RNA–Protein interactions for RNA: ENST00000494956.1

NELFE-213, Transcript of negative elongation factor complex member E, humanhuman

TSL 3

Gene NELFE, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-213ENST00000494956 RUSC2Q8N2Y8 1516 aa18.32■□□□□ 0.52
NELFE-213ENST00000494956 CUL7Q14999 1698 aa18.31■□□□□ 0.52
NELFE-213ENST00000494956 TRHP20396 242 aaPredicted RBP18.31■□□□□ 0.52
NELFE-213ENST00000494956 JPH4Q96JJ6 628 aa18.29■□□□□ 0.52
NELFE-213ENST00000494956 PRG4Q92954 1404 aaPredicted RBP18.29■□□□□ 0.52
NELFE-213ENST00000494956 CARMIL1Q5VZK9 1371 aa18.27■□□□□ 0.51
NELFE-213ENST00000494956 KIAA0586Q9BVV6 1533 aa18.21■□□□□ 0.51
NELFE-213ENST00000494956 TTBK1Q5TCY1 1321 aaPredicted RBP18.11■□□□□ 0.49
NELFE-213ENST00000494956 RAPGEF2Q9Y4G8 1499 aa18.11■□□□□ 0.49
NELFE-213ENST00000494956 IQGAP2Q13576 1575 aa18.09■□□□□ 0.49
NELFE-213ENST00000494956 ADCY10Q96PN6 1610 aa18.08■□□□□ 0.48
NELFE-213ENST00000494956 KIF13AQ9H1H9 1805 aa18.02■□□□□ 0.48
NELFE-213ENST00000494956 PTPRGP23470 1445 aa18.01■□□□□ 0.47
NELFE-213ENST00000494956 DISP1Q96F81 1524 aa18.01■□□□□ 0.47
NELFE-213ENST00000494956 CTTNBP2Q8WZ74 1663 aa18■□□□□ 0.47
NELFE-213ENST00000494956 CARMIL2Q6F5E8 1435 aa17.99■□□□□ 0.47
NELFE-213ENST00000494956 PRXQ9BXM0 1461 aa17.99■□□□□ 0.47
NELFE-213ENST00000494956 TNIKQ9UKE5 1360 aa17.98■□□□□ 0.47
NELFE-213ENST00000494956 UGGT2Q9NYU1 1516 aa17.97■□□□□ 0.47
NELFE-213ENST00000494956 NPM1P06748 294 aaKnown RBP eCLIP17.96■□□□□ 0.47
NELFE-213ENST00000494956 KIAA0556O60303 1618 aa17.95■□□□□ 0.46
NELFE-213ENST00000494956 SENP3Q9H4L4 574 aaPredicted RBP17.94■□□□□ 0.46
NELFE-213ENST00000494956 MAPKBP1O60336 1514 aa17.93■□□□□ 0.46
NELFE-213ENST00000494956 FAM9AQ8IZU1 332 aaPredicted RBP17.92■□□□□ 0.46
NELFE-213ENST00000494956 ABCC10Q5T3U5 1492 aa17.91■□□□□ 0.46
NELFE-213ENST00000494956 FAM69CQ0P6D2 419 aa17.91■□□□□ 0.46
NELFE-213ENST00000494956 CSRNP3Q8WYN3 585 aa17.91■□□□□ 0.46
NELFE-213ENST00000494956 DIP2BQ9P265 1576 aa17.9■□□□□ 0.46
NELFE-213ENST00000494956 UACAQ9BZF9 1416 aa17.88■□□□□ 0.45
NELFE-213ENST00000494956 ABCC2Q92887 1545 aa17.88■□□□□ 0.45
NELFE-213ENST00000494956 UHRF1BP1LA0JNW5 1464 aa17.85■□□□□ 0.45
NELFE-213ENST00000494956 TSPOAP1O95153 1857 aa17.85■□□□□ 0.45
NELFE-213ENST00000494956 P3H3Q8IVL6 736 aa17.83■□□□□ 0.44
NELFE-213ENST00000494956 PLB1Q6P1J6 1458 aa17.82■□□□□ 0.44
NELFE-213ENST00000494956 ASXL2Q76L83 1435 aa17.82■□□□□ 0.44
NELFE-213ENST00000494956 ZCCHC11Q5TAX3 1644 aaKnown RBP17.81■□□□□ 0.44
NELFE-213ENST00000494956 EEA1Q15075 1411 aa17.81■□□□□ 0.44
NELFE-213ENST00000494956 GOLGA3Q08378 1498 aa17.8■□□□□ 0.44
NELFE-213ENST00000494956 KDM5BQ9UGL1 1544 aa17.79■□□□□ 0.44
NELFE-213ENST00000494956 RANGAP1P46060 587 aaPredicted RBP17.79■□□□□ 0.44
NELFE-213ENST00000494956 EHMT2Q96KQ7 1210 aa17.79■□□□□ 0.44
NELFE-213ENST00000494956 ABCA8O94911 1581 aa17.76■□□□□ 0.43
NELFE-213ENST00000494956 ARID3CA6NKF2 412 aa17.73■□□□□ 0.43
NELFE-213ENST00000494956 SAMD9Q5K651 1589 aa17.73■□□□□ 0.43
NELFE-213ENST00000494956 PPRC1Q5VV67 1664 aaKnown RBP17.73■□□□□ 0.43
NELFE-213ENST00000494956 KIF21BO75037 1637 aa17.72■□□□□ 0.43
NELFE-213ENST00000494956 EPRSP07814 1512 aaKnown RBP17.71■□□□□ 0.43
NELFE-213ENST00000494956 GLI2P10070 1586 aa17.7■□□□□ 0.42
NELFE-213ENST00000494956 KDM6BO15054 1643 aa17.69■□□□□ 0.42
NELFE-213ENST00000494956 FHOD3Q2V2M9 1422 aa17.66■□□□□ 0.42
NELFE-213ENST00000494956 MAP3K4Q9Y6R4 1608 aa17.66■□□□□ 0.42
NELFE-213ENST00000494956 WDR7Q9Y4E6 1490 aa17.66■□□□□ 0.42
NELFE-213ENST00000494956 KCNH8Q96L42 1107 aa17.64■□□□□ 0.41
NELFE-213ENST00000494956 RAPGEF6Q8TEU7 1601 aa17.63■□□□□ 0.41
NELFE-213ENST00000494956 ATP10BO94823 1461 aa17.63■□□□□ 0.41
NELFE-213ENST00000494956 UBTFP17480 764 aaKnown RBP17.61■□□□□ 0.41
NELFE-213ENST00000494956 COL17A1Q9UMD9 1497 aaPredicted RBP17.58■□□□□ 0.41
NELFE-213ENST00000494956 NUP153P49790 1475 aaKnown RBP17.56■□□□□ 0.4
NELFE-213ENST00000494956 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.55■□□□□ 0.4
NELFE-213ENST00000494956 HNRNPUL2Q1KMD3 747 aaKnown RBP17.55■□□□□ 0.4
NELFE-213ENST00000494956 CFAP43Q8NDM7 1665 aa17.55■□□□□ 0.4
NELFE-213ENST00000494956 EFCAB5A4FU69 1503 aa17.54■□□□□ 0.4
NELFE-213ENST00000494956 CD109Q6YHK3 1445 aa17.54■□□□□ 0.4
NELFE-213ENST00000494956 TEX14Q8IWB6 1497 aa17.52■□□□□ 0.4
NELFE-213ENST00000494956 ARHGAP35Q9NRY4 1499 aa17.5■□□□□ 0.39
NELFE-213ENST00000494956 MAGI3Q5TCQ9 1506 aa17.48■□□□□ 0.39
NELFE-213ENST00000494956 CDK13Q14004 1512 aaKnown RBP17.47■□□□□ 0.39
NELFE-213ENST00000494956 ABCA9Q8IUA7 1624 aa17.46■□□□□ 0.39
NELFE-213ENST00000494956 ATP1B4Q9UN42 357 aaPredicted RBP17.44■□□□□ 0.38
NELFE-213ENST00000494956 KDM4FA0A1W2PPD8 638 aa17.43■□□□□ 0.38
NELFE-213ENST00000494956 PLEKHD1A6NEE1 506 aa17.4■□□□□ 0.38
NELFE-213ENST00000494956 LRRIQ1Q96JM4 1722 aa17.4■□□□□ 0.38
NELFE-213ENST00000494956 FMN1Q68DA7 1419 aa17.38■□□□□ 0.37
NELFE-213ENST00000494956 HECW1Q76N89 1606 aa17.37■□□□□ 0.37
NELFE-213ENST00000494956 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.37■□□□□ 0.373e-7■□□□□ 8.5
NELFE-213ENST00000494956 TTC37Q6PGP7 1564 aa17.36■□□□□ 0.37
NELFE-213ENST00000494956 ARAP3Q8WWN8 1544 aa17.34■□□□□ 0.37
NELFE-213ENST00000494956 ADGRL1O94910 1474 aa17.33■□□□□ 0.37
NELFE-213ENST00000494956 RAPGEF3O95398 923 aa17.33■□□□□ 0.36
NELFE-213ENST00000494956 PCF11O94913 1555 aaKnown RBP17.32■□□□□ 0.36
NELFE-213ENST00000494956 FRMPD1Q5SYB0 1578 aa17.3■□□□□ 0.36
NELFE-213ENST00000494956 NEO1Q92859 1461 aa17.3■□□□□ 0.36
NELFE-213ENST00000494956 KIF14Q15058 1648 aa17.29■□□□□ 0.36
NELFE-213ENST00000494956 CLIP1P30622 1438 aa17.29■□□□□ 0.36
NELFE-213ENST00000494956 FANCAO15360 1455 aa17.26■□□□□ 0.35
NELFE-213ENST00000494956 AKNAQ7Z591 1439 aa17.26■□□□□ 0.35
NELFE-213ENST00000494956 CASKIN1Q8WXD9 1431 aa17.25■□□□□ 0.35
NELFE-213ENST00000494956 PHLDB1Q86UU1 1377 aa17.25■□□□□ 0.35
NELFE-213ENST00000494956 RICTORQ6R327 1708 aa17.24■□□□□ 0.35
NELFE-213ENST00000494956 TROQ12816 1431 aaPredicted RBP17.23■□□□□ 0.35
NELFE-213ENST00000494956 MYO5CQ9NQX4 1742 aa17.23■□□□□ 0.35
NELFE-213ENST00000494956 CFAP74Q9C0B2 1584 aa17.22■□□□□ 0.35
NELFE-213ENST00000494956 PLCH2O75038 1416 aa17.21■□□□□ 0.35
NELFE-213ENST00000494956 DENND4BO75064 1496 aaPredicted RBP17.21■□□□□ 0.35
NELFE-213ENST00000494956 CDK11AQ9UQ88 783 aaPredicted RBP17.21■□□□□ 0.35
NELFE-213ENST00000494956 LOC105371045A0A1W2PR82 267 aa17.19■□□□□ 0.34
NELFE-213ENST00000494956 FYCO1Q9BQS8 1478 aa17.18■□□□□ 0.34
NELFE-213ENST00000494956 PLPPR3Q6T4P5 718 aa17.18■□□□□ 0.34
NELFE-213ENST00000494956 CCDC18Q5T9S5 1454 aa17.18■□□□□ 0.34
NELFE-213ENST00000494956 CDC42BPBQ9Y5S2 1711 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms