
TCOF1-209ENST00000506630 KIF13AQ9H1H9 1805 aa22.36■■□□□ 1.17
TCOF1-209ENST00000506630 IGF1RP08069 1367 aa22.36■■□□□ 1.17
TCOF1-209ENST00000506630 ABCC10Q5T3U5 1492 aa22.34■■□□□ 1.17
TCOF1-209ENST00000506630 CUL7Q14999 1698 aa22.33■■□□□ 1.17
TCOF1-209ENST00000506630 RUSC2Q8N2Y8 1516 aa22.29■■□□□ 1.16
TCOF1-209ENST00000506630 MAPKBP1O60336 1514 aa22.27■■□□□ 1.16
TCOF1-209ENST00000506630 KIAA0586Q9BVV6 1533 aa22.21■■□□□ 1.15
TCOF1-209ENST00000506630 DIP2BQ9P265 1576 aa22.21■■□□□ 1.15
TCOF1-209ENST00000506630 ADCY10Q96PN6 1610 aa22.2■■□□□ 1.14
TCOF1-209ENST00000506630 CARMIL1Q5VZK9 1371 aa22.17■■□□□ 1.14
TCOF1-209ENST00000506630 KDM6BO15054 1643 aa22.14■■□□□ 1.14
TCOF1-209ENST00000506630 KDM4FA0A1W2PPD8 638 aa22.12■■□□□ 1.13
TCOF1-209ENST00000506630 PTPRGP23470 1445 aa22.12■■□□□ 1.13
TCOF1-209ENST00000506630 TTBK1Q5TCY1 1321 aaPredicted RBP22.08■■□□□ 1.13
TCOF1-209ENST00000506630 CARMIL2Q6F5E8 1435 aa22.06■■□□□ 1.12
TCOF1-209ENST00000506630 RAPGEF2Q9Y4G8 1499 aa22.04■■□□□ 1.12
TCOF1-209ENST00000506630 TSPOAP1O95153 1857 aa22.04■■□□□ 1.12
TCOF1-209ENST00000506630 TNIKQ9UKE5 1360 aa22.03■■□□□ 1.12
TCOF1-209ENST00000506630 ABCC2Q92887 1545 aa22■■□□□ 1.11
TCOF1-209ENST00000506630 CTTNBP2Q8WZ74 1663 aa21.99■■□□□ 1.11
TCOF1-209ENST00000506630 PLB1Q6P1J6 1458 aa21.98■■□□□ 1.11
TCOF1-209ENST00000506630 ASXL2Q76L83 1435 aa21.97■■□□□ 1.11
TCOF1-209ENST00000506630 IQGAP2Q13576 1575 aa21.96■■□□□ 1.11
TCOF1-209ENST00000506630 EEA1Q15075 1411 aa21.95■■□□□ 1.1
TCOF1-209ENST00000506630 PRXQ9BXM0 1461 aa21.94■■□□□ 1.1
TCOF1-209ENST00000506630 DISP1Q96F81 1524 aa21.92■■□□□ 1.1
TCOF1-209ENST00000506630 GLI2P10070 1586 aa21.91■■□□□ 1.1
TCOF1-209ENST00000506630 UHRF1BP1LA0JNW5 1464 aa21.91■■□□□ 1.1
TCOF1-209ENST00000506630 UACAQ9BZF9 1416 aa21.91■■□□□ 1.1
TCOF1-209ENST00000506630 CSRNP3Q8WYN3 585 aa21.88■■□□□ 1.09
TCOF1-209ENST00000506630 FAM9AQ8IZU1 332 aaPredicted RBP21.87■■□□□ 1.09
TCOF1-209ENST00000506630 UGGT2Q9NYU1 1516 aa21.85■■□□□ 1.09
TCOF1-209ENST00000506630 ILDR1Q86SU0 546 aaPredicted RBP21.84■■□□□ 1.09
TCOF1-209ENST00000506630 ADGRL1O94910 1474 aa21.83■■□□□ 1.09
TCOF1-209ENST00000506630 PPRC1Q5VV67 1664 aaKnown RBP21.82■■□□□ 1.08
TCOF1-209ENST00000506630 EPRSP07814 1512 aaKnown RBP21.82■■□□□ 1.08
TCOF1-209ENST00000506630 KDM5BQ9UGL1 1544 aa21.81■■□□□ 1.08
TCOF1-209ENST00000506630 TEX14Q8IWB6 1497 aa21.81■■□□□ 1.08
TCOF1-209ENST00000506630 KIF21BO75037 1637 aa21.8■■□□□ 1.08
TCOF1-209ENST00000506630 COL17A1Q9UMD9 1497 aaPredicted RBP21.79■■□□□ 1.08
TCOF1-209ENST00000506630 KIAA0556O60303 1618 aa21.79■■□□□ 1.08
TCOF1-209ENST00000506630 MAP3K4Q9Y6R4 1608 aa21.75■■□□□ 1.07
TCOF1-209ENST00000506630 ZCCHC11Q5TAX3 1644 aaKnown RBP21.71■■□□□ 1.07
TCOF1-209ENST00000506630 WDR7Q9Y4E6 1490 aa21.7■■□□□ 1.06
TCOF1-209ENST00000506630 GOLGA3Q08378 1498 aa21.68■■□□□ 1.06
TCOF1-209ENST00000506630 P3H3Q8IVL6 736 aa21.64■■□□□ 1.05
TCOF1-209ENST00000506630 KCNH8Q96L42 1107 aa21.64■■□□□ 1.05
TCOF1-209ENST00000506630 HECW2Q9P2P5 1572 aa21.63■■□□□ 1.05
TCOF1-209ENST00000506630 CD109Q6YHK3 1445 aa21.63■■□□□ 1.05
TCOF1-209ENST00000506630 EHMT2Q96KQ7 1210 aa21.62■■□□□ 1.05
TCOF1-209ENST00000506630 SAMD9Q5K651 1589 aa21.61■■□□□ 1.05
TCOF1-209ENST00000506630 ABCA8O94911 1581 aa21.6■■□□□ 1.05
TCOF1-209ENST00000506630 MAGI3Q5TCQ9 1506 aa21.6■■□□□ 1.05
TCOF1-209ENST00000506630 CFAP43Q8NDM7 1665 aa21.54■■□□□ 1.04
TCOF1-209ENST00000506630 UBTFP17480 764 aaKnown RBP21.54■■□□□ 1.04
TCOF1-209ENST00000506630 RANGAP1P46060 587 aaPredicted RBP21.54■■□□□ 1.04
TCOF1-209ENST00000506630 ARID3CA6NKF2 412 aa21.53■■□□□ 1.04
TCOF1-209ENST00000506630 EFCAB5A4FU69 1503 aa21.5■■□□□ 1.03
TCOF1-209ENST00000506630 FHOD3Q2V2M9 1422 aa21.45■■□□□ 1.02
TCOF1-209ENST00000506630 ATP10BO94823 1461 aa21.45■■□□□ 1.02
TCOF1-209ENST00000506630 ARAP3Q8WWN8 1544 aa21.44■■□□□ 1.02
TCOF1-209ENST00000506630 RAPGEF6Q8TEU7 1601 aa21.43■■□□□ 1.02
TCOF1-209ENST00000506630 PHLDB1Q86UU1 1377 aa21.42■■□□□ 1.02
TCOF1-209ENST00000506630 FBXO41Q8TF61 875 aa21.36■■□□□ 1.01
TCOF1-209ENST00000506630 ARHGAP35Q9NRY4 1499 aa21.36■■□□□ 1.01
TCOF1-209ENST00000506630 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.35■■□□□ 1.01
TCOF1-209ENST00000506630 HNRNPUL2Q1KMD3 747 aaKnown RBP21.35■■□□□ 1.01
TCOF1-209ENST00000506630 RAPGEF3O95398 923 aa21.34■■□□□ 1.01
TCOF1-209ENST00000506630 NUP153P49790 1475 aaKnown RBP21.33■■□□□ 1.01
TCOF1-209ENST00000506630 PTPRMP28827 1452 aa21.32■■□□□ 1
TCOF1-209ENST00000506630 ARID4BQ4LE39 1312 aaPredicted RBP21.31■■□□□ 1
TCOF1-209ENST00000506630 ABCA9Q8IUA7 1624 aa21.31■■□□□ 1
TCOF1-209ENST00000506630 NEO1Q92859 1461 aa21.31■■□□□ 1
TCOF1-209ENST00000506630 ADAMTSL3P82987 1691 aa21.26■□□□□ 0.99
TCOF1-209ENST00000506630 FMN1Q68DA7 1419 aa21.25■□□□□ 0.99
TCOF1-209ENST00000506630 HECW1Q76N89 1606 aa21.25■□□□□ 0.99
TCOF1-209ENST00000506630 CLIP1P30622 1438 aa21.21■□□□□ 0.99
TCOF1-209ENST00000506630 PLEKHD1A6NEE1 506 aa21.2■□□□□ 0.98
TCOF1-209ENST00000506630 LRRIQ1Q96JM4 1722 aa21.19■□□□□ 0.98
TCOF1-209ENST00000506630 CDK13Q14004 1512 aaKnown RBP21.19■□□□□ 0.98
TCOF1-209ENST00000506630 BCORL1Q5H9F3 1711 aa21.18■□□□□ 0.98
TCOF1-209ENST00000506630 PCF11O94913 1555 aaKnown RBP21.18■□□□□ 0.98
TCOF1-209ENST00000506630 MADDQ8WXG6 1647 aa21.16■□□□□ 0.98
TCOF1-209ENST00000506630 FRMPD1Q5SYB0 1578 aa21.16■□□□□ 0.98
TCOF1-209ENST00000506630 DENND4BO75064 1496 aaPredicted RBP21.16■□□□□ 0.98
TCOF1-209ENST00000506630 ATP1B4Q9UN42 357 aaPredicted RBP21.15■□□□□ 0.98
TCOF1-209ENST00000506630 LMTK3Q96Q04 1460 aa21.13■□□□□ 0.97
TCOF1-209ENST00000506630 CEP162Q5TB80 1403 aa21.13■□□□□ 0.97
TCOF1-209ENST00000506630 AKNAQ7Z591 1439 aa21.12■□□□□ 0.97
TCOF1-209ENST00000506630 LOC105371045A0A1W2PR82 267 aa21.12■□□□□ 0.97
TCOF1-209ENST00000506630 POGZQ7Z3K3 1410 aa21.12■□□□□ 0.97
TCOF1-209ENST00000506630 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.11■□□□□ 0.97
TCOF1-209ENST00000506630 ARHGEF40Q8TER5 1519 aa21.11■□□□□ 0.97
TCOF1-209ENST00000506630 FANCAO15360 1455 aa21.1■□□□□ 0.97
TCOF1-209ENST00000506630 PLPPR3Q6T4P5 718 aa21.1■□□□□ 0.97
TCOF1-209ENST00000506630 TTC37Q6PGP7 1564 aa21.1■□□□□ 0.97
TCOF1-209ENST00000506630 CASKIN1Q8WXD9 1431 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms