RNA–Protein interactions for RNA: ENST00000489443.2

LMX1A-204, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

TSL 1 (best)

Gene LMX1A, Length 1,255 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-204ENST00000489443 ERCC6L2Q5T890 1561 aa26.47■■□□□ 1.83
LMX1A-204ENST00000489443 CHIC1Q5VXU3 224 aa26.47■■□□□ 1.83
LMX1A-204ENST00000489443 RAPGEF2Q9Y4G8 1499 aa26.45■■□□□ 1.82
LMX1A-204ENST00000489443 KIAA0586Q9BVV6 1533 aa26.44■■□□□ 1.82
LMX1A-204ENST00000489443 PRG4Q92954 1404 aaPredicted RBP26.42■■□□□ 1.82
LMX1A-204ENST00000489443 CSRNP3Q8WYN3 585 aa26.35■■□□□ 1.81
LMX1A-204ENST00000489443 FAM9AQ8IZU1 332 aaPredicted RBP26.33■■□□□ 1.81
LMX1A-204ENST00000489443 PRXQ9BXM0 1461 aa26.31■■□□□ 1.8
LMX1A-204ENST00000489443 EEA1Q15075 1411 aa26.3■■□□□ 1.8
LMX1A-204ENST00000489443 IQGAP2Q13576 1575 aa26.29■■□□□ 1.8
LMX1A-204ENST00000489443 CTTNBP2Q8WZ74 1663 aa26.19■■□□□ 1.78
LMX1A-204ENST00000489443 CARMIL2Q6F5E8 1435 aa26.19■■□□□ 1.78
LMX1A-204ENST00000489443 TTBK1Q5TCY1 1321 aaPredicted RBP26.17■■□□□ 1.78
LMX1A-204ENST00000489443 UGGT2Q9NYU1 1516 aa26.13■■□□□ 1.77
LMX1A-204ENST00000489443 TRHP20396 242 aaPredicted RBP26.12■■□□□ 1.77
LMX1A-204ENST00000489443 DISP1Q96F81 1524 aa26.11■■□□□ 1.77
LMX1A-204ENST00000489443 PTPRGP23470 1445 aa26.11■■□□□ 1.77
LMX1A-204ENST00000489443 TNIKQ9UKE5 1360 aa26.1■■□□□ 1.77
LMX1A-204ENST00000489443 EHMT2Q96KQ7 1210 aa26.04■■□□□ 1.76
LMX1A-204ENST00000489443 KIF21BO75037 1637 aa26.03■■□□□ 1.76
LMX1A-204ENST00000489443 KIAA0556O60303 1618 aa26.03■■□□□ 1.76
LMX1A-204ENST00000489443 NPM1P06748 294 aaKnown RBP eCLIP26.01■■□□□ 1.75
LMX1A-204ENST00000489443 ADCY10Q96PN6 1610 aa26■■□□□ 1.75
LMX1A-204ENST00000489443 GOLGA3Q08378 1498 aa26■■□□□ 1.75
LMX1A-204ENST00000489443 RANGAP1P46060 587 aaPredicted RBP25.96■■□□□ 1.75
LMX1A-204ENST00000489443 UBTFP17480 764 aaKnown RBP25.93■■□□□ 1.74
LMX1A-204ENST00000489443 P3H3Q8IVL6 736 aa25.93■■□□□ 1.74
LMX1A-204ENST00000489443 UACAQ9BZF9 1416 aa25.9■■□□□ 1.74
LMX1A-204ENST00000489443 UHRF1BP1LA0JNW5 1464 aa25.85■■□□□ 1.73
LMX1A-204ENST00000489443 ABCC2Q92887 1545 aa25.84■■□□□ 1.73
LMX1A-204ENST00000489443 SAMD9Q5K651 1589 aa25.83■■□□□ 1.73
LMX1A-204ENST00000489443 PLB1Q6P1J6 1458 aa25.81■■□□□ 1.72
LMX1A-204ENST00000489443 MAPKBP1O60336 1514 aa25.81■■□□□ 1.72
LMX1A-204ENST00000489443 KIF13AQ9H1H9 1805 aa25.75■■□□□ 1.71
LMX1A-204ENST00000489443 ABCA8O94911 1581 aa25.75■■□□□ 1.71
LMX1A-204ENST00000489443 FAM69CQ0P6D2 419 aa25.75■■□□□ 1.71
LMX1A-204ENST00000489443 KDM5BQ9UGL1 1544 aa25.74■■□□□ 1.71
LMX1A-204ENST00000489443 FHOD3Q2V2M9 1422 aa25.73■■□□□ 1.71
LMX1A-204ENST00000489443 ABCC10Q5T3U5 1492 aa25.72■■□□□ 1.71
LMX1A-204ENST00000489443 ZCCHC11Q5TAX3 1644 aaKnown RBP25.71■■□□□ 1.71
LMX1A-204ENST00000489443 EFCAB5A4FU69 1503 aa25.71■■□□□ 1.71
LMX1A-204ENST00000489443 ASXL2Q76L83 1435 aa25.71■■□□□ 1.71
LMX1A-204ENST00000489443 DIP2BQ9P265 1576 aa25.68■■□□□ 1.7
LMX1A-204ENST00000489443 ARID3CA6NKF2 412 aa25.67■■□□□ 1.7
LMX1A-204ENST00000489443 RAPGEF6Q8TEU7 1601 aa25.63■■□□□ 1.69
LMX1A-204ENST00000489443 ARHGAP35Q9NRY4 1499 aa25.6■■□□□ 1.69
LMX1A-204ENST00000489443 TSPOAP1O95153 1857 aa25.56■■□□□ 1.68
LMX1A-204ENST00000489443 ATP10BO94823 1461 aa25.56■■□□□ 1.68
LMX1A-204ENST00000489443 WDR7Q9Y4E6 1490 aa25.55■■□□□ 1.68
LMX1A-204ENST00000489443 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.55■■□□□ 1.68
LMX1A-204ENST00000489443 HNRNPUL2Q1KMD3 747 aaKnown RBP25.55■■□□□ 1.68
LMX1A-204ENST00000489443 EPRSP07814 1512 aaKnown RBP25.54■■□□□ 1.68
LMX1A-204ENST00000489443 KCNH8Q96L42 1107 aa25.54■■□□□ 1.68
LMX1A-204ENST00000489443 NUP153P49790 1475 aaKnown RBP25.53■■□□□ 1.68
LMX1A-204ENST00000489443 GLI2P10070 1586 aa25.52■■□□□ 1.68
LMX1A-204ENST00000489443 FMN1Q68DA7 1419 aa25.49■■□□□ 1.67
LMX1A-204ENST00000489443 ATP1B4Q9UN42 357 aaPredicted RBP25.49■■□□□ 1.67
LMX1A-204ENST00000489443 CLIP1P30622 1438 aa25.46■■□□□ 1.67
LMX1A-204ENST00000489443 LOC105371045A0A1W2PR82 267 aa25.44■■□□□ 1.66
LMX1A-204ENST00000489443 MAP3K4Q9Y6R4 1608 aa25.41■■□□□ 1.66
LMX1A-204ENST00000489443 PLEKHD1A6NEE1 506 aa25.39■■□□□ 1.66
LMX1A-204ENST00000489443 PPRC1Q5VV67 1664 aaKnown RBP25.38■■□□□ 1.65
LMX1A-204ENST00000489443 HECW1Q76N89 1606 aa25.37■■□□□ 1.65
LMX1A-204ENST00000489443 CDK13Q14004 1512 aaKnown RBP25.37■■□□□ 1.65
LMX1A-204ENST00000489443 CD109Q6YHK3 1445 aa25.35■■□□□ 1.65
LMX1A-204ENST00000489443 CFAP43Q8NDM7 1665 aa25.34■■□□□ 1.65
LMX1A-204ENST00000489443 CEP162Q5TB80 1403 aa25.32■■□□□ 1.64
LMX1A-204ENST00000489443 TEX14Q8IWB6 1497 aa25.31■■□□□ 1.64
LMX1A-204ENST00000489443 KDM6BO15054 1643 aa25.3■■□□□ 1.64
LMX1A-204ENST00000489443 CASKIN1Q8WXD9 1431 aa25.29■■□□□ 1.64
LMX1A-204ENST00000489443 PCF11O94913 1555 aaKnown RBP25.29■■□□□ 1.64
LMX1A-204ENST00000489443 ABCA9Q8IUA7 1624 aa25.27■■□□□ 1.64
LMX1A-204ENST00000489443 CDK11AQ9UQ88 783 aaPredicted RBP25.26■■□□□ 1.63
LMX1A-204ENST00000489443 MAGI3Q5TCQ9 1506 aa25.26■■□□□ 1.63
LMX1A-204ENST00000489443 LRRIQ1Q96JM4 1722 aa25.26■■□□□ 1.63
LMX1A-204ENST00000489443 FYCO1Q9BQS8 1478 aa25.21■■□□□ 1.63
LMX1A-204ENST00000489443 CCDC18Q5T9S5 1454 aa25.19■■□□□ 1.62
LMX1A-204ENST00000489443 COL17A1Q9UMD9 1497 aaPredicted RBP25.18■■□□□ 1.62
LMX1A-204ENST00000489443 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.17■■□□□ 1.62
LMX1A-204ENST00000489443 TROQ12816 1431 aaPredicted RBP25.14■■□□□ 1.62
LMX1A-204ENST00000489443 TTC37Q6PGP7 1564 aa25.14■■□□□ 1.61
LMX1A-204ENST00000489443 KIF14Q15058 1648 aa25.1■■□□□ 1.61
LMX1A-204ENST00000489443 NEO1Q92859 1461 aa25.07■■□□□ 1.6
LMX1A-204ENST00000489443 PHLDB1Q86UU1 1377 aa25.06■■□□□ 1.6
LMX1A-204ENST00000489443 ARAP3Q8WWN8 1544 aa25.05■■□□□ 1.6
LMX1A-204ENST00000489443 FANCAO15360 1455 aa25.03■■□□□ 1.6
LMX1A-204ENST00000489443 PLCH2O75038 1416 aa25.03■■□□□ 1.6
LMX1A-204ENST00000489443 MYO5CQ9NQX4 1742 aa25.01■■□□□ 1.59
LMX1A-204ENST00000489443 VPS8Q8N3P4 1428 aa25.01■■□□□ 1.59
LMX1A-204ENST00000489443 RAPGEF3O95398 923 aa25■■□□□ 1.59
LMX1A-204ENST00000489443 AKNAQ7Z591 1439 aa25■■□□□ 1.59
LMX1A-204ENST00000489443 CFAP74Q9C0B2 1584 aa25■■□□□ 1.59
LMX1A-204ENST00000489443 MTUS2Q5JR59 1369 aa24.98■■□□□ 1.59
LMX1A-204ENST00000489443 EFCAB2Q5VUJ9 269 aa24.97■■□□□ 1.59
LMX1A-204ENST00000489443 ARHGAP5Q13017 1502 aa24.93■■□□□ 1.58
LMX1A-204ENST00000489443 DENND4BO75064 1496 aaPredicted RBP24.92■■□□□ 1.58
LMX1A-204ENST00000489443 ADGRL1O94910 1474 aa24.9■■□□□ 1.58
LMX1A-204ENST00000489443 CDC42BPBQ9Y5S2 1711 aa24.9■■□□□ 1.58
LMX1A-204ENST00000489443 SCAPERQ9BY12 1400 aa24.88■■□□□ 1.57
LMX1A-204ENST00000489443 CDC42BPAQ5VT25 1732 aa24.88■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms