RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 RAPGEF2Q9Y4G8 1499 aa26.7■■□□□ 1.87
LIME1-209ENST00000494776 KIAA0586Q9BVV6 1533 aa26.69■■□□□ 1.86
LIME1-209ENST00000494776 SHROOM2Q13796 1616 aa26.68■■□□□ 1.86
LIME1-209ENST00000494776 PRG4Q92954 1404 aaPredicted RBP26.66■■□□□ 1.86
LIME1-209ENST00000494776 ERCC6L2Q5T890 1561 aa26.64■■□□□ 1.86
LIME1-209ENST00000494776 CSRNP3Q8WYN3 585 aa26.61■■□□□ 1.85
LIME1-209ENST00000494776 EEA1Q15075 1411 aa26.59■■□□□ 1.85
LIME1-209ENST00000494776 FAM9AQ8IZU1 332 aaPredicted RBP26.58■■□□□ 1.85
LIME1-209ENST00000494776 PRXQ9BXM0 1461 aa26.55■■□□□ 1.84
LIME1-209ENST00000494776 IQGAP2Q13576 1575 aa26.52■■□□□ 1.84
LIME1-209ENST00000494776 TRHP20396 242 aaPredicted RBP26.49■■□□□ 1.83
LIME1-209ENST00000494776 CARMIL2Q6F5E8 1435 aa26.46■■□□□ 1.83
LIME1-209ENST00000494776 TTBK1Q5TCY1 1321 aaPredicted RBP26.41■■□□□ 1.82
LIME1-209ENST00000494776 CTTNBP2Q8WZ74 1663 aa26.4■■□□□ 1.82
LIME1-209ENST00000494776 UGGT2Q9NYU1 1516 aa26.36■■□□□ 1.81
LIME1-209ENST00000494776 TNIKQ9UKE5 1360 aa26.35■■□□□ 1.81
LIME1-209ENST00000494776 PTPRGP23470 1445 aa26.35■■□□□ 1.81
LIME1-209ENST00000494776 DISP1Q96F81 1524 aa26.32■■□□□ 1.8
LIME1-209ENST00000494776 NPM1P06748 294 aaKnown RBP eCLIP26.29■■□□□ 1.8
LIME1-209ENST00000494776 EHMT2Q96KQ7 1210 aa26.28■■□□□ 1.8
LIME1-209ENST00000494776 GOLGA3Q08378 1498 aa26.27■■□□□ 1.8
LIME1-209ENST00000494776 KIF21BO75037 1637 aa26.27■■□□□ 1.8
LIME1-209ENST00000494776 KIAA0556O60303 1618 aa26.25■■□□□ 1.79
LIME1-209ENST00000494776 RANGAP1P46060 587 aaPredicted RBP26.21■■□□□ 1.79
LIME1-209ENST00000494776 UBTFP17480 764 aaKnown RBP26.2■■□□□ 1.78
LIME1-209ENST00000494776 ADCY10Q96PN6 1610 aa26.19■■□□□ 1.78
LIME1-209ENST00000494776 P3H3Q8IVL6 736 aa26.17■■□□□ 1.78
LIME1-209ENST00000494776 UACAQ9BZF9 1416 aa26.15■■□□□ 1.78
LIME1-209ENST00000494776 UHRF1BP1LA0JNW5 1464 aa26.09■■□□□ 1.77
LIME1-209ENST00000494776 ABCC2Q92887 1545 aa26.08■■□□□ 1.77
LIME1-209ENST00000494776 SAMD9Q5K651 1589 aa26.04■■□□□ 1.76
LIME1-209ENST00000494776 PLB1Q6P1J6 1458 aa26.04■■□□□ 1.76
LIME1-209ENST00000494776 MAPKBP1O60336 1514 aa26.04■■□□□ 1.76
LIME1-209ENST00000494776 FAM69CQ0P6D2 419 aa25.98■■□□□ 1.75
LIME1-209ENST00000494776 FHOD3Q2V2M9 1422 aa25.97■■□□□ 1.75
LIME1-209ENST00000494776 ABCA8O94911 1581 aa25.96■■□□□ 1.75
LIME1-209ENST00000494776 EFCAB5A4FU69 1503 aa25.96■■□□□ 1.75
LIME1-209ENST00000494776 KDM5BQ9UGL1 1544 aa25.96■■□□□ 1.75
LIME1-209ENST00000494776 ABCC10Q5T3U5 1492 aa25.95■■□□□ 1.74
LIME1-209ENST00000494776 ASXL2Q76L83 1435 aa25.93■■□□□ 1.74
LIME1-209ENST00000494776 ZCCHC11Q5TAX3 1644 aaKnown RBP25.92■■□□□ 1.74
LIME1-209ENST00000494776 KIF13AQ9H1H9 1805 aa25.89■■□□□ 1.74
LIME1-209ENST00000494776 ARID3CA6NKF2 412 aa25.89■■□□□ 1.74
LIME1-209ENST00000494776 DIP2BQ9P265 1576 aa25.88■■□□□ 1.73
LIME1-209ENST00000494776 RAPGEF6Q8TEU7 1601 aa25.85■■□□□ 1.73
LIME1-209ENST00000494776 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.83■■□□□ 1.73
LIME1-209ENST00000494776 HNRNPUL2Q1KMD3 747 aaKnown RBP25.83■■□□□ 1.73
LIME1-209ENST00000494776 ARHGAP35Q9NRY4 1499 aa25.83■■□□□ 1.73
LIME1-209ENST00000494776 ATP10BO94823 1461 aa25.79■■□□□ 1.72
LIME1-209ENST00000494776 WDR7Q9Y4E6 1490 aa25.79■■□□□ 1.72
LIME1-209ENST00000494776 KCNH8Q96L42 1107 aa25.77■■□□□ 1.72
LIME1-209ENST00000494776 FMN1Q68DA7 1419 aa25.77■■□□□ 1.72
LIME1-209ENST00000494776 ATP1B4Q9UN42 357 aaPredicted RBP25.76■■□□□ 1.71
LIME1-209ENST00000494776 EPRSP07814 1512 aaKnown RBP25.76■■□□□ 1.71
LIME1-209ENST00000494776 NUP153P49790 1475 aaKnown RBP25.74■■□□□ 1.71
LIME1-209ENST00000494776 GLI2P10070 1586 aa25.73■■□□□ 1.71
LIME1-209ENST00000494776 CLIP1P30622 1438 aa25.71■■□□□ 1.71
LIME1-209ENST00000494776 TSPOAP1O95153 1857 aa25.7■■□□□ 1.71
LIME1-209ENST00000494776 LOC105371045A0A1W2PR82 267 aa25.67■■□□□ 1.7
LIME1-209ENST00000494776 PLEKHD1A6NEE1 506 aa25.64■■□□□ 1.7
LIME1-209ENST00000494776 HECW1Q76N89 1606 aa25.62■■□□□ 1.69
LIME1-209ENST00000494776 MAP3K4Q9Y6R4 1608 aa25.61■■□□□ 1.69
LIME1-209ENST00000494776 CD109Q6YHK3 1445 aa25.59■■□□□ 1.69
LIME1-209ENST00000494776 CDK13Q14004 1512 aaKnown RBP25.58■■□□□ 1.69
LIME1-209ENST00000494776 AEBP2Q6ZN18 517 aaPredicted RBP25.58■■□□□ 1.69
LIME1-209ENST00000494776 CEP162Q5TB80 1403 aa25.57■■□□□ 1.68
LIME1-209ENST00000494776 TEX14Q8IWB6 1497 aa25.56■■□□□ 1.68
LIME1-209ENST00000494776 CDK11AQ9UQ88 783 aaPredicted RBP25.55■■□□□ 1.68
LIME1-209ENST00000494776 CFAP43Q8NDM7 1665 aa25.55■■□□□ 1.68
LIME1-209ENST00000494776 PPRC1Q5VV67 1664 aaKnown RBP25.54■■□□□ 1.68
LIME1-209ENST00000494776 CASKIN1Q8WXD9 1431 aa25.54■■□□□ 1.68
LIME1-209ENST00000494776 KDM6BO15054 1643 aa25.52■■□□□ 1.68
LIME1-209ENST00000494776 PCF11O94913 1555 aaKnown RBP25.51■■□□□ 1.67
LIME1-209ENST00000494776 MAGI3Q5TCQ9 1506 aa25.48■■□□□ 1.67
LIME1-209ENST00000494776 ABCA9Q8IUA7 1624 aa25.48■■□□□ 1.67
LIME1-209ENST00000494776 FYCO1Q9BQS8 1478 aa25.47■■□□□ 1.67
LIME1-209ENST00000494776 CCDC18Q5T9S5 1454 aa25.46■■□□□ 1.67
LIME1-209ENST00000494776 LRRIQ1Q96JM4 1722 aa25.41■■□□□ 1.66
LIME1-209ENST00000494776 TROQ12816 1431 aaPredicted RBP25.38■■□□□ 1.65
LIME1-209ENST00000494776 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.38■■□□□ 1.65
LIME1-209ENST00000494776 COL17A1Q9UMD9 1497 aaPredicted RBP25.34■■□□□ 1.65
LIME1-209ENST00000494776 TTC37Q6PGP7 1564 aa25.33■■□□□ 1.65
LIME1-209ENST00000494776 KIF14Q15058 1648 aa25.33■■□□□ 1.65
LIME1-209ENST00000494776 PHLDB1Q86UU1 1377 aa25.32■■□□□ 1.64
LIME1-209ENST00000494776 NEO1Q92859 1461 aa25.3■■□□□ 1.64
LIME1-209ENST00000494776 FANCAO15360 1455 aa25.27■■□□□ 1.64
LIME1-209ENST00000494776 ARAP3Q8WWN8 1544 aa25.27■■□□□ 1.64
LIME1-209ENST00000494776 PLCH2O75038 1416 aa25.26■■□□□ 1.63
LIME1-209ENST00000494776 VPS8Q8N3P4 1428 aa25.26■■□□□ 1.63
LIME1-209ENST00000494776 MTUS2Q5JR59 1369 aa25.24■■□□□ 1.63
LIME1-209ENST00000494776 CFAP74Q9C0B2 1584 aa25.23■■□□□ 1.63
LIME1-209ENST00000494776 AKNAQ7Z591 1439 aa25.23■■□□□ 1.63
LIME1-209ENST00000494776 EFCAB2Q5VUJ9 269 aa25.22■■□□□ 1.63
LIME1-209ENST00000494776 MYO5CQ9NQX4 1742 aa25.21■■□□□ 1.63
LIME1-209ENST00000494776 RAPGEF3O95398 923 aa25.21■■□□□ 1.63
LIME1-209ENST00000494776 ARHGAP5Q13017 1502 aa25.17■■□□□ 1.62
LIME1-209ENST00000494776 DENND4BO75064 1496 aaPredicted RBP25.16■■□□□ 1.62
LIME1-209ENST00000494776 ADGRL1O94910 1474 aa25.14■■□□□ 1.61
LIME1-209ENST00000494776 EHBP1L1Q8N3D4 1523 aa25.12■■□□□ 1.61
LIME1-209ENST00000494776 SCAPERQ9BY12 1400 aa25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms