RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 RAPGEF2Q9Y4G8 1499 aa26.7■■□□□ 1.87
LIME1-209ENST00000494776 KIAA0586Q9BVV6 1533 aa26.69■■□□□ 1.86
LIME1-209ENST00000494776 SHROOM2Q13796 1616 aa26.68■■□□□ 1.86
LIME1-209ENST00000494776 PRG4Q92954 1404 aaPredicted RBP26.66■■□□□ 1.86
LIME1-209ENST00000494776 ERCC6L2Q5T890 1561 aa26.64■■□□□ 1.86
LIME1-209ENST00000494776 CSRNP3Q8WYN3 585 aa26.61■■□□□ 1.85
LIME1-209ENST00000494776 EEA1Q15075 1411 aa26.59■■□□□ 1.85
LIME1-209ENST00000494776 FAM9AQ8IZU1 332 aaPredicted RBP26.58■■□□□ 1.85
LIME1-209ENST00000494776 PRXQ9BXM0 1461 aa26.55■■□□□ 1.84
LIME1-209ENST00000494776 IQGAP2Q13576 1575 aa26.52■■□□□ 1.84
LIME1-209ENST00000494776 TRHP20396 242 aaPredicted RBP26.49■■□□□ 1.83
LIME1-209ENST00000494776 CARMIL2Q6F5E8 1435 aa26.46■■□□□ 1.83
LIME1-209ENST00000494776 TTBK1Q5TCY1 1321 aaPredicted RBP26.41■■□□□ 1.82
LIME1-209ENST00000494776 CTTNBP2Q8WZ74 1663 aa26.4■■□□□ 1.82
LIME1-209ENST00000494776 UGGT2Q9NYU1 1516 aa26.36■■□□□ 1.81
LIME1-209ENST00000494776 TNIKQ9UKE5 1360 aa26.35■■□□□ 1.81
LIME1-209ENST00000494776 PTPRGP23470 1445 aa26.35■■□□□ 1.81
LIME1-209ENST00000494776 DISP1Q96F81 1524 aa26.32■■□□□ 1.8
LIME1-209ENST00000494776 NPM1P06748 294 aaKnown RBP eCLIP26.29■■□□□ 1.8
LIME1-209ENST00000494776 EHMT2Q96KQ7 1210 aa26.28■■□□□ 1.8
LIME1-209ENST00000494776 GOLGA3Q08378 1498 aa26.27■■□□□ 1.8
LIME1-209ENST00000494776 KIF21BO75037 1637 aa26.27■■□□□ 1.8
LIME1-209ENST00000494776 KIAA0556O60303 1618 aa26.25■■□□□ 1.79
LIME1-209ENST00000494776 RANGAP1P46060 587 aaPredicted RBP26.21■■□□□ 1.79
LIME1-209ENST00000494776 UBTFP17480 764 aaKnown RBP26.2■■□□□ 1.78
LIME1-209ENST00000494776 ADCY10Q96PN6 1610 aa26.19■■□□□ 1.78
LIME1-209ENST00000494776 P3H3Q8IVL6 736 aa26.17■■□□□ 1.78
LIME1-209ENST00000494776 UACAQ9BZF9 1416 aa26.15■■□□□ 1.78
LIME1-209ENST00000494776 UHRF1BP1LA0JNW5 1464 aa26.09■■□□□ 1.77
LIME1-209ENST00000494776 ABCC2Q92887 1545 aa26.08■■□□□ 1.77
LIME1-209ENST00000494776 SAMD9Q5K651 1589 aa26.04■■□□□ 1.76
LIME1-209ENST00000494776 PLB1Q6P1J6 1458 aa26.04■■□□□ 1.76
LIME1-209ENST00000494776 MAPKBP1O60336 1514 aa26.04■■□□□ 1.76
LIME1-209ENST00000494776 FAM69CQ0P6D2 419 aa25.98■■□□□ 1.75
LIME1-209ENST00000494776 FHOD3Q2V2M9 1422 aa25.97■■□□□ 1.75
LIME1-209ENST00000494776 ABCA8O94911 1581 aa25.96■■□□□ 1.75
LIME1-209ENST00000494776 EFCAB5A4FU69 1503 aa25.96■■□□□ 1.75
LIME1-209ENST00000494776 KDM5BQ9UGL1 1544 aa25.96■■□□□ 1.75
LIME1-209ENST00000494776 ABCC10Q5T3U5 1492 aa25.95■■□□□ 1.74
LIME1-209ENST00000494776 ASXL2Q76L83 1435 aa25.93■■□□□ 1.74
LIME1-209ENST00000494776 ZCCHC11Q5TAX3 1644 aaKnown RBP25.92■■□□□ 1.74
LIME1-209ENST00000494776 KIF13AQ9H1H9 1805 aa25.89■■□□□ 1.74
LIME1-209ENST00000494776 ARID3CA6NKF2 412 aa25.89■■□□□ 1.74
LIME1-209ENST00000494776 DIP2BQ9P265 1576 aa25.88■■□□□ 1.73
LIME1-209ENST00000494776 RAPGEF6Q8TEU7 1601 aa25.85■■□□□ 1.73
LIME1-209ENST00000494776 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.83■■□□□ 1.73
LIME1-209ENST00000494776 HNRNPUL2Q1KMD3 747 aaKnown RBP25.83■■□□□ 1.73
LIME1-209ENST00000494776 ARHGAP35Q9NRY4 1499 aa25.83■■□□□ 1.73
LIME1-209ENST00000494776 ATP10BO94823 1461 aa25.79■■□□□ 1.72
LIME1-209ENST00000494776 WDR7Q9Y4E6 1490 aa25.79■■□□□ 1.72
LIME1-209ENST00000494776 KCNH8Q96L42 1107 aa25.77■■□□□ 1.72
LIME1-209ENST00000494776 FMN1Q68DA7 1419 aa25.77■■□□□ 1.72
LIME1-209ENST00000494776 ATP1B4Q9UN42 357 aaPredicted RBP25.76■■□□□ 1.71
LIME1-209ENST00000494776 EPRSP07814 1512 aaKnown RBP25.76■■□□□ 1.71
LIME1-209ENST00000494776 NUP153P49790 1475 aaKnown RBP25.74■■□□□ 1.71
LIME1-209ENST00000494776 GLI2P10070 1586 aa25.73■■□□□ 1.71
LIME1-209ENST00000494776 CLIP1P30622 1438 aa25.71■■□□□ 1.71
LIME1-209ENST00000494776 TSPOAP1O95153 1857 aa25.7■■□□□ 1.71
LIME1-209ENST00000494776 LOC105371045A0A1W2PR82 267 aa25.67■■□□□ 1.7
LIME1-209ENST00000494776 PLEKHD1A6NEE1 506 aa25.64■■□□□ 1.7
LIME1-209ENST00000494776 HECW1Q76N89 1606 aa25.62■■□□□ 1.69
LIME1-209ENST00000494776 MAP3K4Q9Y6R4 1608 aa25.61■■□□□ 1.69
LIME1-209ENST00000494776 CD109Q6YHK3 1445 aa25.59■■□□□ 1.69
LIME1-209ENST00000494776 CDK13Q14004 1512 aaKnown RBP25.58■■□□□ 1.69
LIME1-209ENST00000494776 AEBP2Q6ZN18 517 aaPredicted RBP25.58■■□□□ 1.69
LIME1-209ENST00000494776 CEP162Q5TB80 1403 aa25.57■■□□□ 1.68
LIME1-209ENST00000494776 TEX14Q8IWB6 1497 aa25.56■■□□□ 1.68
LIME1-209ENST00000494776 CDK11AQ9UQ88 783 aaPredicted RBP25.55■■□□□ 1.68
LIME1-209ENST00000494776 CFAP43Q8NDM7 1665 aa25.55■■□□□ 1.68
LIME1-209ENST00000494776 PPRC1Q5VV67 1664 aaKnown RBP25.54■■□□□ 1.68
LIME1-209ENST00000494776 CASKIN1Q8WXD9 1431 aa25.54■■□□□ 1.68
LIME1-209ENST00000494776 KDM6BO15054 1643 aa25.52■■□□□ 1.68
LIME1-209ENST00000494776 PCF11O94913 1555 aaKnown RBP25.51■■□□□ 1.67
LIME1-209ENST00000494776 MAGI3Q5TCQ9 1506 aa25.48■■□□□ 1.67
LIME1-209ENST00000494776 ABCA9Q8IUA7 1624 aa25.48■■□□□ 1.67
LIME1-209ENST00000494776 FYCO1Q9BQS8 1478 aa25.47■■□□□ 1.67
LIME1-209ENST00000494776 CCDC18Q5T9S5 1454 aa25.46■■□□□ 1.67
LIME1-209ENST00000494776 LRRIQ1Q96JM4 1722 aa25.41■■□□□ 1.66
LIME1-209ENST00000494776 TROQ12816 1431 aaPredicted RBP25.38■■□□□ 1.65
LIME1-209ENST00000494776 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.38■■□□□ 1.65
LIME1-209ENST00000494776 COL17A1Q9UMD9 1497 aaPredicted RBP25.34■■□□□ 1.65
LIME1-209ENST00000494776 TTC37Q6PGP7 1564 aa25.33■■□□□ 1.65
LIME1-209ENST00000494776 KIF14Q15058 1648 aa25.33■■□□□ 1.65
LIME1-209ENST00000494776 PHLDB1Q86UU1 1377 aa25.32■■□□□ 1.64
LIME1-209ENST00000494776 NEO1Q92859 1461 aa25.3■■□□□ 1.64
LIME1-209ENST00000494776 FANCAO15360 1455 aa25.27■■□□□ 1.64
LIME1-209ENST00000494776 ARAP3Q8WWN8 1544 aa25.27■■□□□ 1.64
LIME1-209ENST00000494776 PLCH2O75038 1416 aa25.26■■□□□ 1.63
LIME1-209ENST00000494776 VPS8Q8N3P4 1428 aa25.26■■□□□ 1.63
LIME1-209ENST00000494776 MTUS2Q5JR59 1369 aa25.24■■□□□ 1.63
LIME1-209ENST00000494776 CFAP74Q9C0B2 1584 aa25.23■■□□□ 1.63
LIME1-209ENST00000494776 AKNAQ7Z591 1439 aa25.23■■□□□ 1.63
LIME1-209ENST00000494776 EFCAB2Q5VUJ9 269 aa25.22■■□□□ 1.63
LIME1-209ENST00000494776 MYO5CQ9NQX4 1742 aa25.21■■□□□ 1.63
LIME1-209ENST00000494776 RAPGEF3O95398 923 aa25.21■■□□□ 1.63
LIME1-209ENST00000494776 ARHGAP5Q13017 1502 aa25.17■■□□□ 1.62
LIME1-209ENST00000494776 DENND4BO75064 1496 aaPredicted RBP25.16■■□□□ 1.62
LIME1-209ENST00000494776 ADGRL1O94910 1474 aa25.14■■□□□ 1.61
LIME1-209ENST00000494776 EHBP1L1Q8N3D4 1523 aa25.12■■□□□ 1.61
LIME1-209ENST00000494776 SCAPERQ9BY12 1400 aa25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms