RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 CARMIL1Q5VZK9 1371 aa21.87■■□□□ 1.09
PTPRF-214ENST00000496043 KIAA0586Q9BVV6 1533 aa21.82■■□□□ 1.08
PTPRF-214ENST00000496043 CUL7Q14999 1698 aa21.81■■□□□ 1.08
PTPRF-214ENST00000496043 RUSC2Q8N2Y8 1516 aa21.76■■□□□ 1.07
PTPRF-214ENST00000496043 NPM1P06748 294 aaKnown RBP eCLIP21.74■■□□□ 1.07
PTPRF-214ENST00000496043 RAPGEF2Q9Y4G8 1499 aa21.64■■□□□ 1.06
PTPRF-214ENST00000496043 PTPRGP23470 1445 aa21.63■■□□□ 1.05
PTPRF-214ENST00000496043 CARMIL2Q6F5E8 1435 aa21.63■■□□□ 1.05
PTPRF-214ENST00000496043 TTBK1Q5TCY1 1321 aaPredicted RBP21.62■■□□□ 1.05
PTPRF-214ENST00000496043 TNIKQ9UKE5 1360 aa21.59■■□□□ 1.05
PTPRF-214ENST00000496043 FAM69CQ0P6D2 419 aa21.57■■□□□ 1.04
PTPRF-214ENST00000496043 IQGAP2Q13576 1575 aa21.56■■□□□ 1.04
PTPRF-214ENST00000496043 ADCY10Q96PN6 1610 aa21.51■■□□□ 1.03
PTPRF-214ENST00000496043 ABCC10Q5T3U5 1492 aa21.49■■□□□ 1.03
PTPRF-214ENST00000496043 MAPKBP1O60336 1514 aa21.48■■□□□ 1.03
PTPRF-214ENST00000496043 DISP1Q96F81 1524 aa21.47■■□□□ 1.03
PTPRF-214ENST00000496043 CSRNP3Q8WYN3 585 aa21.46■■□□□ 1.03
PTPRF-214ENST00000496043 UGGT2Q9NYU1 1516 aa21.45■■□□□ 1.02
PTPRF-214ENST00000496043 PRXQ9BXM0 1461 aa21.45■■□□□ 1.02
PTPRF-214ENST00000496043 UACAQ9BZF9 1416 aa21.44■■□□□ 1.02
PTPRF-214ENST00000496043 KIF13AQ9H1H9 1805 aa21.41■■□□□ 1.02
PTPRF-214ENST00000496043 ABCC2Q92887 1545 aa21.41■■□□□ 1.02
PTPRF-214ENST00000496043 UHRF1BP1LA0JNW5 1464 aa21.4■■□□□ 1.02
PTPRF-214ENST00000496043 FAM9AQ8IZU1 332 aaPredicted RBP21.36■■□□□ 1.01
PTPRF-214ENST00000496043 GOLGA3Q08378 1498 aa21.36■■□□□ 1.01
PTPRF-214ENST00000496043 DIP2BQ9P265 1576 aa21.36■■□□□ 1.01
PTPRF-214ENST00000496043 PLB1Q6P1J6 1458 aa21.34■■□□□ 1.01
PTPRF-214ENST00000496043 KIAA0556O60303 1618 aa21.34■■□□□ 1.01
PTPRF-214ENST00000496043 ASXL2Q76L83 1435 aa21.34■■□□□ 1.01
PTPRF-214ENST00000496043 EEA1Q15075 1411 aa21.31■■□□□ 1
PTPRF-214ENST00000496043 AEBP2Q6ZN18 517 aaPredicted RBP21.31■■□□□ 1
PTPRF-214ENST00000496043 CTTNBP2Q8WZ74 1663 aa21.31■■□□□ 1
PTPRF-214ENST00000496043 KDM5BQ9UGL1 1544 aa21.29■■□□□ 1
PTPRF-214ENST00000496043 P3H3Q8IVL6 736 aa21.28■■□□□ 1
PTPRF-214ENST00000496043 CHIC1Q5VXU3 224 aa21.22■□□□□ 0.99
PTPRF-214ENST00000496043 GLI2P10070 1586 aa21.21■□□□□ 0.99
PTPRF-214ENST00000496043 TSPOAP1O95153 1857 aa21.2■□□□□ 0.98
PTPRF-214ENST00000496043 EPRSP07814 1512 aaKnown RBP21.19■□□□□ 0.98
PTPRF-214ENST00000496043 ZCCHC11Q5TAX3 1644 aaKnown RBP21.18■□□□□ 0.98
PTPRF-214ENST00000496043 RANGAP1P46060 587 aaPredicted RBP21.17■□□□□ 0.98
PTPRF-214ENST00000496043 KCNH8Q96L42 1107 aa21.17■□□□□ 0.98
PTPRF-214ENST00000496043 ABCA8O94911 1581 aa21.16■□□□□ 0.98
PTPRF-214ENST00000496043 KDM6BO15054 1643 aa21.14■□□□□ 0.97
PTPRF-214ENST00000496043 WDR7Q9Y4E6 1490 aa21.13■□□□□ 0.97
PTPRF-214ENST00000496043 ARID3CA6NKF2 412 aa21.11■□□□□ 0.97
PTPRF-214ENST00000496043 TEX14Q8IWB6 1497 aa21.07■□□□□ 0.96
PTPRF-214ENST00000496043 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.07■□□□□ 0.96
PTPRF-214ENST00000496043 UBTFP17480 764 aaKnown RBP21.07■□□□□ 0.96
PTPRF-214ENST00000496043 HNRNPUL2Q1KMD3 747 aaKnown RBP21.07■□□□□ 0.96
PTPRF-214ENST00000496043 ATP10BO94823 1461 aa21.07■□□□□ 0.96
PTPRF-214ENST00000496043 SAMD9Q5K651 1589 aa21.06■□□□□ 0.96
PTPRF-214ENST00000496043 CD109Q6YHK3 1445 aa21.05■□□□□ 0.96
PTPRF-214ENST00000496043 EHMT2Q96KQ7 1210 aa21.05■□□□□ 0.96
PTPRF-214ENST00000496043 MAP3K4Q9Y6R4 1608 aa21.04■□□□□ 0.96
PTPRF-214ENST00000496043 PPRC1Q5VV67 1664 aaKnown RBP21.04■□□□□ 0.96
PTPRF-214ENST00000496043 KIF21BO75037 1637 aa21.03■□□□□ 0.96
PTPRF-214ENST00000496043 FHOD3Q2V2M9 1422 aa21■□□□□ 0.95
PTPRF-214ENST00000496043 COL17A1Q9UMD9 1497 aaPredicted RBP21■□□□□ 0.95
PTPRF-214ENST00000496043 MAGI3Q5TCQ9 1506 aa20.98■□□□□ 0.95
PTPRF-214ENST00000496043 KDM4FA0A1W2PPD8 638 aa20.97■□□□□ 0.95
PTPRF-214ENST00000496043 RAPGEF6Q8TEU7 1601 aa20.96■□□□□ 0.95
PTPRF-214ENST00000496043 PLEKHD1A6NEE1 506 aa20.96■□□□□ 0.95
PTPRF-214ENST00000496043 CFAP43Q8NDM7 1665 aa20.93■□□□□ 0.94
PTPRF-214ENST00000496043 EFCAB5A4FU69 1503 aa20.93■□□□□ 0.94
PTPRF-214ENST00000496043 NUP153P49790 1475 aaKnown RBP20.92■□□□□ 0.94
PTPRF-214ENST00000496043 ATP1B4Q9UN42 357 aaPredicted RBP20.88■□□□□ 0.93
PTPRF-214ENST00000496043 PHLDB1Q86UU1 1377 aa20.87■□□□□ 0.93
PTPRF-214ENST00000496043 ABCA9Q8IUA7 1624 aa20.82■□□□□ 0.92
PTPRF-214ENST00000496043 FMN1Q68DA7 1419 aa20.81■□□□□ 0.92
PTPRF-214ENST00000496043 ARAP3Q8WWN8 1544 aa20.81■□□□□ 0.92
PTPRF-214ENST00000496043 ARHGAP35Q9NRY4 1499 aa20.8■□□□□ 0.92
PTPRF-214ENST00000496043 CDK11AQ9UQ88 783 aaPredicted RBP20.78■□□□□ 0.92
PTPRF-214ENST00000496043 RAPGEF3O95398 923 aa20.77■□□□□ 0.92
PTPRF-214ENST00000496043 NEO1Q92859 1461 aa20.76■□□□□ 0.91
PTPRF-214ENST00000496043 ADGRL1O94910 1474 aa20.75■□□□□ 0.91
PTPRF-214ENST00000496043 CDK13Q14004 1512 aaKnown RBP20.71■□□□□ 0.91
PTPRF-214ENST00000496043 AKNAQ7Z591 1439 aa20.69■□□□□ 0.9
PTPRF-214ENST00000496043 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.68■□□□□ 0.9
PTPRF-214ENST00000496043 HECW1Q76N89 1606 aa20.67■□□□□ 0.9
PTPRF-214ENST00000496043 FANCAO15360 1455 aa20.66■□□□□ 0.9
PTPRF-214ENST00000496043 DENND4BO75064 1496 aaPredicted RBP20.65■□□□□ 0.9
PTPRF-214ENST00000496043 EFCAB2Q5VUJ9 269 aa20.64■□□□□ 0.89
PTPRF-214ENST00000496043 PLCH2O75038 1416 aa20.63■□□□□ 0.89
PTPRF-214ENST00000496043 ARID4BQ4LE39 1312 aaPredicted RBP20.6■□□□□ 0.89
PTPRF-214ENST00000496043 TROQ12816 1431 aaPredicted RBP20.6■□□□□ 0.89
PTPRF-214ENST00000496043 CASKIN1Q8WXD9 1431 aa20.6■□□□□ 0.89
PTPRF-214ENST00000496043 TTC37Q6PGP7 1564 aa20.59■□□□□ 0.89
PTPRF-214ENST00000496043 CLIP1P30622 1438 aa20.59■□□□□ 0.89
PTPRF-214ENST00000496043 CFAP74Q9C0B2 1584 aa20.57■□□□□ 0.88
PTPRF-214ENST00000496043 SCAPERQ9BY12 1400 aa20.56■□□□□ 0.88
PTPRF-214ENST00000496043 FRMPD1Q5SYB0 1578 aa20.54■□□□□ 0.88
PTPRF-214ENST00000496043 CCDC18Q5T9S5 1454 aa20.53■□□□□ 0.88
PTPRF-214ENST00000496043 MAGI2Q86UL8 1455 aa20.5■□□□□ 0.87
PTPRF-214ENST00000496043 KIF14Q15058 1648 aa20.49■□□□□ 0.87
PTPRF-214ENST00000496043 RICTORQ6R327 1708 aa20.49■□□□□ 0.87
PTPRF-214ENST00000496043 FYCO1Q9BQS8 1478 aa20.48■□□□□ 0.87
PTPRF-214ENST00000496043 PCF11O94913 1555 aaKnown RBP20.47■□□□□ 0.87
PTPRF-214ENST00000496043 POGZQ7Z3K3 1410 aa20.46■□□□□ 0.87
PTPRF-214ENST00000496043 AFAP1Q8N556 730 aa20.46■□□□□ 0.87
PTPRF-214ENST00000496043 LRRIQ1Q96JM4 1722 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms