RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 WIZO95785 1651 aa17.51■□□□□ 0.39
SHOX2-205ENST00000490689 RTN4Q9NQC3 1192 aaKnown RBP17.49■□□□□ 0.39
SHOX2-205ENST00000490689 MYT1LQ9UL68 1186 aa17.47■□□□□ 0.39
SHOX2-205ENST00000490689 CCNB3Q8WWL7 1395 aa17.47■□□□□ 0.39
SHOX2-205ENST00000490689 DHX57Q6P158 1386 aaKnown RBP17.47■□□□□ 0.39
SHOX2-205ENST00000490689 DEKP35659 375 aaKnown RBP17.46■□□□□ 0.39
SHOX2-205ENST00000490689 RRP7BPQ9NSQ0 103 aa17.43■□□□□ 0.38
SHOX2-205ENST00000490689 PPP4R2Q9NY27 417 aa17.42■□□□□ 0.38
SHOX2-205ENST00000490689 EIF4G2P78344 907 aaKnown RBP eCLIP17.41■□□□□ 0.387e-7■■□□□ 12.9
SHOX2-205ENST00000490689 BAZ1AQ9NRL2 1556 aaPredicted RBP17.39■□□□□ 0.37
SHOX2-205ENST00000490689 RAB3GAP2Q9H2M9 1393 aa17.38■□□□□ 0.37
SHOX2-205ENST00000490689 TMC1Q8TDI8 760 aa17.38■□□□□ 0.37
SHOX2-205ENST00000490689 NOP58Q9Y2X3 529 aaKnown RBP17.38■□□□□ 0.37
SHOX2-205ENST00000490689 CCER2I3L3R5 266 aa17.37■□□□□ 0.37
SHOX2-205ENST00000490689 LAS1LQ9Y4W2 734 aaKnown RBP17.35■□□□□ 0.37
SHOX2-205ENST00000490689 ZNF777Q9ULD5 760 aaPredicted RBP17.32■□□□□ 0.36
SHOX2-205ENST00000490689 MTUS2Q5JR59 1369 aa17.31■□□□□ 0.36
SHOX2-205ENST00000490689 RAPGEF2Q9Y4G8 1499 aa17.31■□□□□ 0.36
SHOX2-205ENST00000490689 SLC4A1APQ9BWU0 796 aaKnown RBP17.29■□□□□ 0.36
SHOX2-205ENST00000490689 PPP1R15AO75807 674 aaPredicted RBP17.28■□□□□ 0.36
SHOX2-205ENST00000490689 ARXQ96QS3 562 aa17.27■□□□□ 0.36
SHOX2-205ENST00000490689 SETD5Q9C0A6 1442 aa17.27■□□□□ 0.36
SHOX2-205ENST00000490689 KDM2AQ9Y2K7 1162 aa17.24■□□□□ 0.35
SHOX2-205ENST00000490689 NEFMP07197 916 aa17.23■□□□□ 0.35
SHOX2-205ENST00000490689 HSPA5P11021 654 aaKnown RBP17.22■□□□□ 0.35
SHOX2-205ENST00000490689 KIF27Q86VH2 1401 aa17.21■□□□□ 0.35
SHOX2-205ENST00000490689 FOXD1Q16676 465 aa17.18■□□□□ 0.34
SHOX2-205ENST00000490689 TIMELESSQ9UNS1 1208 aa17.17■□□□□ 0.34
SHOX2-205ENST00000490689 CANXP27824 592 aaKnown RBP17.16■□□□□ 0.34
SHOX2-205ENST00000490689 BAZ1BQ9UIG0 1483 aaKnown RBP17.16■□□□□ 0.34
SHOX2-205ENST00000490689 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.14■□□□□ 0.33
SHOX2-205ENST00000490689 TOP2AP11388 1531 aaKnown RBP17.13■□□□□ 0.33
SHOX2-205ENST00000490689 FANCIQ9NVI1 1328 aa17.1■□□□□ 0.33
SHOX2-205ENST00000490689 MSH5O43196 834 aa17.09■□□□□ 0.33
SHOX2-205ENST00000490689 FBLN2P98095 1184 aa17.09■□□□□ 0.33
SHOX2-205ENST00000490689 IPO9Q96P70 1041 aaKnown RBP17.03■□□□□ 0.32
SHOX2-205ENST00000490689 ERICH6BQ5W0A0 696 aa17.03■□□□□ 0.32
SHOX2-205ENST00000490689 PPM1GO15355 546 aaPredicted RBP17.02■□□□□ 0.32
SHOX2-205ENST00000490689 CARMIL1Q5VZK9 1371 aa17.02■□□□□ 0.32
SHOX2-205ENST00000490689 RGS3P49796 1198 aa17.01■□□□□ 0.31
SHOX2-205ENST00000490689 KIF21BO75037 1637 aa17■□□□□ 0.31
SHOX2-205ENST00000490689 CUX2O14529 1486 aa17■□□□□ 0.31
SHOX2-205ENST00000490689 L3MBTL2Q969R5 705 aa16.99■□□□□ 0.31
SHOX2-205ENST00000490689 RGL3Q3MIN7 710 aa16.98■□□□□ 0.31
SHOX2-205ENST00000490689 SMARCA2P51531 1590 aa16.98■□□□□ 0.31
SHOX2-205ENST00000490689 CARD11Q9BXL7 1154 aa16.98■□□□□ 0.31
SHOX2-205ENST00000490689 DDRGK1Q96HY6 314 aa16.97■□□□□ 0.31
SHOX2-205ENST00000490689 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.97■□□□□ 0.31
SHOX2-205ENST00000490689 PAK3O75914 559 aaPredicted RBP16.97■□□□□ 0.31
SHOX2-205ENST00000490689 PRKRIP1Q9H875 184 aaPredicted RBP16.96■□□□□ 0.3
SHOX2-205ENST00000490689 FHAD1B1AJZ9 1412 aa16.95■□□□□ 0.3
SHOX2-205ENST00000490689 ARHGAP35Q9NRY4 1499 aa16.95■□□□□ 0.3
SHOX2-205ENST00000490689 WDR43Q15061 677 aaKnown RBP eCLIP16.94■□□□□ 0.3
SHOX2-205ENST00000490689 NUDCQ9Y266 331 aa16.93■□□□□ 0.3
SHOX2-205ENST00000490689 CCDC184Q52MB2 194 aa16.92■□□□□ 0.3
SHOX2-205ENST00000490689 CC2D1BQ5T0F9 858 aaKnown RBP16.91■□□□□ 0.3
SHOX2-205ENST00000490689 MPHOSPH9Q99550 1183 aa16.91■□□□□ 0.3
SHOX2-205ENST00000490689 UPF2Q9HAU5 1272 aaKnown RBP16.91■□□□□ 0.3
SHOX2-205ENST00000490689 ANO8Q9HCE9 1232 aaPredicted RBP16.9■□□□□ 0.3
SHOX2-205ENST00000490689 SMARCA4P51532 1647 aa16.9■□□□□ 0.3
SHOX2-205ENST00000490689 SLC4A3P48751 1232 aa16.9■□□□□ 0.3
SHOX2-205ENST00000490689 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.9■□□□□ 0.3
SHOX2-205ENST00000490689 PHLDB1Q86UU1 1377 aa16.88■□□□□ 0.29
SHOX2-205ENST00000490689 ARAP1Q96P48 1450 aa16.88■□□□□ 0.29
SHOX2-205ENST00000490689 RCAN3Q9UKA8 241 aa16.88■□□□□ 0.29
SHOX2-205ENST00000490689 FHOD3Q2V2M9 1422 aa16.87■□□□□ 0.29
SHOX2-205ENST00000490689 WASHC2AQ641Q2 1341 aa16.86■□□□□ 0.29
SHOX2-205ENST00000490689 ZBED9Q6R2W3 1325 aa16.86■□□□□ 0.29
SHOX2-205ENST00000490689 WDR97A6NE52 1622 aa16.85■□□□□ 0.29
SHOX2-205ENST00000490689 EXOC6Q8TAG9 804 aa16.85■□□□□ 0.29
SHOX2-205ENST00000490689 HSP90AA1P07900 732 aaKnown RBP16.84■□□□□ 0.29
SHOX2-205ENST00000490689 IL27Q8NEV9 243 aa16.84■□□□□ 0.29
SHOX2-205ENST00000490689 TSPY4P0CV99 314 aa16.83■□□□□ 0.28
SHOX2-205ENST00000490689 TSPY10P0CW01 314 aa16.83■□□□□ 0.28
SHOX2-205ENST00000490689 TCERG1O14776 1098 aaKnown RBP16.83■□□□□ 0.28
SHOX2-205ENST00000490689 PLIN1O60240 522 aa16.82■□□□□ 0.28
SHOX2-205ENST00000490689 RRBP1Q9P2E9 1410 aaKnown RBP16.82■□□□□ 0.28
SHOX2-205ENST00000490689 PDE4AP27815 886 aa16.82■□□□□ 0.28
SHOX2-205ENST00000490689 DCAF11Q8TEB1 546 aa16.81■□□□□ 0.28
SHOX2-205ENST00000490689 CFDP1Q9UEE9 299 aaPredicted RBP16.81■□□□□ 0.28
SHOX2-205ENST00000490689 GLIPR1L2Q4G1C9 344 aa16.81■□□□□ 0.28
SHOX2-205ENST00000490689 SYNJ1O43426 1573 aa16.8■□□□□ 0.28
SHOX2-205ENST00000490689 NEUROD2Q15784 382 aa16.78■□□□□ 0.28
SHOX2-205ENST00000490689 FMN1Q68DA7 1419 aa16.78■□□□□ 0.28
SHOX2-205ENST00000490689 SPRYD3Q8NCJ5 442 aa16.77■□□□□ 0.28
SHOX2-205ENST00000490689 BECN1Q14457 450 aa16.77■□□□□ 0.27
SHOX2-205ENST00000490689 NAP1L5Q96NT1 182 aaPredicted RBP16.76■□□□□ 0.27
SHOX2-205ENST00000490689 PKD2Q13563 968 aa16.76■□□□□ 0.27
SHOX2-205ENST00000490689 CCDC18Q5T9S5 1454 aa16.76■□□□□ 0.27
SHOX2-205ENST00000490689 SLKQ9H2G2 1235 aaPredicted RBP16.75■□□□□ 0.27
SHOX2-205ENST00000490689 FRAT1Q92837 279 aaPredicted RBP16.74■□□□□ 0.27
SHOX2-205ENST00000490689 ATAD2BQ9ULI0 1458 aa16.72■□□□□ 0.27
SHOX2-205ENST00000490689 AKNAQ7Z591 1439 aa16.72■□□□□ 0.27
SHOX2-205ENST00000490689 KNSTRNQ9Y448 316 aa16.71■□□□□ 0.27
SHOX2-205ENST00000490689 CHGAP10645 457 aaKnown RBP16.71■□□□□ 0.27
SHOX2-205ENST00000490689 ARID4BQ4LE39 1312 aaPredicted RBP16.71■□□□□ 0.26
SHOX2-205ENST00000490689 KIF7Q2M1P5 1343 aa16.7■□□□□ 0.26
SHOX2-205ENST00000490689 RRP1P56182 461 aaKnown RBP16.7■□□□□ 0.26
SHOX2-205ENST00000490689 ANP32BQ92688 251 aaKnown RBP16.7■□□□□ 0.26
SHOX2-205ENST00000490689 PRKCSHP14314 528 aaPredicted RBP16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 110.6 ms