RNA–Protein interactions for RNA: ENST00000493587.1

VPS13B-205, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 2

Gene VPS13B, Length 3,485 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-205ENST00000493587 CLSPNQ9HAW4 1339 aa9.91□□□□□ -0.82
VPS13B-205ENST00000493587 CEP164Q9UPV0 1460 aa9.91□□□□□ -0.82
VPS13B-205ENST00000493587 RBM19Q9Y4C8 960 aaKnown RBP9.9□□□□□ -0.82
VPS13B-205ENST00000493587 RAPGEF2Q9Y4G8 1499 aa9.89□□□□□ -0.83
VPS13B-205ENST00000493587 ERICH6BQ5W0A0 696 aa9.89□□□□□ -0.83
VPS13B-205ENST00000493587 CEP162Q5TB80 1403 aa9.89□□□□□ -0.83
VPS13B-205ENST00000493587 CFAP43Q8NDM7 1665 aa9.88□□□□□ -0.83
VPS13B-205ENST00000493587 ZNF316A6NFI3 1004 aaPredicted RBP9.88□□□□□ -0.83
VPS13B-205ENST00000493587 CUL7Q14999 1698 aa9.88□□□□□ -0.83
VPS13B-205ENST00000493587 ARAP1Q96P48 1450 aa9.87□□□□□ -0.83
VPS13B-205ENST00000493587 ABCA10Q8WWZ4 1543 aa9.86□□□□□ -0.83
VPS13B-205ENST00000493587 PBRM1Q86U86 1689 aa9.86□□□□□ -0.83
VPS13B-205ENST00000493587 CADPSQ9ULU8 1353 aa9.85□□□□□ -0.83
VPS13B-205ENST00000493587 SAMD9Q5K651 1589 aa9.83□□□□□ -0.84
VPS13B-205ENST00000493587 URB2Q14146 1524 aaKnown RBP9.82□□□□□ -0.84
VPS13B-205ENST00000493587 NBR1Q14596 966 aa9.82□□□□□ -0.84
VPS13B-205ENST00000493587 TOPBP1Q92547 1522 aa9.82□□□□□ -0.84
VPS13B-205ENST00000493587 MAP3K1Q13233 1512 aa9.81□□□□□ -0.84
VPS13B-205ENST00000493587 FGD5Q6ZNL6 1462 aa9.81□□□□□ -0.84
VPS13B-205ENST00000493587 NEFLP07196 543 aa9.79□□□□□ -0.84
VPS13B-205ENST00000493587 EHMT2Q96KQ7 1210 aa9.79□□□□□ -0.84
VPS13B-205ENST00000493587 MSH5O43196 834 aa9.78□□□□□ -0.84
VPS13B-205ENST00000493587 FANCD2Q9BXW9 1451 aa9.78□□□□□ -0.84
VPS13B-205ENST00000493587 THOC2Q8NI27 1593 aaKnown RBP9.77□□□□□ -0.84
VPS13B-205ENST00000493587 POLA1P09884 1462 aaPredicted RBP9.77□□□□□ -0.84
VPS13B-205ENST00000493587 GLIPR1L2Q4G1C9 344 aa9.77□□□□□ -0.84
VPS13B-205ENST00000493587 RTL5Q5HYW3 569 aaPredicted RBP9.77□□□□□ -0.84
VPS13B-205ENST00000493587 IL27Q8NEV9 243 aa9.77□□□□□ -0.84
VPS13B-205ENST00000493587 FKBP8Q14318 412 aa9.77□□□□□ -0.85
VPS13B-205ENST00000493587 NESP48681 1621 aa9.77□□□□□ -0.85
VPS13B-205ENST00000493587 ITGAEP38570 1179 aa9.76□□□□□ -0.85
VPS13B-205ENST00000493587 VPS8Q8N3P4 1428 aa9.75□□□□□ -0.85
VPS13B-205ENST00000493587 ARHGAP35Q9NRY4 1499 aa9.75□□□□□ -0.85
VPS13B-205ENST00000493587 CLIP1P30622 1438 aa9.75□□□□□ -0.85
VPS13B-205ENST00000493587 CUX2O14529 1486 aa9.75□□□□□ -0.85
VPS13B-205ENST00000493587 WDR62O43379 1518 aa9.75□□□□□ -0.85
VPS13B-205ENST00000493587 A0A0U1RQG5 324 aaPredicted RBP9.74□□□□□ -0.85
VPS13B-205ENST00000493587 DNAJC5BQ9UF47 199 aa9.74□□□□□ -0.85
VPS13B-205ENST00000493587 IGF1RP08069 1367 aa9.72□□□□□ -0.85
VPS13B-205ENST00000493587 ADAMTS12P58397 1594 aa9.7□□□□□ -0.86
VPS13B-205ENST00000493587 VSIG10Q8N0Z9 540 aa9.7□□□□□ -0.86
VPS13B-205ENST00000493587 TIMELESSQ9UNS1 1208 aa9.69□□□□□ -0.86
VPS13B-205ENST00000493587 KIF27Q86VH2 1401 aa9.69□□□□□ -0.86
VPS13B-205ENST00000493587 TIAM1Q13009 1591 aa9.69□□□□□ -0.86
VPS13B-205ENST00000493587 EFCAB5A4FU69 1503 aa9.68□□□□□ -0.86
VPS13B-205ENST00000493587 PCF11O94913 1555 aaKnown RBP9.68□□□□□ -0.86
VPS13B-205ENST00000493587 SNAPC4Q5SXM2 1469 aa9.67□□□□□ -0.86
VPS13B-205ENST00000493587 ARHGEF11O15085 1522 aa9.67□□□□□ -0.86
VPS13B-205ENST00000493587 AQRO60306 1485 aaKnown RBP eCLIP9.67□□□□□ -0.869e-7■■■■■ 29.7
VPS13B-205ENST00000493587 CDK11AQ9UQ88 783 aaPredicted RBP9.65□□□□□ -0.86
VPS13B-205ENST00000493587 RRBP1Q9P2E9 1410 aaKnown RBP9.65□□□□□ -0.86
VPS13B-205ENST00000493587 RAD54L2Q9Y4B4 1467 aa9.63□□□□□ -0.87
VPS13B-205ENST00000493587 ZMYND15Q9H091 742 aa9.63□□□□□ -0.87
VPS13B-205ENST00000493587 PDE4CQ08493 712 aa9.62□□□□□ -0.87
VPS13B-205ENST00000493587 FANCIQ9NVI1 1328 aa9.62□□□□□ -0.87
VPS13B-205ENST00000493587 EIF4G3O43432 1585 aaKnown RBP9.59□□□□□ -0.87
VPS13B-205ENST00000493587 GRIN2BQ13224 1484 aa9.57□□□□□ -0.88
VPS13B-205ENST00000493587 FYCO1Q9BQS8 1478 aa9.57□□□□□ -0.88
VPS13B-205ENST00000493587 MRC2Q9UBG0 1479 aa9.56□□□□□ -0.88
VPS13B-205ENST00000493587 NOP58Q9Y2X3 529 aaKnown RBP9.56□□□□□ -0.88
VPS13B-205ENST00000493587 UGGT2Q9NYU1 1516 aa9.56□□□□□ -0.88
VPS13B-205ENST00000493587 ADCY10Q96PN6 1610 aa9.55□□□□□ -0.88
VPS13B-205ENST00000493587 MAGI3Q5TCQ9 1506 aa9.55□□□□□ -0.88
VPS13B-205ENST00000493587 PDIA4P13667 645 aaKnown RBP9.54□□□□□ -0.88
VPS13B-205ENST00000493587 GCC2Q8IWJ2 1684 aa9.53□□□□□ -0.88
VPS13B-205ENST00000493587 AEBP2Q6ZN18 517 aaPredicted RBP9.52□□□□□ -0.88
VPS13B-205ENST00000493587 LRRC9Q6ZRR7 1453 aa9.52□□□□□ -0.89
VPS13B-205ENST00000493587 SHROOM2Q13796 1616 aa9.52□□□□□ -0.89
VPS13B-205ENST00000493587 PDS5BQ9NTI5 1447 aa9.52□□□□□ -0.89
VPS13B-205ENST00000493587 CARMIL1Q5VZK9 1371 aa9.51□□□□□ -0.89
VPS13B-205ENST00000493587 GAPVD1Q14C86 1478 aa9.51□□□□□ -0.89
VPS13B-205ENST00000493587 CASKIN1Q8WXD9 1431 aa9.5□□□□□ -0.89
VPS13B-205ENST00000493587 CEP170Q5SW79 1584 aa9.5□□□□□ -0.89
VPS13B-205ENST00000493587 KIAA0556O60303 1618 aa9.5□□□□□ -0.89
VPS13B-205ENST00000493587 CROCC2H7BZ55 1655 aa9.5□□□□□ -0.89
VPS13B-205ENST00000493587 MAPKBP1O60336 1514 aa9.5□□□□□ -0.89
VPS13B-205ENST00000493587 IQGAP2Q13576 1575 aa9.49□□□□□ -0.89
VPS13B-205ENST00000493587 RSPH6AQ9H0K4 717 aa9.49□□□□□ -0.89
VPS13B-205ENST00000493587 RBM10P98175 930 aaKnown RBP9.48□□□□□ -0.89
VPS13B-205ENST00000493587 BCL11BQ9C0K0 894 aaPredicted RBP9.48□□□□□ -0.89
VPS13B-205ENST00000493587 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.48□□□□□ -0.89
VPS13B-205ENST00000493587 DISP1Q96F81 1524 aa9.47□□□□□ -0.89
VPS13B-205ENST00000493587 IFT140Q96RY7 1462 aa9.47□□□□□ -0.89
VPS13B-205ENST00000493587 NEFMP07197 916 aa9.46□□□□□ -0.89
VPS13B-205ENST00000493587 FGD1P98174 961 aa9.46□□□□□ -0.9
VPS13B-205ENST00000493587 KDM5BQ9UGL1 1544 aa9.46□□□□□ -0.9
VPS13B-205ENST00000493587 BRPF3Q9ULD4 1205 aa9.45□□□□□ -0.9
VPS13B-205ENST00000493587 TCOF1Q13428 1488 aaKnown RBP9.45□□□□□ -0.9
VPS13B-205ENST00000493587 SUPT6HQ7KZ85 1726 aaKnown RBP9.45□□□□□ -0.9
VPS13B-205ENST00000493587 PAK3O75914 559 aaPredicted RBP9.45□□□□□ -0.9
VPS13B-205ENST00000493587 RANGAP1P46060 587 aaPredicted RBP9.45□□□□□ -0.9
VPS13B-205ENST00000493587 ZNF608Q9ULD9 1512 aaPredicted RBP9.44□□□□□ -0.9
VPS13B-205ENST00000493587 ZBTB47Q9UFB7 747 aaPredicted RBP9.44□□□□□ -0.9
VPS13B-205ENST00000493587 IRX6P78412 446 aaPredicted RBP9.44□□□□□ -0.9
VPS13B-205ENST00000493587 ANP32AP39687 249 aaKnown RBP9.43□□□□□ -0.9
VPS13B-205ENST00000493587 HECW1Q76N89 1606 aa9.43□□□□□ -0.9
VPS13B-205ENST00000493587 FHAD1B1AJZ9 1412 aa9.43□□□□□ -0.9
VPS13B-205ENST00000493587 DENND4BO75064 1496 aaPredicted RBP9.41□□□□□ -0.9
VPS13B-205ENST00000493587 EHBP1L1Q8N3D4 1523 aa9.41□□□□□ -0.9
VPS13B-205ENST00000493587 AAMPQ13685 434 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms