RNA–Protein interactions for RNA: ENST00000494333.1

RIF1-211, Transcript of replication timing regulatory factor 1, humanhuman

TSL 3

Gene RIF1, Length 743 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-211ENST00000494333 SPOCK2Q92563 424 aa15.53■□□□□ 0.08
RIF1-211ENST00000494333 AMER1Q5JTC6 1135 aaPredicted RBP15.51■□□□□ 0.07
RIF1-211ENST00000494333 RTN4Q9NQC3 1192 aaKnown RBP15.51■□□□□ 0.07
RIF1-211ENST00000494333 FARP1Q9Y4F1 1045 aaPredicted RBP15.45■□□□□ 0.06
RIF1-211ENST00000494333 NPM1P06748 294 aaKnown RBP eCLIP15.41■□□□□ 0.06
RIF1-211ENST00000494333 NUBP1P53384 320 aa15.39■□□□□ 0.05
RIF1-211ENST00000494333 NCAPD3P42695 1498 aa15.35■□□□□ 0.05
RIF1-211ENST00000494333 ATAD2BQ9ULI0 1458 aa15.32■□□□□ 0.04
RIF1-211ENST00000494333 RASEFQ8IZ41 740 aa15.31■□□□□ 0.04
RIF1-211ENST00000494333 SMARCA4P51532 1647 aa15.29■□□□□ 0.04
RIF1-211ENST00000494333 PKD2Q13563 968 aa15.28■□□□□ 0.04
RIF1-211ENST00000494333 CIZ1Q9ULV3 898 aaPredicted RBP15.28■□□□□ 0.04
RIF1-211ENST00000494333 BAZ1AQ9NRL2 1556 aaPredicted RBP15.27■□□□□ 0.03
RIF1-211ENST00000494333 SMARCA2P51531 1590 aa15.25■□□□□ 0.03
RIF1-211ENST00000494333 DCAF8Q5TAQ9 597 aa15.25■□□□□ 0.03
RIF1-211ENST00000494333 FAM212AQ96EL1 285 aa15.24■□□□□ 0.03
RIF1-211ENST00000494333 GSE1Q14687 1217 aa15.23■□□□□ 0.03
RIF1-211ENST00000494333 MROH2BQ7Z745 1585 aa15.19■□□□□ 0.02
RIF1-211ENST00000494333 TSPYL2Q9H2G4 693 aaPredicted RBP15.19■□□□□ 0.02
RIF1-211ENST00000494333 HMGXB3Q12766 1538 aa15.18■□□□□ 0.02
RIF1-211ENST00000494333 BAZ1BQ9UIG0 1483 aaKnown RBP15.17■□□□□ 0.02
RIF1-211ENST00000494333 ECM2O94769 699 aaPredicted RBP15.15■□□□□ 0.02
RIF1-211ENST00000494333 PEG3Q9GZU2 1588 aa15.13■□□□□ 0.01
RIF1-211ENST00000494333 CD44P16070 742 aaKnown RBP15.12■□□□□ 0.01
RIF1-211ENST00000494333 C19orf67A6NJJ6 358 aa15.1■□□□□ 0.01
RIF1-211ENST00000494333 PAK3O75914 559 aaPredicted RBP15.1■□□□□ 0.01
RIF1-211ENST00000494333 POTEHQ6S545 545 aa15.1■□□□□ 0.01
RIF1-211ENST00000494333 TRIM41Q8WV44 630 aa15.1■□□□□ 0.01
RIF1-211ENST00000494333 ERCC6Q03468 1493 aa15.07■□□□□ 0
RIF1-211ENST00000494333 CCDC61Q9Y6R9 512 aa15.06■□□□□ 0
RIF1-211ENST00000494333 ZRANB1Q9UGI0 708 aa15.05■□□□□ -0
RIF1-211ENST00000494333 NESP48681 1621 aa15.05■□□□□ -0
RIF1-211ENST00000494333 HAX1O00165 279 aa15.04■□□□□ -0
RIF1-211ENST00000494333 PYGBP11216 843 aa15.04■□□□□ -0
RIF1-211ENST00000494333 CHRM1P11229 460 aaPredicted RBP15.03■□□□□ -0
RIF1-211ENST00000494333 RGL2O15211 777 aa15.02■□□□□ -0
RIF1-211ENST00000494333 WIZO95785 1651 aa14.99□□□□□ -0.01
RIF1-211ENST00000494333 RSF1Q96T23 1441 aaPredicted RBP14.98□□□□□ -0.01
RIF1-211ENST00000494333 EVX2Q03828 476 aa14.95□□□□□ -0.02
RIF1-211ENST00000494333 RNF25Q96BH1 459 aaPredicted RBP14.95□□□□□ -0.02
RIF1-211ENST00000494333 CUX2O14529 1486 aa14.95□□□□□ -0.02
RIF1-211ENST00000494333 PHF12Q96QT6 1004 aa14.94□□□□□ -0.02
RIF1-211ENST00000494333 ZNF579Q8NAF0 562 aaKnown RBP14.92□□□□□ -0.02
RIF1-211ENST00000494333 CADPSQ9ULU8 1353 aa14.92□□□□□ -0.02
RIF1-211ENST00000494333 LAMC3Q9Y6N6 1575 aa14.92□□□□□ -0.02
RIF1-211ENST00000494333 KIF12Q96FN5 646 aa14.91□□□□□ -0.02
RIF1-211ENST00000494333 PDS5BQ9NTI5 1447 aa14.9□□□□□ -0.02
RIF1-211ENST00000494333 RIOK3O14730 519 aaKnown RBP14.88□□□□□ -0.03
RIF1-211ENST00000494333 MAP3K13O43283 966 aa14.88□□□□□ -0.03
RIF1-211ENST00000494333 PCDHB13Q9Y5F0 798 aa14.85□□□□□ -0.03
RIF1-211ENST00000494333 PCDHB8Q9UN66 801 aa14.84□□□□□ -0.03
RIF1-211ENST00000494333 DNAJC5Q9H3Z4 198 aa14.83□□□□□ -0.04
RIF1-211ENST00000494333 ZNF467Q7Z7K2 595 aaPredicted RBP14.82□□□□□ -0.04
RIF1-211ENST00000494333 SGIP1Q9BQI5 828 aa14.82□□□□□ -0.04
RIF1-211ENST00000494333 IFNL1Q8IU54 200 aa14.81□□□□□ -0.04
RIF1-211ENST00000494333 TOP2AP11388 1531 aaKnown RBP14.81□□□□□ -0.04
RIF1-211ENST00000494333 THOC2Q8NI27 1593 aaKnown RBP14.77□□□□□ -0.04
RIF1-211ENST00000494333 VGFO15240 615 aaPredicted RBP14.77□□□□□ -0.05
RIF1-211ENST00000494333 MS4A3Q96HJ5 214 aa14.76□□□□□ -0.05
RIF1-211ENST00000494333 TAOK2Q9UL54 1235 aa14.76□□□□□ -0.05
RIF1-211ENST00000494333 KIF21AQ7Z4S6 1674 aa14.76□□□□□ -0.05
RIF1-211ENST00000494333 CFTRP13569 1480 aa14.76□□□□□ -0.05
RIF1-211ENST00000494333 CHGAP10645 457 aaKnown RBP14.73□□□□□ -0.05
RIF1-211ENST00000494333 FANCD2Q9BXW9 1451 aa14.72□□□□□ -0.05
RIF1-211ENST00000494333 MRC2Q9UBG0 1479 aa14.72□□□□□ -0.05
RIF1-211ENST00000494333 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.71□□□□□ -0.05
RIF1-211ENST00000494333 ZFP91Q96JP5 570 aaPredicted RBP14.71□□□□□ -0.05
RIF1-211ENST00000494333 CEP164Q9UPV0 1460 aa14.7□□□□□ -0.06
RIF1-211ENST00000494333 PDAP1Q13442 181 aaKnown RBP14.7□□□□□ -0.06
RIF1-211ENST00000494333 CCDC88BA6NC98 1476 aa14.69□□□□□ -0.06
RIF1-211ENST00000494333 CLCN6P51797 869 aa14.69□□□□□ -0.06
RIF1-211ENST00000494333 GALR2O43603 387 aaPredicted RBP14.68□□□□□ -0.06
RIF1-211ENST00000494333 PSEN1P49768 467 aa14.68□□□□□ -0.06
RIF1-211ENST00000494333 HS6ST3Q8IZP7 471 aa14.68□□□□□ -0.06
RIF1-211ENST00000494333 STK25O00506 426 aa14.67□□□□□ -0.06
RIF1-211ENST00000494333 TRPC6Q9Y210 931 aa14.67□□□□□ -0.06
RIF1-211ENST00000494333 GABBR2O75899 941 aa14.64□□□□□ -0.07
RIF1-211ENST00000494333 BCL11BQ9C0K0 894 aaPredicted RBP14.64□□□□□ -0.07
RIF1-211ENST00000494333 WDR62O43379 1518 aa14.64□□□□□ -0.07
RIF1-211ENST00000494333 STK24Q9Y6E0 443 aa14.62□□□□□ -0.07
RIF1-211ENST00000494333 SP7Q8TDD2 431 aaPredicted RBP14.59□□□□□ -0.07
RIF1-211ENST00000494333 BBXQ8WY36 941 aaPredicted RBP14.59□□□□□ -0.07
RIF1-211ENST00000494333 URB2Q14146 1524 aaKnown RBP14.56□□□□□ -0.08
RIF1-211ENST00000494333 TIE1P35590 1138 aa14.56□□□□□ -0.08
RIF1-211ENST00000494333 TMEM106CQ9BVX2 250 aa14.56□□□□□ -0.08
RIF1-211ENST00000494333 SUPT5HO00267 1087 aaKnown RBP14.55□□□□□ -0.08
RIF1-211ENST00000494333 BMP2KQ9NSY1 1161 aaPredicted RBP14.53□□□□□ -0.08
RIF1-211ENST00000494333 TTLL13PA6NNM8 815 aa14.52□□□□□ -0.09
RIF1-211ENST00000494333 NKX1-1Q15270 411 aaPredicted RBP14.5□□□□□ -0.09
RIF1-211ENST00000494333 CABP2Q9NPB3 220 aa14.5□□□□□ -0.09
RIF1-211ENST00000494333 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.5□□□□□ -0.09
RIF1-211ENST00000494333 PRDM2Q13029 1718 aa14.45□□□□□ -0.1
RIF1-211ENST00000494333 ASTLQ6HA08 431 aaPredicted RBP14.45□□□□□ -0.1
RIF1-211ENST00000494333 ATMINO43313 823 aaPredicted RBP14.44□□□□□ -0.1
RIF1-211ENST00000494333 EFCAB3Q8N7B9 438 aa14.44□□□□□ -0.1
RIF1-211ENST00000494333 TOPBP1Q92547 1522 aa14.44□□□□□ -0.1
RIF1-211ENST00000494333 ABCC8Q09428 1581 aa14.43□□□□□ -0.1
RIF1-211ENST00000494333 ATN1P54259 1190 aaPredicted RBP14.43□□□□□ -0.1
RIF1-211ENST00000494333 DCBLD2Q96PD2 775 aa14.43□□□□□ -0.1
RIF1-211ENST00000494333 GOLGA2Q08379 1002 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 130.9 ms