RNA–Protein interactions for RNA: ENST00000506409.1

MED28-204, Transcript of mediator complex subunit 28, humanhuman

TSL 2

Gene MED28, Length 347 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-204ENST00000506409 JPH4Q96JJ6 628 aa26.39■■□□□ 1.82
MED28-204ENST00000506409 PRG4Q92954 1404 aaPredicted RBP26.37■■□□□ 1.81
MED28-204ENST00000506409 KIAA0586Q9BVV6 1533 aa26.36■■□□□ 1.81
MED28-204ENST00000506409 RAPGEF2Q9Y4G8 1499 aa26.29■■□□□ 1.8
MED28-204ENST00000506409 IQGAP2Q13576 1575 aa26.2■■□□□ 1.78
MED28-204ENST00000506409 TRHP20396 242 aaPredicted RBP26.18■■□□□ 1.78
MED28-204ENST00000506409 PRXQ9BXM0 1461 aa26.14■■□□□ 1.78
MED28-204ENST00000506409 CARMIL2Q6F5E8 1435 aa26.1■■□□□ 1.77
MED28-204ENST00000506409 EEA1Q15075 1411 aa26.07■■□□□ 1.76
MED28-204ENST00000506409 CSRNP3Q8WYN3 585 aa26.07■■□□□ 1.76
MED28-204ENST00000506409 CHIC1Q5VXU3 224 aa26.05■■□□□ 1.76
MED28-204ENST00000506409 UGGT2Q9NYU1 1516 aa26.04■■□□□ 1.76
MED28-204ENST00000506409 CTTNBP2Q8WZ74 1663 aa26.03■■□□□ 1.76
MED28-204ENST00000506409 PTPRGP23470 1445 aa26.03■■□□□ 1.76
MED28-204ENST00000506409 TNIKQ9UKE5 1360 aa26.02■■□□□ 1.76
MED28-204ENST00000506409 DISP1Q96F81 1524 aa26.02■■□□□ 1.76
MED28-204ENST00000506409 TTBK1Q5TCY1 1321 aaPredicted RBP26■■□□□ 1.75
MED28-204ENST00000506409 ADCY10Q96PN6 1610 aa25.99■■□□□ 1.75
MED28-204ENST00000506409 FAM9AQ8IZU1 332 aaPredicted RBP25.97■■□□□ 1.75
MED28-204ENST00000506409 NPM1P06748 294 aaKnown RBP eCLIP25.95■■□□□ 1.74
MED28-204ENST00000506409 KIAA0556O60303 1618 aa25.94■■□□□ 1.74
MED28-204ENST00000506409 GOLGA3Q08378 1498 aa25.89■■□□□ 1.73
MED28-204ENST00000506409 MAPKBP1O60336 1514 aa25.86■■□□□ 1.73
MED28-204ENST00000506409 UACAQ9BZF9 1416 aa25.84■■□□□ 1.73
MED28-204ENST00000506409 UHRF1BP1LA0JNW5 1464 aa25.82■■□□□ 1.72
MED28-204ENST00000506409 ABCC2Q92887 1545 aa25.82■■□□□ 1.72
MED28-204ENST00000506409 KIF21BO75037 1637 aa25.81■■□□□ 1.72
MED28-204ENST00000506409 KIF13AQ9H1H9 1805 aa25.77■■□□□ 1.72
MED28-204ENST00000506409 ABCC10Q5T3U5 1492 aa25.77■■□□□ 1.72
MED28-204ENST00000506409 FAM69CQ0P6D2 419 aa25.73■■□□□ 1.71
MED28-204ENST00000506409 DIP2BQ9P265 1576 aa25.72■■□□□ 1.71
MED28-204ENST00000506409 PLB1Q6P1J6 1458 aa25.72■■□□□ 1.71
MED28-204ENST00000506409 KDM5BQ9UGL1 1544 aa25.7■■□□□ 1.7
MED28-204ENST00000506409 P3H3Q8IVL6 736 aa25.7■■□□□ 1.7
MED28-204ENST00000506409 SAMD9Q5K651 1589 aa25.69■■□□□ 1.7
MED28-204ENST00000506409 ASXL2Q76L83 1435 aa25.68■■□□□ 1.7
MED28-204ENST00000506409 RANGAP1P46060 587 aaPredicted RBP25.67■■□□□ 1.7
MED28-204ENST00000506409 ABCA8O94911 1581 aa25.66■■□□□ 1.7
MED28-204ENST00000506409 EHMT2Q96KQ7 1210 aa25.66■■□□□ 1.7
MED28-204ENST00000506409 ZCCHC11Q5TAX3 1644 aaKnown RBP25.65■■□□□ 1.7
MED28-204ENST00000506409 UBTFP17480 764 aaKnown RBP25.63■■□□□ 1.69
MED28-204ENST00000506409 EFCAB5A4FU69 1503 aa25.56■■□□□ 1.68
MED28-204ENST00000506409 FHOD3Q2V2M9 1422 aa25.55■■□□□ 1.68
MED28-204ENST00000506409 GLI2P10070 1586 aa25.52■■□□□ 1.68
MED28-204ENST00000506409 WDR7Q9Y4E6 1490 aa25.52■■□□□ 1.68
MED28-204ENST00000506409 EPRSP07814 1512 aaKnown RBP25.52■■□□□ 1.68
MED28-204ENST00000506409 TSPOAP1O95153 1857 aa25.51■■□□□ 1.67
MED28-204ENST00000506409 RAPGEF6Q8TEU7 1601 aa25.49■■□□□ 1.67
MED28-204ENST00000506409 ARID3CA6NKF2 412 aa25.49■■□□□ 1.67
MED28-204ENST00000506409 ATP10BO94823 1461 aa25.46■■□□□ 1.67
MED28-204ENST00000506409 MAP3K4Q9Y6R4 1608 aa25.41■■□□□ 1.66
MED28-204ENST00000506409 NUP153P49790 1475 aaKnown RBP25.41■■□□□ 1.66
MED28-204ENST00000506409 KCNH8Q96L42 1107 aa25.4■■□□□ 1.66
MED28-204ENST00000506409 ARHGAP35Q9NRY4 1499 aa25.4■■□□□ 1.66
MED28-204ENST00000506409 PPRC1Q5VV67 1664 aaKnown RBP25.39■■□□□ 1.65
MED28-204ENST00000506409 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.37■■□□□ 1.65
MED28-204ENST00000506409 HNRNPUL2Q1KMD3 747 aaKnown RBP25.37■■□□□ 1.65
MED28-204ENST00000506409 KDM6BO15054 1643 aa25.37■■□□□ 1.65
MED28-204ENST00000506409 FMN1Q68DA7 1419 aa25.33■■□□□ 1.65
MED28-204ENST00000506409 TEX14Q8IWB6 1497 aa25.33■■□□□ 1.65
MED28-204ENST00000506409 CFAP43Q8NDM7 1665 aa25.31■■□□□ 1.64
MED28-204ENST00000506409 CD109Q6YHK3 1445 aa25.3■■□□□ 1.64
MED28-204ENST00000506409 MAGI3Q5TCQ9 1506 aa25.25■■□□□ 1.63
MED28-204ENST00000506409 PLEKHD1A6NEE1 506 aa25.23■■□□□ 1.63
MED28-204ENST00000506409 ATP1B4Q9UN42 357 aaPredicted RBP25.23■■□□□ 1.63
MED28-204ENST00000506409 HECW1Q76N89 1606 aa25.23■■□□□ 1.63
MED28-204ENST00000506409 CDK13Q14004 1512 aaKnown RBP25.22■■□□□ 1.63
MED28-204ENST00000506409 ABCA9Q8IUA7 1624 aa25.21■■□□□ 1.63
MED28-204ENST00000506409 CLIP1P30622 1438 aa25.2■■□□□ 1.62
MED28-204ENST00000506409 COL17A1Q9UMD9 1497 aaPredicted RBP25.18■■□□□ 1.62
MED28-204ENST00000506409 CASKIN1Q8WXD9 1431 aa25.11■■□□□ 1.61
MED28-204ENST00000506409 PCF11O94913 1555 aaKnown RBP25.1■■□□□ 1.61
MED28-204ENST00000506409 CDK11AQ9UQ88 783 aaPredicted RBP25.1■■□□□ 1.61
MED28-204ENST00000506409 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.07■■□□□ 1.6
MED28-204ENST00000506409 PHLDB1Q86UU1 1377 aa25.05■■□□□ 1.6
MED28-204ENST00000506409 LRRIQ1Q96JM4 1722 aa25.05■■□□□ 1.6
MED28-204ENST00000506409 TTC37Q6PGP7 1564 aa25.05■■□□□ 1.6
MED28-204ENST00000506409 NEO1Q92859 1461 aa25.04■■□□□ 1.6
MED28-204ENST00000506409 FYCO1Q9BQS8 1478 aa25.04■■□□□ 1.6
MED28-204ENST00000506409 ARAP3Q8WWN8 1544 aa25.04■■□□□ 1.6
MED28-204ENST00000506409 CEP162Q5TB80 1403 aa25.03■■□□□ 1.6
MED28-204ENST00000506409 CCDC18Q5T9S5 1454 aa25.03■■□□□ 1.6
MED28-204ENST00000506409 TROQ12816 1431 aaPredicted RBP25.01■■□□□ 1.59
MED28-204ENST00000506409 AEBP2Q6ZN18 517 aaPredicted RBP25■■□□□ 1.59
MED28-204ENST00000506409 LOC105371045A0A1W2PR82 267 aa24.99■■□□□ 1.59
MED28-204ENST00000506409 KIF14Q15058 1648 aa24.97■■□□□ 1.59
MED28-204ENST00000506409 FANCAO15360 1455 aa24.96■■□□□ 1.59
MED28-204ENST00000506409 CFAP74Q9C0B2 1584 aa24.95■■□□□ 1.58
MED28-204ENST00000506409 PLCH2O75038 1416 aa24.93■■□□□ 1.58
MED28-204ENST00000506409 RAPGEF3O95398 923 aa24.92■■□□□ 1.58
MED28-204ENST00000506409 AKNAQ7Z591 1439 aa24.92■■□□□ 1.58
MED28-204ENST00000506409 MYO5CQ9NQX4 1742 aa24.89■■□□□ 1.58
MED28-204ENST00000506409 DENND4BO75064 1496 aaPredicted RBP24.87■■□□□ 1.57
MED28-204ENST00000506409 FRMPD1Q5SYB0 1578 aa24.86■■□□□ 1.57
MED28-204ENST00000506409 KDM4FA0A1W2PPD8 638 aa24.86■■□□□ 1.57
MED28-204ENST00000506409 EFCAB2Q5VUJ9 269 aa24.84■■□□□ 1.57
MED28-204ENST00000506409 ADGRL1O94910 1474 aa24.83■■□□□ 1.56
MED28-204ENST00000506409 ARHGAP5Q13017 1502 aa24.81■■□□□ 1.56
MED28-204ENST00000506409 RICTORQ6R327 1708 aa24.81■■□□□ 1.56
MED28-204ENST00000506409 SCAPERQ9BY12 1400 aa24.79■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms